View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8328_high_2 (Length: 417)

Name: NF8328_high_2
Description: NF8328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8328_high_2
NF8328_high_2
[»] chr4 (23 HSPs)
chr4 (19-417)||(1524135-1524536)
chr4 (302-417)||(12116510-12116625)
chr4 (235-417)||(546962-547144)
chr4 (278-411)||(1600474-1600607)
chr4 (235-417)||(8186959-8187141)
chr4 (310-411)||(570406-570507)
chr4 (232-339)||(553606-553713)
chr4 (234-341)||(3438433-3438540)
chr4 (287-411)||(53761692-53761816)
chr4 (124-162)||(1755646-1755684)
chr4 (234-339)||(1489228-1489333)
chr4 (278-339)||(1537678-1537739)
chr4 (219-335)||(644961-645077)
chr4 (278-350)||(55908639-55908711)
chr4 (278-320)||(1495833-1495875)
chr4 (278-320)||(1533901-1533943)
chr4 (361-411)||(1537761-1537811)
chr4 (235-341)||(8183898-8184004)
chr4 (234-316)||(12121324-12121406)
chr4 (368-417)||(1519143-1519192)
chr4 (234-270)||(570541-570577)
chr4 (234-270)||(570727-570763)
chr4 (286-342)||(641039-641095)
[»] chr6 (14 HSPs)
chr6 (286-411)||(6432216-6432341)
chr6 (301-411)||(6426566-6426676)
chr6 (286-411)||(6394919-6395044)
chr6 (359-417)||(12102315-12102373)
chr6 (366-417)||(9410751-9410802)
chr6 (286-339)||(6402987-6403040)
chr6 (209-349)||(28935175-28935315)
chr6 (118-152)||(6437014-6437048)
chr6 (277-335)||(11936185-11936243)
chr6 (277-335)||(11948165-11948223)
chr6 (286-411)||(7119212-7119337)
chr6 (286-411)||(7131690-7131815)
chr6 (364-404)||(6410068-6410108)
chr6 (286-338)||(6585156-6585208)
[»] chr8 (7 HSPs)
chr8 (315-411)||(21235613-21235709)
chr8 (234-412)||(17636264-17636446)
chr8 (369-411)||(27922563-27922605)
chr8 (366-417)||(18315272-18315323)
chr8 (277-335)||(28246205-28246263)
chr8 (158-239)||(17635684-17635765)
chr8 (361-417)||(32151350-32151406)
[»] chr3 (4 HSPs)
chr3 (286-401)||(51113700-51113815)
chr3 (287-411)||(13470652-13470776)
chr3 (359-410)||(51120885-51120936)
chr3 (210-335)||(1657378-1657503)
[»] chr5 (3 HSPs)
chr5 (234-350)||(41901405-41901521)
chr5 (239-412)||(32267529-32267699)
chr5 (115-155)||(32268635-32268675)
[»] chr7 (4 HSPs)
chr7 (286-411)||(10614648-10614773)
chr7 (359-411)||(15092143-15092195)
chr7 (280-342)||(7977702-7977764)
chr7 (115-155)||(7977973-7978013)
[»] chr1 (3 HSPs)
chr1 (61-107)||(9581841-9581887)
chr1 (58-95)||(29690667-29690704)
chr1 (58-95)||(29718179-29718216)
[»] chr2 (2 HSPs)
chr2 (278-342)||(1037575-1037639)
chr2 (301-338)||(43277394-43277431)
[»] scaffold0014 (1 HSPs)
scaffold0014 (284-339)||(88943-88998)
[»] scaffold0295 (1 HSPs)
scaffold0295 (278-350)||(535-607)


Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 19 - 417
Target Start/End: Original strand, 1524135 - 1524536
Alignment:
Q  19 tctcttactatctataatggatcacgccctttcctccgccgtctcttccaaaggttcaccaacctcacttccctcgatctcacgtggta---tcgtgatc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||    
T  1524135 tctcttactatctataatggatcacgccctttcctccgccgtctcttccaaaggttcaccaacctcacttccctcgatctcacgtggtacgatcgtgatc 1524234  T
Q  116 tcaacaagcttctctgccaaatctctcgtttcccattgaaccttacaactttgacttctctcacgtgttccagagttgattctctccgtagcggtgacat 215  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  1524235 tcaacaagcttctctgccaaatctctcgttttccattgaaccttacaactttgacttctcttacttgttccagagttgattctctccgtagcggtgacat 1524334  T
Q  216 gtgcctcatcgccgactgtttccccaatttgcagctgcttgatttaagttattgctcgtacgtatctgaagaaggtattcttcaggttttaaggagatgt 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1524335 gtgcctcatcgccgactgtttccccaatttgcagctgcttgatttaagttattgctcatacgtatctgaagaaggtattcttcaggttttaaggagatgt 1524434  T
Q  316 tgtaaacttaggcatttgaacttagccaactgttctaaaatagaactgcatggaatgaactttgaagttcccaatttggaggtgttgaatttgtcacgta 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1524435 tgtaaacttaggcatttgaacttagccaactgttctaaaatagaacttcatggaatgaactttgaagttcccaatttggaggtgttgaatttgtcacgta 1524534  T
Q  416 ca 417  Q
    ||    
