View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8327_low_6 (Length: 221)

Name: NF8327_low_6
Description: NF8327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8327_low_6
NF8327_low_6
[»] chr8 (3 HSPs)
chr8 (13-218)||(41528413-41528620)
chr8 (13-205)||(36754454-36754647)
chr8 (110-168)||(43216917-43216975)
[»] scaffold0284 (1 HSPs)
scaffold0284 (15-205)||(2254-2445)
[»] scaffold0114 (1 HSPs)
scaffold0114 (13-218)||(35117-35324)
[»] chr4 (6 HSPs)
chr4 (13-218)||(6552613-6552820)
chr4 (13-218)||(6553013-6553220)
chr4 (13-218)||(312787-313004)
chr4 (110-176)||(24181727-24181793)
chr4 (20-77)||(7616761-7616818)
chr4 (87-139)||(6561023-6561075)
[»] chr1 (6 HSPs)
chr1 (13-218)||(45919623-45919830)
chr1 (13-218)||(49880255-49880464)
chr1 (96-176)||(16853665-16853745)
chr1 (20-77)||(40872561-40872618)
chr1 (87-168)||(31088746-31088829)
chr1 (16-56)||(9890557-9890597)
[»] chr5 (1 HSPs)
chr5 (13-199)||(9023444-9023631)
[»] chr2 (7 HSPs)
chr2 (13-205)||(31967255-31967448)
chr2 (16-80)||(23077825-23077889)
chr2 (89-128)||(36727631-36727670)
chr2 (13-80)||(41746339-41746406)
chr2 (14-80)||(9470623-9470689)
chr2 (102-142)||(36720129-36720169)
chr2 (92-176)||(45054025-45054109)
[»] scaffold0211 (1 HSPs)
scaffold0211 (13-218)||(19857-20064)
[»] chr3 (6 HSPs)
chr3 (36-199)||(50239968-50240135)
chr3 (13-80)||(7672541-7672608)
chr3 (8-74)||(43838652-43838718)
chr3 (110-177)||(14249223-14249290)
chr3 (110-176)||(6437626-6437692)
chr3 (13-54)||(30006165-30006206)
[»] chr6 (5 HSPs)
chr6 (16-80)||(6525049-6525113)
chr6 (97-176)||(18089942-18090021)
chr6 (13-79)||(21237365-21237431)
chr6 (95-176)||(26595897-26595978)
chr6 (87-175)||(31737166-31737254)
[»] scaffold0191 (1 HSPs)
scaffold0191 (110-176)||(11645-11711)
[»] scaffold0216 (1 HSPs)
scaffold0216 (87-139)||(29157-29209)
[»] scaffold0074 (1 HSPs)
scaffold0074 (89-176)||(32751-32837)
[»] scaffold0252 (1 HSPs)
scaffold0252 (16-80)||(17103-17166)
[»] chr7 (4 HSPs)
chr7 (89-143)||(2929478-2929532)
chr7 (110-176)||(6190585-6190651)
chr7 (20-80)||(8929667-8929727)
chr7 (87-175)||(29912628-29912716)


Alignment Details
Target: chr8 (Bit Score: 172; Significance: 1e-92; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 41528620 - 41528413
Alignment:
Q  13 cagagacaatttaaaattttaatacattgatggactattttagcttcacatgtatccaatgtctagat-tgtccctggatgcaaaagtaaatgttaagaa 111  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  41528620 cagagacaatttaaaattttaatacattgatgtactattttagcctcacatgtatccaatgtctagatatgtccctggatgcaaaagtaaatgttaagaa 41528521  T
Q  112 acatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataatatgatg-tccat 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||     
T  41528520 acatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttaacataacatgatgatccaa 41528421  T
Q  211 ctcattgt 218  Q
    ||||||||    
T  41528420 ctcattgt 41528413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 13 - 205
Target Start/End: Complemental strand, 36754647 - 36754454
Alignment:
Q  13 cagagacaatttaaaattttaatacattgatggactattttagcttcacatgtatccaatgtctagat-tgtccctggatgcaaaagtaaatgttaagaa 111  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  36754647 cagagacaatttaaaattttaatacattgatggactatcttagcctcacatgtatccaatgtctagatctatccctggatgcaaaagtaaatgttaagaa 36754548  T
Q  112 acatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataatatgatg 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||| |||||    
T  36754547 acatataagtgagatgatcgatatacctaatacactaagattttggatgatgatctgctgtcaatagtatgattaaccttaacataatgtgatg 36754454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 43216975 - 43216917
Alignment:
Q  110 aaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtg 168  Q
    ||||||||||||||||||||| |||||| |||| |  ||||||||||| ||||||||||    