T  1524535 ca 1524536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 302 - 417
Target Start/End: Original strand, 12116510 - 12116625
Alignment:
Q  302 ttttaaggagatgttgtaaacttaggcatttgaacttagccaactgttctaaaatagaactgcatggaatgaactttgaagttcccaatttggaggtgtt 401  Q
    |||||||||||||||||||||| |||||||  ||||||||| ||||||| |||||| |||||| | ||||||||||||| ||||| ||||| ||||||||    
T  12116510 ttttaaggagatgttgtaaactaaggcattaaaacttagcctactgttcaaaaataaaactgcgtagaatgaactttgatgttccaaatttagaggtgtt 12116609  T
Q  402 gaatttgtcacgtaca 417  Q
    ||| ||||||| ||||    
T  12116610 gaacttgtcacataca 12116625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 235 - 417
Target Start/End: Complemental strand, 547144 - 546962
Alignment:
Q  235 ttccccaatttgcagctgcttgatttaagttattgctcgt-acgtatctgaagaaggtattcttcaggttttaaggagatgttgtaaacttaggcatttg 333  Q
    |||||||||||||| |||||||||||||||||||| |||| || ||||||||||  |||||  | | ||||||||||||||||||||  | |||||||||    
T  547144 ttccccaatttgcaactgcttgatttaagttattg-tcgtaacatatctgaagacagtatttgtgatgttttaaggagatgttgtaagataaggcatttg 547046  T
Q  334 aacttagccaactgttctaaaatagaa-ctgcatggaatgaactttgaagttcccaatttggaggtgttgaatttgtcacgtaca 417  Q
    |||||| |||| |||| ||  |  ||| ||   ||||||||||||||||||||| || ||||||||| |||| ||||||||||||    
T  547045 aacttatccaattgtt-tagtagtgaacctatttggaatgaactttgaagttcctaaattggaggtggtgaacttgtcacgtaca 546962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 278 - 411
Target Start/End: Complemental strand, 1600607 - 1600474
Alignment:
Q  278 tatctgaagaaggtattcttcaggttttaaggagatgttgtaaacttaggcatttgaacttagccaactgttctaaaatagaactgcatggaatgaactt 377  Q
    |||||||||||||||||  ||| ||||||||||||| || |||| |||| ||||||||||||||| | ||||| | |||  | ||||  |||||||||||    
T  1600607 tatctgaagaaggtatttgtcaagttttaaggagattttctaaaattagacatttgaacttagcccagtgttcaataatgaagctgcgaggaatgaactt 1600508  T
Q  378 tgaagttcccaatttggaggtgttgaatttgtca 411  Q
    ||||||||  ||  ||||||||||||| ||||||    
T  1600507 tgaagttcttaaactggaggtgttgaacttgtca 1600474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 235 - 417
Target Start/End: Original strand, 8186959 - 8187141
Alignment:
Q  235 ttccccaatttgcagctgcttgatttaagttattgctcgtacgtatctgaagaaggtattcttcaggttttaaggagatgttgtaaacttaggcatttga 334  Q
    ||||||||||||||| |||||||||| ||| ||||||   || |||||||||||||||||  ||| ||||| | |||||||||| |  ||||| ||||||    
T  8186959 ttccccaatttgcagttgcttgatttgagtcattgctatgacatatctgaagaaggtatttgtcaagttttgaagagatgttgtgagattagggatttga 8187058  T
Q  335 acttagccaactgttctaaaatagaactgcatggaatgaactttgaagttcccaatttggaggtgttgaatttgtcacgtaca 417  Q
    |||||||| ||||| | | | | |  ||    ||||||||||||||| || ||||  ||||||||||||| ||||||| ||||    
T  8187059 acttagcctactgtccaagagttgggctctccggaatgaactttgaaatttccaaactggaggtgttgaacttgtcacataca 8187141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 310 - 411
Target Start/End: Complemental strand, 570507 - 570406
Alignment:
Q  310 agatgttgtaaacttaggcatttgaacttagccaactgttctaaaatagaactgcatggaatgaactttgaagttcccaatttggaggtgttgaatttgt 409  Q
    ||||||||||||||||||||||||||||||||  |||| || ||| |  |||||| |||| ||||||||||||||| |||  | ||||||||||| ||||    
T  570507 agatgttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgcgtggattgaactttgaagttctcaaactcgaggtgttgaacttgt 570408  T
Q  410 ca 411  Q
    ||    
T  570407 ca 570406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 232 - 339
Target Start/End: Complemental strand, 553713 - 553606
Alignment:
Q  232 tgtttccccaatttgcagctgcttgatttaagttattgctcgtacgtatctgaagaaggtattcttcaggttttaaggagatgttgtaaacttaggcatt 331  Q
    |||||||||||||||||| |||||||||| || |||| ||   | ||||||||||||| | || |||| |||||||||| |||||||||  |||| ||||    
T  553713 tgtttccccaatttgcagatgcttgatttgagatattcctacgatgtatctgaagaagctgttgttcatgttttaaggacatgttgtaacattagacatt 553614  T
Q  332 tgaactta 339  Q
    ||||||||    
T  553613 tgaactta 553606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 234 - 341
Target Start/End: Original strand, 3438433 - 3438540
Alignment:
Q  234 tttccccaatttgcagctgcttgatttaagttattgctcgtacgtatctgaagaaggtattcttcaggttttaaggagatgttgtaaacttaggcatttg 333  Q
    ||||||||||||||||||||||||| | ||  | |||   ||| ||||||| |||||| || |||| ||||||||||||||||||||  |||| ||||||    
T  3438433 tttccccaatttgcagctgcttgatgtgagagaatgcgactacatatctgacgaaggtgttattcaagttttaaggagatgttgtaagattagacatttg 3438532  T
Q  334 aacttagc 341  Q
    ||||||||    
T  3438533 aacttagc 3438540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 287 - 411
Target Start/End: Original strand, 53761692 - 53761816
Alignment:
Q  287 aaggtattcttcaggttttaaggagatgttgtaaacttaggcatttgaacttagccaactgttctaaaatagaactgcatggaatgaactttgaagttcc 386  Q
    ||||||||  ||| ||||||||||||||||||||  |||||||||||||||||||| | ||||| | | |  | ||   |||||||||||||| ||||||    
T  53761692 aaggtatttgtcaagttttaaggagatgttgtaacattaggcatttgaacttagccgagtgttcaagagtgaagctaattggaatgaactttgtagttcc 53761791  T
Q  387 caatttggaggtgttgaatttgtca 411  Q
    |||  | |||| |||||| ||||||    
T  53761792 caagctagaggcgttgaacttgtca 53761816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 162
Target Start/End: Complemental strand, 1755684 - 1755646
Alignment:
Q  124 cttctctgccaaatctctcgtttcccattgaaccttaca 162  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  1755684 cttctctgccaaatctctcgtttcccattgaaacttaca 1755646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 234 - 339
Target Start/End: Original strand, 1489228 - 1489333
Alignment:
Q  234 tttccccaatttgcagctgcttgatttaagttattgctcgtacgtatctgaagaaggtattcttcaggttttaaggagatgttgtaaacttaggcatttg 333  Q
    |||||||||||||||  ||||| |||| | ||||||||   || ||||||||||||||||| | || ||||||| || ||||| | |  |||||||||||    
T  1489228 tttccccaatttgcaattgcttaatttgacttattgctataacatatctgaagaaggtattttccatgttttaaagacatgttctgatattaggcatttg 1489327  T
Q  334 aactta 339  Q
    ||||||    
T  1489328 aactta 1489333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 278 - 339
Target Start/End: Original strand, 1537678 - 1537739
Alignment:
Q  278 tatctgaagaaggtattcttcaggttttaaggagatgttgtaaacttaggcatttgaactta 339  Q
    ||||||||||||||||| |||| |||||||||| |||||   | ||||||||||||||||||    
T  1537678 tatctgaagaaggtatttttcaagttttaaggacatgttccgagcttaggcatttgaactta 1537739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 335
Target Start/End: Complemental strand, 645077 - 644961
Alignment:
Q  219 cctcatcgccgactgtttccccaatttgcagctgcttgatttaagttattgctcgtacgtatctgaagaaggtattcttcaggttttaaggagatgttgt 318  Q
    |||||| || || |||||||| ||||| ||||| |||||||| ||  |||||    |||||||||||||||||||  |||| ||||||| || |||||||    
T  645077 cctcattgctgattgtttcccaaatttacagcttcttgatttgagccattgcaaagacgtatctgaagaaggtatggttcatgttttaatgatatgttgt 644978  T
Q  319 aaacttaggcatttgaa 335  Q
    ||  |||| ||||||||    
T  644977 aacattagacatttgaa 644961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 350
Target Start/End: Original strand, 55908639 - 55908711
Alignment:
Q  278 tatctgaagaaggtattcttcaggttttaaggagatgttgtaaacttaggcatttgaacttagccaactgttc 350  Q
    |||||||||||||||||  | | ||| ||||||||||||||||  |||| |||||||| |||||| |||||||    
T  55908639 tatctgaagaaggtatttgtgaagttctaaggagatgttgtaaggttagacatttgaatttagcctactgttc 55908711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 320
Target Start/End: Original strand, 1495833 - 1495875
Alignment:
Q  278 tatctgaagaaggtattcttcaggttttaaggagatgttgtaa 320  Q
    |||||||||||||||||  ||| ||||||||||||||||||||    
T  1495833 tatctgaagaaggtattggtcatgttttaaggagatgttgtaa 1495875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 320
Target Start/End: Original strand, 1533901 - 1533943
Alignment:
Q  278 tatctgaagaaggtattcttcaggttttaaggagatgttgtaa 320  Q
    |||||||||||||||||  ||| ||||||||||||||||||||    