T  43216975 aaacatataagtgagatgatcaatatacataatgctttaagattttgggtgatgatgtg 43216917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 15 - 205
Target Start/End: Complemental strand, 2445 - 2254
Alignment:
Q  15 gagacaatttaaaattttaatacattgatggactattttagcttcacatgtatccaatgtctagat-tgtccctggatgcaaaagtaaatgttaagaaac 113  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2445 gagacaatttaaaattttaatagattgatggactattttagcctcacatgtatccaatgtctagatctgtccctggatgcaaaagtaaatgttaagaaac 2346  T
Q  114 atataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataatatgatg 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  2345 atataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttaacataatgtgatg 2254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 35117 - 35324
Alignment:
Q  13 cagagacaatttaaaattttaatacattgatggactattttagcttcacatgtatccaatgtctagatt-gtccctggatgcaaaagtaaatgttaagaa 111  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  35117 cagagacaatttaaaattttaatacattgatggactattttagcctcacatgtatccaatgtctagatttgtccctggatgcaaaagtaaatgttaagaa 35216  T
Q  112 acatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataatatgatg-tccat 210  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||  ||||| ||||     
T  35217 acatataagttagatgatcgatatacctaatacactaagattttggatgatgttgtgctgtcaattgtatgattaaccttaacataaagtgatgatccaa 35316  T
Q  211 ctcattgt 218  Q
    ||||||||    
T  35317 ctcattgt 35324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 164; Significance: 8e-88; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 6552613 - 6552820
Alignment:
Q  13 cagagacaatttaaaattttaatacattgatggactattttagcttcacatgtatccaatgtctagat-tgtccctggatgcaaaagtaaatgttaagaa 111  Q
    |||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||    
T  6552613 cagagacaatttaaatctttaatacattgatggactattttagcctcacatgtatccaatgtctagatctgtccctggatgcaaaagtaaatgttaaaaa 6552712  T
Q  112 acatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataatatgatg-tccat 210  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||     
T  6552713 acgtataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataatgtgatgatccaa 6552812  T
Q  211 ctcattgt 218  Q
    ||||||||    
T  6552813 ctcattgt 6552820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 6553013 - 6553220
Alignment:
Q  13 cagagacaatttaaaattttaatacattgatggactattttagcttcacatgtatccaatgtctagat-tgtccctggatgcaaaagtaaatgttaagaa 111  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  6553013 cagagacaatttaaaattttaatacattgatggactattttagcctcacatgtatccaatgtctagatctgtccctagatgcaaaagtaaatgttaagaa 6553112  T
Q  112 acatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataatatgatg-tccat 210  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||| ||||     
T  6553113 acatataagtgagatgatcgatatacctaatagactaagattttggatgatggtgtgctgtcaattgtatgattaaccttaacataatgtgatgatccaa 6553212  T
Q  211 ctcattgt 218  Q
    ||||||||    
T  6553213 ctcattgt 6553220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 312787 - 313004
Alignment:
Q  13 cagagacaatttaaaattttaatacattgatggactattttagcttcacatgtatccaatgtctagat-----------tgtccctggatgcaaaagtaa 101  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||           ||||  |||||||||||||||    
T  312787 cagagacaatttaaaattttaatacattgatggactattttagcctcacatgtatccaatgtctcgatctgtctcgatctgtctgtggatgcaaaagtaa 312886  T
Q  102 atgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataatat 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |    
T  312887 atgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttaacataatgt 312986  T
Q  202 gatg-tccatctcattgt 218  Q
    |||| |||| ||||||||    
T  312987 gatgatccaactcattgt 313004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 176
Target Start/End: Complemental strand, 24181793 - 24181727
Alignment:
Q  110 aaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaat 176  Q