T  1533901 tatctgaagaaggtattagtcatgttttaaggagatgttgtaa 1533943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 411
Target Start/End: Original strand, 1537761 - 1537811
Alignment:
Q  361 ctgcatggaatgaactttgaagttcccaatttggaggtgttgaatttgtca 411  Q
    |||||||||||||||||||||||||||||  | || |||||||| ||||||    
T  1537761 ctgcatggaatgaactttgaagttcccaaactagaagtgttgaacttgtca 1537811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 341
Target Start/End: Original strand, 8183898 - 8184004
Alignment:
Q  235 ttccccaatttgcagctgcttgatttaagttattgctcgtacgtatctgaagaaggtattcttcaggttttaaggagatgttgtaaacttaggcatttga 334  Q
    |||||||||||||||| ||||||||| ||| ||||||   || | |||||| ||||||||  |||  |||||||||| |||||| |  ||||  ||||||    
T  8183898 ttccccaatttgcagcggcttgatttgagtcattgctttgacatttctgaaaaaggtattactcaaattttaaggagttgttgtgagattagagatttga 8183997  T
Q  335 acttagc 341  Q
    |||||||    
T  8183998 acttagc 8184004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 316
Target Start/End: Original strand, 12121324 - 12121406
Alignment:
Q  234 tttccccaatttgcagctgcttgatttaagttattgctcgtacgtatctgaagaaggtattcttcaggttttaaggagatgtt 316  Q
    |||||||||||||||  |||||||||| |||| |||||   || ||||||||||||||||| | || || ||||||| |||||    
T  12121324 tttccccaatttgcaattgcttgatttgagtttttgctataacatatctgaagaaggtattttccaagtcttaaggacatgtt 12121406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 368 - 417
Target Start/End: Original strand, 1519143 - 1519192
Alignment:
Q  368 gaatgaactttgaagttcccaatttggaggtgttgaatttgtcacgtaca 417  Q
    ||||||||||||||||||||||  | ||||||||||| ||||||| ||||    
T  1519143 gaatgaactttgaagttcccaaactagaggtgttgaacttgtcacataca 1519192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 570577 - 570541
Alignment:
Q  234 tttccccaatttgcagctgcttgatttaagttattgc 270  Q
    |||||||||||||||| | ||||||||||||||||||    
T  570577 tttccccaatttgcagatacttgatttaagttattgc 570541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 570763 - 570727
Alignment:
Q  234 tttccccaatttgcagctgcttgatttaagttattgc 270  Q
    ||||||||||||||| || ||||||||||||||||||    
T  570763 tttccccaatttgcaactacttgatttaagttattgc 570727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 342
Target Start/End: Complemental strand, 641095 - 641039
Alignment:
Q  286 gaaggtattcttcaggttttaaggagatgttgtaaacttaggcatttgaacttagcc 342  Q
    ||||| ||| |||| |||||||||| |||||||||  |||| |||||||||||||||    
T  641095 gaaggaatttttcaagttttaaggatatgttgtaatgttagacatttgaacttagcc 641039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 286 - 411
Target Start/End: Complemental strand, 6432341 - 6432216
Alignment:
Q  286 gaaggtattcttcaggttttaaggagatgttgtaaacttaggcatttgaacttagccaactgttctaaaatagaa-ctgcatggaatgaactttgaagtt 384  Q
    |||||||||  ||| |||||||||||||||||||||||||  ||||||||||||||| | || | |||||  ||| || |||||||||||||||||||||    
T  6432341 gaaggtatttgtcaagttttaaggagatgttgtaaacttaaacatttgaacttagcctattg-tataaaagtgaagctacatggaatgaactttgaagtt 6432243  T
Q  385 cccaatttggaggtgttgaatttgtca 411  Q
    |||||  || |||||||||| ||||||    
T  6432242 cccaagctgaaggtgttgaacttgtca 6432216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 301 - 411
Target Start/End: Complemental strand, 6426676 - 6426566
Alignment:
Q  301 gttttaaggagatgttgtaaacttaggcatttgaacttagccaactgttctaaaatagaactgcatggaatgaactttgaagttcccaatttggaggtgt 400  Q
    |||||||||| ||||||||| ||||  ||||||||||||||   |||||| ||  |  |||| |||||||||||||||| ||||||| |  |||||||||    
T  6426676 gttttaaggaaatgttgtaagcttaaacatttgaacttagctttctgttcaaacgtgaaactacatggaatgaactttgcagttcccgagctggaggtgt 6426577  T
Q  401 tgaatttgtca 411  Q
    |||||||||||    
T  6426576 tgaatttgtca 6426566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 286 - 411
Target Start/End: Complemental strand, 6395044 - 6394919
Alignment:
Q  286 gaaggtattcttcaggttttaaggagatgttgtaaacttaggcatttgaacttagccaactgttctaaaatagaactgcatggaatgaactttgaagttc 385  Q
    |||||||||  ||| ||||||| || ||||||||| ||||  ||||||||||||||   |||||| ||| |  |||| |||||||||||||||| |||||    
T  6395044 gaaggtatttgtcaagttttaaagaaatgttgtaagcttaaacatttgaacttagctttctgttcaaaagtgaaactacatggaatgaactttgcagttc 6394945  T
Q  386 ccaatttggaggtgttgaatttgtca 411  Q
    || |  ||||||||||||| ||||||    
T  6394944 ccgagctggaggtgttgaacttgtca 6394919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 359 - 417
Target Start/End: Complemental strand, 12102373 - 12102315
Alignment:
Q  359 aactgcatggaatgaactttgaagttcccaatttggaggtgttgaatttgtcacgtaca 417  Q
    ||||||||||| |||||||||||||||||||  ||||||||||||| ||||||| ||||    
T  12102373 aactgcatggattgaactttgaagttcccaaactggaggtgttgaacttgtcacataca 12102315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 366 - 417
Target Start/End: Complemental strand, 9410802 - 9410751
Alignment:
Q  366 tggaatgaactttgaagttcccaatttggaggtgttgaatttgtcacgtaca 417  Q
    |||| |||||||||||| |||||| |||||||||||||||||||||| ||||    
T  9410802 tggattgaactttgaagctcccaagttggaggtgttgaatttgtcacataca 9410751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 286 - 339
Target Start/End: Complemental strand, 6403040 - 6402987
Alignment:
Q  286 gaaggtattcttcaggttttaaggagatgttgtaaacttaggcatttgaactta 339  Q
    |||||||||  ||| ||||||||||||||||||||  |||||||||||||||||    
T  6403040 gaaggtatttgtcaagttttaaggagatgttgtaacattaggcatttgaactta 6402987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 349
Target Start/End: Complemental strand, 28935315 - 28935175
Alignment:
Q  209 gtgacatgtgcctcatcgccgactgtttccccaatttgcagctgcttgatttaagttattgctcgtacgtatctgaagaaggtattcttcaggttttaag 308  Q
    ||||| |||||||||||||||| |||||||| |||||||||  ||||||||| |   ||||     |||||| ||||||||||||| || | ||||| |     
T  28935315 gtgacctgtgcctcatcgccgattgtttccctaatttgcagtcgcttgatttgaaccattgtgatgacgtatgtgaagaaggtattgtttatgttttgat 28935216  T
Q  309 gagatgttgtaaacttaggcatttgaacttagccaactgtt 349  Q
    || ||||  |||  |||| ||||||||||||||| ||||||    
T  28935215 gaaatgtcttaacattagacatttgaacttagcctactgtt 28935175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 152
Target Start/End: Complemental strand, 6437048 - 6437014
Alignment:
Q  118 aacaagcttctctgccaaatctctcgtttcccatt 152  Q
    ||||||||||||||| |||||||||||||||||||    
T  6437048 aacaagcttctctgcgaaatctctcgtttcccatt 6437014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 335
Target Start/End: Original strand, 11936185 - 11936243
Alignment:
Q  277 gtatctgaagaaggtattcttcaggttttaaggagatgttgtaaacttaggcatttgaa 335  Q
    |||||||||||||||||| |||| ||||||| || |||||||||  |||| ||||||||    
T  11936185 gtatctgaagaaggtattgttcatgttttaatgatatgttgtaacattagacatttgaa 11936243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 335
Target Start/End: Original strand, 11948165 - 11948223
Alignment:
Q  277 gtatctgaagaaggtattcttcaggttttaaggagatgttgtaaacttaggcatttgaa 335  Q
    |||||||||||||||||| |||| ||||||| || |||||||||  |||| ||||||||    
T  11948165 gtatctgaagaaggtattgttcatgttttaatgatatgttgtaacattagacatttgaa 11948223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 411
Target Start/End: Complemental strand, 7119337 - 7119212
Alignment:
Q  286 gaaggtattcttcaggttttaaggagatgttgtaaacttaggcatttgaacttagccaactgttctaaaatagaactgcatggaatgaactttgaagttc 385  Q
    |||||||||  ||| |||||||||||||||| |||  |||  ||||||||||||||| ||||||| | | |  | || | ||||||||||||||  ||||    
T  7119337 gaaggtatttgtcaagttttaaggagatgttctaagattaaacatttgaacttagcccactgttcaagagtgaagctacttggaatgaactttgttgttc 7119238  T
Q  386 ccaatttggaggtgttgaatttgtca 411  Q
     | |  ||||||||||||| ||||||    
T  7119237 accagctggaggtgttgaacttgtca 7119212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 411
Target Start/End: Complemental strand, 7131815 - 7131690
Alignment:
Q  286 gaaggtattcttcaggttttaaggagatgttgtaaacttaggcatttgaacttagccaactgttctaaaatagaactgcatggaatgaactttgaagttc 385  Q