    ||||||||||||||||||||| |||||| |||| |  |||| |||||| ||||||| || |||||||    
T  24181793 aaacatataagtgagatgatcaatatacataatgctttaaggttttgggtgatgatatggtgtcaat 24181727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 7616818 - 7616761
Alignment:
Q  20 aatttaaaattttaatacattgatggactattttagcttcacatgtatccaatgtcta 77  Q
    ||||||||||||||||||| |||   |||||||||||| ||||| |||| ||||||||    
T  7616818 aatttaaaattttaatacactgaaaaactattttagctccacatatatcaaatgtcta 7616761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 139
Target Start/End: Original strand, 6561023 - 6561075
Alignment:
Q  87 tggatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacct 139  Q
    ||||| |||||||| |||||||  |||||||||||||||||| | ||||||||    
T  6561023 tggatacaaaagtagatgttaaacaacatataagtgagatgaccaatatacct 6561075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 164; Significance: 8e-88; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 45919830 - 45919623
Alignment:
Q  13 cagagacaatttaaaattttaatacattgatggactattttagcttcacatgtatccaatgtctagatt-gtccctggatgcaaaagtaaatgttaagaa 111  Q
    ||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  45919830 cagagacaatttaaaattttaatacattggtggactattttagtctcacatgtatccaatgtctagatccgtccctggatgcaaaagtaaatgttaagaa 45919731  T
Q  112 acatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataatatgatg-tccat 210  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||     
T  45919730 atatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataatgtgatgatccaa 45919631  T
Q  211 ctcattgt 218  Q
    ||||||||    
T  45919630 ctcattgt 45919623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 49880255 - 49880464
Alignment:
Q  13 cagagacaatttaaaattttaatacattgatggactattttagcttcacatgtatccaatgtctagatt-gtccctggatgcaaaagtaaatgttaagaa 111  Q
    ||||||||||||||||||| ||||||||| |||||||||||||  || ||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  49880255 cagagacaatttaaaatttaaatacattggtggactattttagtctcgcatgtatccaatgtctagatccgtccctggatgcaaaagtaaatgttaagaa 49880354  T
Q  112 acatataagtgagatgatc--gatatacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataatatgatg-tcc 208  Q
    ||||||||||||||||||   ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||| |||    
T  49880355 acatataagtgagatgataaagatatacctaatacactaagattttgattgatgatgtgttgtcaattgtatgattaaccttaacataatgtgatgatcc 49880454  T
Q  209 atctcattgt 218  Q
    | ||||||||    
T  49880455 aactcattgt 49880464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 176
Target Start/End: Original strand, 16853665 - 16853745
Alignment:
Q  96 aagtaaatgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaat 176  Q
    |||||||| || | ||||||||||||||||||||| |||||| |||| |  |||| |||||| |||||||||| |||||||    
T  16853665 aagtaaatcttgaaaaacatataagtgagatgatcaatatacataatgctttaaggttttgggtgatgatgtggtgtcaat 16853745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 40872618 - 40872561
Alignment:
Q  20 aatttaaaattttaatacattgatggactattttagcttcacatgtatccaatgtcta 77  Q
    ||||||||||||| ||||||| | ||||||||||||| |||||| |||| ||||||||    
T  40872618 aatttaaaattttgatacattaagggactattttagcctcacatatatcaaatgtcta 40872561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 168
Target Start/End: Complemental strand, 31088829 - 31088746
Alignment:
Q  87 tggatgcaaaagtaaatgttaagaaacatata--agtgagatgatcgatatacctaatacactaagattttggatgatgatgtg 168  Q
    ||||||||| ||||  |||| |||||||||||  |||||||||||| ||||||||||| |  ||| ||||||||||||| ||||    
T  31088829 tggatgcaagagtaggtgttgagaaacatatataagtgagatgatcaatatacctaatgccttaatattttggatgatggtgtg 31088746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 9890597 - 9890557
Alignment:
Q  16 agacaatttaaaattttaatacattgatggactattttagc 56  Q
    |||||||||||||||||||||||||||  ||| ||||||||    
T  9890597 agacaatttaaaattttaatacattgaaagaccattttagc 9890557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 13 - 199
Target Start/End: Original strand, 9023444 - 9023631
Alignment:
Q  13 cagagacaatttaaaattttaatacattgatggactattttagcttcacatgtatccaatgtctagatt-gtccctggatgcaaaagtaaatgttaagaa 111  Q
    ||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  9023444 cagagacaatttaaaattttaatacattgatagactatcttagcctcacatgtatccaatgtctatatttgtccctggatgcaaaagtaaatgttaagaa 9023543  T
Q  112 acatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataat 199  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9023544 acatacaagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataat 9023631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 154; Significance: 7e-82; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 13 - 205
Target Start/End: Complemental strand, 31967448 - 31967255
Alignment:
Q  13 cagagacaatttaaaattttaatacattgatggactattttagcttcacatgtatccaatgtctagatt-gtccctggatgcaaaagtaaatgttaagaa 111  Q
    ||||||||| ||||| |||| ||| |||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  31967448 cagagacaacttaaattttttataaattgatggactactttagcctcacatgtatccaatgtctagatttgtccctggatgcaaaagtaaatgttaagaa 31967349  T
Q  112 acatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataatatgatg 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  31967348 acatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttaacataatgtgatg 31967255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 23077889 - 23077825
Alignment:
Q  16 agacaatttaaaattttaatacattgatggactattttagcttcacatgtatccaatgtctagat 80  Q
    |||||| |||||||||| ||||||||| | |||||||||||  ||||||||||| ||||||||||    
T  23077889 agacaacttaaaattttgatacattgaggaactattttagccccacatgtatccgatgtctagat 23077825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 128
Target Start/End: Complemental strand, 36727670 - 36727631
Alignment:
Q  89 gatgcaaaagtaaatgttaagaaacatataagtgagatga 128  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  36727670 gatgcaaaagtagatgttaagaaacatatatgtgagatga 36727631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 41746406 - 41746339
Alignment:
Q  13 cagagacaatttaaaattttaatacattgatggactattttagcttcacatgtatccaatgtctagat 80  Q
    |||||||||||||||||||| ||| ||| | || ||||||||||  ||||| |||| |||||||||||    
T  41746406 cagagacaatttaaaattttgatatattaagggtctattttagccccacatatatcaaatgtctagat 41746339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 9470689 - 9470623
Alignment:
Q  14 agagacaatttaaaattttaatacattgatggactattttagcttcacatgtatccaatgtctagat 80  Q
    ||||||||||||||||||| ||| ||| |  |||||||||| |  |||||||||| |||||||||||    
T  9470689 agagacaatttaaaattttgatatatttagtgactattttaaccccacatgtatcaaatgtctagat 9470623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 142
Target Start/End: Original strand, 36720129 - 36720169
Alignment:
Q  102 atgttaagaaacatataagtgagatgatcgatatacctaat 142  Q
    ||||| || |||||||||||||||||||| |||||||||||    
T  36720129 atgttgagcaacatataagtgagatgatccatatacctaat 36720169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 176
Target Start/End: Complemental strand, 45054109 - 45054025
Alignment:
Q  92 gcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaat 176  Q
    |||||||||||| || || ||||||||||||||||  || |||||||| ||    |||||||||| |||| |||||| |||||||    
T  45054109 gcaaaagtaaatattgagcaacatataagtgagatattcaatatacctgatgtcttaagattttgaatgaagatgtggtgtcaat 45054025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 20064 - 19857
Alignment:
Q  13 cagagacaatttaaaattttaatacattgatggactattttagcttcacatgtatccaatgtctagatt-gtccctggatgcaaaagtaaatgttaagaa 111  Q
    |||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  20064 cagagacaatttaaaattttaatacattgatggactatcttaacctcacatgtatccaatgtctagatttgtccctgaatgcaaaagtaaatgttaagaa 19965  T