    |||||||||  ||| |||||||||||||||| |||  |||  ||||||||||||||| ||||||| | | |  | || | ||||||||||||||  ||||    
T  7131815 gaaggtatttgtcaagttttaaggagatgttctaagattaaacatttgaacttagcccactgttcaagagtgaagctacttggaatgaactttgttgttc 7131716  T
Q  386 ccaatttggaggtgttgaatttgtca 411  Q
     | |  ||||||||||||| ||||||    
T  7131715 gccagctggaggtgttgaacttgtca 7131690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 404
Target Start/End: Complemental strand, 6410108 - 6410068
Alignment:
Q  364 catggaatgaactttgaagttcccaatttggaggtgttgaa 404  Q
    ||||||||||||||||||||||||||  || ||||||||||    
T  6410108 catggaatgaactttgaagttcccaagctgaaggtgttgaa 6410068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 338
Target Start/End: Original strand, 6585156 - 6585208
Alignment:
Q  286 gaaggtattcttcaggttttaaggagatgttgtaaacttaggcatttgaactt 338  Q
    |||||||||  ||| |||||||||||||||| |||  ||||||||||||||||    
T  6585156 gaaggtatttgtcatgttttaaggagatgttttaatattaggcatttgaactt 6585208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 315 - 411
Target Start/End: Complemental strand, 21235709 - 21235613
Alignment:
Q  315 ttgtaaacttaggcatttgaacttagccaactgttctaaaatagaactgcatggaatgaactttgaagttcccaatttggaggtgttgaatttgtca 411  Q
    |||||||||||||||||||||||||||  |||| || ||| |  |||||  |||| |||||||||||||||||||  ||||||||||||| ||||||    
T  21235709 ttgtaaacttaggcatttgaacttagctcactgctcaaaagtgaaactgtgtggagtgaactttgaagttcccaaactggaggtgttgaacttgtca 21235613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 412
Target Start/End: Original strand, 17636264 - 17636446
Alignment:
Q  234 tttccccaatttgcagctgcttgatttaagttattgctcgtacgtatctgaagaaggtattcttcaggttttaaggagatgttgtaaacttaggcatttg 333  Q
    |||||||||||||||||||||||||||| |  |||||    |  |||| ||  ||||||||  ||| ||||||||| |||||| |||  |||||||||||    
T  17636264 tttccccaatttgcagctgcttgatttacgagattgcaataaaatatcagagaaaggtatttgtcaagttttaaggggatgttctaatattaggcatttg 17636363  T
Q  334 aacttagccaactgttctaaaatagaactgcatgga----atgaactttgaagttcccaatttggaggtgttgaatttgtcac 412  Q
    ||||||| |   ||||| | | |  |||| ||| ||    |||||||||||||||||||| |||||||||||||| |||||||    
T  17636364 aacttaggccgatgttcaagagtgaaactacatcgatcgaatgaactttgaagttcccaaattggaggtgttgaacttgtcac 17636446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 411
Target Start/End: Complemental strand, 27922605 - 27922563
Alignment:
Q  369 aatgaactttgaagttcccaatttggaggtgttgaatttgtca 411  Q
    ||||||||||||||||||||| |||||||||||||| ||||||    
T  27922605 aatgaactttgaagttcccaaattggaggtgttgaacttgtca 27922563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 366 - 417
Target Start/End: Original strand, 18315272 - 18315323
Alignment:
Q  366 tggaatgaactttgaagttcccaatttggaggtgttgaatttgtcacgtaca 417  Q
    ||||||||||||| ||||||||||  ||||||||||||| ||||||| ||||    
T  18315272 tggaatgaactttaaagttcccaaactggaggtgttgaacttgtcacataca 18315323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 335
Target Start/End: Original strand, 28246205 - 28246263
Alignment:
Q  277 gtatctgaagaaggtattcttcaggttttaaggagatgttgtaaacttaggcatttgaa 335  Q
    |||||||||||||||||| |||| ||||||| || |||||||||  |||| ||||||||    
T  28246205 gtatctgaagaaggtattgttcatgttttaatgatatgttgtaacattagacatttgaa 28246263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 17635684 - 17635765
Alignment:
Q  158 ttacaactttgacttctctcacgtgttccagagttgattctctccgtagcggtgacatgtgcctcatcgccgactgtttccc 239  Q
    ||||||||||||| |||||||| |||||| |  || |  |||||||||||  |||||||| |||||||||||  ||||||||    
T  17635684 ttacaactttgacctctctcacttgttcctgcattaacactctccgtagctttgacatgttcctcatcgccggttgtttccc 17635765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 361 - 417
Target Start/End: Complemental strand, 32151406 - 32151350
Alignment:
Q  361 ctgcatggaatgaactttgaagttcccaatttggaggtgttgaatttgtcacgtaca 417  Q
    |||| |||||||||||| |||||| ||||| |||||||||| || |||||| |||||    