Q  112 acatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataatatgatg-tccat 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||| ||||||||| ||||| ||||     
T  19964 acatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgctgccaattgtattattaaccataacataatgtgatgatccaa 19865  T
Q  211 ctcattgt 218  Q
    ||||||||    
T  19864 ctcattgt 19857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 36 - 199
Target Start/End: Original strand, 50239968 - 50240135
Alignment:
Q  36 acattgatggactattttagcttcacatgtatccaatgtctagat-tgtccctggatgcaaaagtaaatgttaa---gaaacatataagtgagatgatcg 131  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||| ||||||| ||||||||||||||||||||   |||||||||||||||||||||||    
T  50239968 acattgatggactattttagcctcacatgtagccaatgtctagatctgtccctcgatgcaaaagtaaatgttaattagaaacatataagtgagatgatcg 50240067  T
Q  132 atatacctaatacactaagattttggatgatgatgtgttgtcaattgtatgattaaccttaacataat 199  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  50240068 atatacctaatacactaagattttggatgatgatgtgctgtcaattgtatgattaaccttaacataat 50240135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 7672541 - 7672608
Alignment:
Q  13 cagagacaatttaaaattttaatacattgatggactattttagcttcacatgtatccaatgtctagat 80  Q
    |||||||||||||||||||||||||||||||| ||||||||| |   ||||||||| ||| |||||||    
T  7672541 cagagacaatttaaaattttaatacattgatgaactattttaaccatacatgtatcaaatatctagat 7672608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 43838652 - 43838718
Alignment:
Q  8 agaagcagagacaatttaaaattttaatacattgatggactattttagcttcacatgtatccaatgt 74  Q
    |||| |||||||||| ||||||||| ||||||||| | |||||||||||  |||||||||| |||||    
T  43838652 agaatcagagacaatgtaaaattttgatacattgaggaactattttagccccacatgtatcaaatgt 43838718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 177
Target Start/End: Complemental strand, 14249290 - 14249223
Alignment:
Q  110 aaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaatt 177  Q
    ||||||||||||||||||| | |||||| ||||||  |||| |||||| |||||||||| | ||||||    
T  14249290 aaacatataagtgagatgaccaatatacataatactttaaggttttgggtgatgatgtggtatcaatt 14249223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 176
Target Start/End: Original strand, 6437626 - 6437692
Alignment:
Q  110 aaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaat 176  Q
    ||||||||||||||||||||| |||||| |||| |  |||| |||||  |||||||||| |||||||    
T  6437626 aaacatataagtgagatgatcaatatacataatgctttaaggttttgagtgatgatgtggtgtcaat 6437692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 30006206 - 30006165
Alignment:
Q  13 cagagacaatttaaaattttaatacattgatggactatttta 54  Q
    |||||| ||||||||||||||||||||||  |||||||||||    
T  30006206 cagagataatttaaaattttaatacattgtgggactatttta 30006165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 8e-17; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 6525049 - 6525113
Alignment:
Q  16 agacaatttaaaattttaatacattgatggactattttagcttcacatgtatccaatgtctagat 80  Q
    ||||||||||||||||| ||||||||||||||||||||||   |||||||||| |||||||||||    
T  6525049 agacaatttaaaattttgatacattgatggactattttagtcccacatgtatcaaatgtctagat 6525113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 176
Target Start/End: Complemental strand, 18090021 - 18089942
Alignment:
Q  97 agtaaatgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaat 176  Q
    |||| ||||| |||||||||||| |||||||| | ||||||||||| |  |||| |||||| ||| |||||| |||||||    
T  18090021 agtagatgttcagaaacatataattgagatgaacaatatacctaatgccttaaggttttgggtgaagatgtggtgtcaat 18089942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 21237365 - 21237431
Alignment:
Q  13 cagagacaatttaaaattttaatacattgatggactattttagcttcacatgtatccaatgtctaga 79  Q
    |||||||||||||||||||| |||||||   ||||||||||| |  |||||||||  ||||||||||    