T  32151406 ctgcgtggaatgaacttcgaagtttccaatctggaggtgttaaacttgtcatgtaca 32151350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 286 - 401
Target Start/End: Original strand, 51113700 - 51113815
Alignment:
Q  286 gaaggtattcttcaggttttaaggagatgttgtaaacttaggcatttgaacttagccaactgttctaaaatagaactgcatggaatgaactttgaagttc 385  Q
    |||||||||  ||| ||||||| ||||||||||||| ||||||||||||| |||||  ||||||| ||| |  | || | ||||||||||||||||| ||    
T  51113700 gaaggtatttgtcaagttttaaagagatgttgtaaaattaggcatttgaaattagcttactgttcaaaactgaagctacttggaatgaactttgaagctc 51113799  T
Q  386 ccaatttggaggtgtt 401  Q
    ||||  ||||||||||    
T  51113800 ccaaactggaggtgtt 51113815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 287 - 411
Target Start/End: Original strand, 13470652 - 13470776
Alignment:
Q  287 aaggtattcttcaggttttaaggagatgttgtaaacttaggcatttgaacttagccaactgttctaaaatagaactgcatggaatgaactttgaagttcc 386  Q
    ||||||||  ||| |||||||||| |||||||||  |||||||||||||||||||| | |||   ||| |  | || | ||||||||||||||  |||||    
T  13470652 aaggtatttgtcaagttttaaggatatgttgtaagattaggcatttgaacttagcctattgtaaaaaagtgaagctacttggaatgaactttgttgttcc 13470751  T
Q  387 caatttggaggtgttgaatttgtca 411  Q
    |||| ||||||||||||| ||||||    
T  13470752 caatctggaggtgttgaacttgtca 13470776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 359 - 410
Target Start/End: Original strand, 51120885 - 51120936
Alignment:
Q  359 aactgcatggaatgaactttgaagttcccaatttggaggtgttgaatttgtc 410  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||| |||||    
T  51120885 aactgcatggaatgaactttgaagttctcaaattggaggtgttgaacttgtc 51120936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 210 - 335
Target Start/End: Complemental strand, 1657503 - 1657378
Alignment:
Q  210 tgacatgtgcctcatcgccgactgtttccccaatttgcagctgcttgatttaagttattgctcgtacgtatctgaagaaggtattcttcaggttttaagg 309  Q
    |||| ||| |||||| || || |||||||| ||||| ||||| |||||||| ||  |||||    || ||||||||||||||||| |||| ||||||| |    
T  1657503 tgacctgttcctcattgctgattgtttcccaaatttacagctacttgatttgagccattgcaaagacatatctgaagaaggtattgttcatgttttaatg 1657404  T
Q  310 agatgttgtaaacttaggcatttgaa 335  Q
    | |||||||||  |||| ||||||||    
T  1657403 atatgttgtaacattagacatttgaa 1657378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 234 - 350
Target Start/End: Original strand, 41901405 - 41901521
Alignment:
Q  234 tttccccaatttgcagctgcttgatttaagttattgctcgtacgtatctgaagaaggtattcttcaggttttaaggagatgttgtaaacttaggcatttg 333  Q
    ||||||||||||||||||||||||||| ||  |||| |    | ||| ||||||||||||| |||| ||||||||||  ||||||||  |||| ||||||    
T  41901405 tttccccaatttgcagctgcttgatttgagcaattgttgtcgcatatttgaagaaggtattgttcaagttttaaggatgtgttgtaacattagacatttg 41901504  T
Q  334 aacttagccaactgttc 350  Q
    |||||| |||| |||||    
T  41901505 aacttatccaagtgttc 41901521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 412
Target Start/End: Complemental strand, 32267699 - 32267529
Alignment:
Q  239 ccaatttgcagctgcttgatttaagttattgctcgtacgtatctgaagaaggtattcttcaggttttaaggagatgttgtaaacttaggcatttgaactt 338  Q
    |||||||||||||||||||||| ||  |||| |    | ||||||||||||||||  ||||  ||||||||| |||||||||  |||| |||||||||||    
T  32267699 ccaatttgcagctgcttgatttgagcaattgttgtcgcatatctgaagaaggtatcgttcaatttttaaggatatgttgtaacattagacatttgaactt 32267600  T
Q  339 agccaactgttctaaaatagaactgcatggaatgaactttgaagttcccaatttggaggtgttgaatttgtcac 412  Q
    | || | ||||| | | |  ||||  |   ||||||||||||||||||||| |||||||| ||||| |||||||    
T  32267599 atcccagtgttcaacagtgaaactaga---aatgaactttgaagttcccaaattggaggtattgaacttgtcac 32267529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 32268675 - 32268635
Alignment:
Q  115 ctcaacaagcttctctgccaaatctctcgtttcccattgaa 155  Q
    ||||||||||||||||| |||||||||||||| ||||||||    
T  32268675 ctcaacaagcttctctgtcaaatctctcgttttccattgaa 32268635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 286 - 411
Target Start/End: Complemental strand, 10614773 - 10614648
Alignment:
Q  286 gaaggtattcttcaggttttaaggagatgttgtaaacttaggcatttgaacttagccaactgttctaaaatagaactgcatggaatgaactttgaagttc 385  Q
    |||||||||  ||| |||||||||| |||||||||  |||||||||||||||||||| | |||   ||| |  | || | |||||||||| |||  ||||    
T  10614773 gaaggtatttgtcaagttttaaggatatgttgtaagattaggcatttgaacttagcctattgtaaaaaagtgaagctacttggaatgaacgttgttgttc 10614674  T
Q  386 ccaatttggaggtgttgaatttgtca 411  Q
    ||||| ||||||||||||| ||||||    
T  10614673 ccaatctggaggtgttgaacttgtca 10614648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 359 - 411
Target Start/End: Original strand, 15092143 - 15092195
Alignment:
Q  359 aactgcatggaatgaactttgaagttcccaatttggaggtgttgaatttgtca 411  Q
    |||| |||||||||||||||| ||||||| |  ||||||||||||||||||||    
T  15092143 aactacatggaatgaactttgcagttcccgagctggaggtgttgaatttgtca 15092195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 342
Target Start/End: Complemental strand, 7977764 - 7977702
Alignment:
Q  280 tctgaagaaggtattcttcaggttttaaggagatgttgtaaacttaggcatttgaacttagcc 342  Q
    |||||||||||||||  ||| ||||||||||||||||||||  |||| ||||| ||| |||||    
T  7977764 tctgaagaaggtattggtcaagttttaaggagatgttgtaacattagacatttaaacctagcc 7977702  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 7978013 - 7977973
Alignment:
Q  115 ctcaacaagcttctctgccaaatctctcgtttcccattgaa 155  Q
    ||||||||||||||| ||||||| ||| |||||||||||||    
T  7978013 ctcaacaagcttctccgccaaatttcttgtttcccattgaa 7977973  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 9581887 - 9581841
Alignment:
Q  61 ctcttccaaaggttcaccaacctcacttccctcgatctcacgtggta 107  Q
    ||||||||||| |||||||||||||| |||||||| |||||||||||    
T  9581887 ctcttccaaagattcaccaacctcacctccctcgacctcacgtggta 9581841  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 95
Target Start/End: Original strand, 29690667 - 29690704
Alignment:
Q  58 cgtctcttccaaaggttcaccaacctcacttccctcga 95  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  29690667 cgtctcttgaaaaggttcaccaacctcacttccctcga 29690704  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 95
Target Start/End: Original strand, 29718179 - 29718216
Alignment:
Q  58 cgtctcttccaaaggttcaccaacctcacttccctcga 95  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  29718179 cgtctcttgaaaaggttcaccaacctcacttccctcga 29718216  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 342
Target Start/End: Original strand, 1037575 - 1037639
Alignment:
Q  278 tatctgaagaaggtattcttcaggttttaaggagatgttgtaaacttaggcatttgaacttagcc 342  Q
    |||||||||||||||||  | | ||||||||||||||||||||  |||| |||||||| ||||||    
T  1037575 tatctgaagaaggtatttgtgaagttttaaggagatgttgtaaggttagacatttgaatttagcc 1037639  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 338
Target Start/End: Original strand, 43277394 - 43277431
Alignment:
Q  301 gttttaaggagatgttgtaaacttaggcatttgaactt 338  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  43277394 gttttaaggagatgttgtaaaattacgcatttgaactt 43277431  T

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Target: scaffold0014 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 284 - 339
Target Start/End: Complemental strand, 88998 - 88943
Alignment:
Q  284 aagaaggtattcttcaggttttaaggagatgttgtaaacttaggcatttgaactta 339  Q
    |||||||||||  |||| |||||||||||||||||||  |||| ||||||||||||    
T  88998 aagaaggtattgatcagattttaaggagatgttgtaagattagacatttgaactta 88943  T

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Target: scaffold0295 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 350
Target Start/End: Original strand, 535 - 607
Alignment:
Q  278 tatctgaagaaggtattcttcaggttttaaggagatgttgtaaacttaggcatttgaacttagccaactgttc 350  Q
    |||||||||||||||||  | | ||| ||||||||||||||||   ||| |||||||| |||||| |||||||    
T  535 tatctgaagaaggtatttgtgaagttctaaggagatgttgtaaggctagacatttgaatttagcctactgttc 607  T

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