T  21237365 cagagacaatttaaaattttgatacattatgggactattttaaccccacatgtatgaaatgtctaga 21237431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 95 - 176
Target Start/End: Complemental strand, 26595978 - 26595897
Alignment:
Q  95 aaagtaaatgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaat 176  Q
    |||||| ||||| |||||||||||||| |||||| | ||  |||||||    |||| ||||||||||||||||| |||||||    
T  26595978 aaagtagatgtttagaaacatataagtaagatgaccaatgcacctaatgtcttaaggttttggatgatgatgtgatgtcaat 26595897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 175
Target Start/End: Complemental strand, 31737254 - 31737166
Alignment:
Q  87 tggatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaa 175  Q
    ||||||||| |||| ||||| |  |||||| |||||| |||||  |||||||||||||| |||||||| |  ||| |||||| ||||||    
T  31737254 tggatgcaagagtagatgttgaacaacatacaagtgatatgattcatatacctaatacattaagatttagtgtgaagatgtggtgtcaa 31737166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 110 - 176
Target Start/End: Original strand, 11645 - 11711
Alignment:
Q  110 aaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaat 176  Q
    ||||||||||||||||||||| |||||| ||||||  |||| |||||| |||||||||| |||||||    
T  11645 aaacatataagtgagatgatcaatatacataatactttaaggttttgggtgatgatgtggtgtcaat 11711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 87 - 139
Target Start/End: Complemental strand, 29209 - 29157
Alignment:
Q  87 tggatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacct 139  Q
    |||||||||||||| |||||||  |||||||||||||||||||| ||||||||    
T  29209 tggatgcaaaagtagatgttaaacaacatataagtgagatgatcaatatacct 29157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 176
Target Start/End: Original strand, 32751 - 32837
Alignment:
Q  89 gatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaat 176  Q
    ||||||| || | |||||||||||||||||||||||||||  ||||||||| || |  ||| ||||| |||||||||||| |||||||    
T  32751 gatgcaagagcatatgttaagaaacatataagtgagatgactgatatacctgatgcgttaaaatttt-gatgatgatgtggtgtcaat 32837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 17166 - 17103
Alignment:
Q  16 agacaatttaaaattttaatacattgatggactattttagcttcacatgtatccaatgtctagat 80  Q
    ||||||||||||||||| |||||||||  ||||||||| ||  |||||||||| |||||||||||    
T  17166 agacaatttaaaattttgatacattgaaagactatttt-gccccacatgtatcaaatgtctagat 17103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 143
Target Start/End: Original strand, 2929478 - 2929532
Alignment:
Q  89 gatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacctaata 143  Q
    |||| ||||||| ||||||||||||||||| ||||||||| | | ||||||||||    
T  2929478 gatgtaaaagtagatgttaagaaacatatatgtgagatgaccaagatacctaata 2929532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 176
Target Start/End: Original strand, 6190585 - 6190651
Alignment:
Q  110 aaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaat 176  Q
    ||||||||||||| ||| ||| |||||| |||| |  ||||||||||| |||||||||| |||||||    
T  6190585 aaacatataagtgggattatcaatatacataatgctttaagattttgggtgatgatgtggtgtcaat 6190651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 8929667 - 8929727
Alignment:
Q  20 aatttaaaattttaatacattgatggactattttagcttcacatgtatccaatgtctagat 80  Q
    |||||||||||||||||||||||   | |||||||||| || || |||| |||||||||||    
T  8929667 aatttaaaattttaatacattgaaaaattattttagctccatatatatcaaatgtctagat 8929727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 175
Target Start/End: Original strand, 29912628 - 29912716
Alignment:
Q  87 tggatgcaaaagtaaatgttaagaaacatataagtgagatgatcgatatacctaatacactaagattttggatgatgatgtgttgtcaa 175  Q
    |||||| || |||| ||||| || ||||||||||||  |||||| |||||||||||    |||||||| || ||| |||||||||||||    
T  29912628 tggatgtaagagtagatgttgagtaacatataagtgttatgatccatatacctaatttcataagatttggggtgaagatgtgttgtcaa 29912716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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