View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8328_low_4 (Length: 238)

Name: NF8328_low_4
Description: NF8328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8328_low_4
NF8328_low_4
[»] chr5 (4 HSPs)
chr5 (100-231)||(26354069-26354200)
chr5 (100-231)||(9815879-9816010)
chr5 (3-98)||(26354377-26354472)
chr5 (1-98)||(9815605-9815702)
[»] chr3 (27 HSPs)
chr3 (100-230)||(20015344-20015474)
chr3 (100-231)||(20007414-20007545)
chr3 (100-223)||(26647849-26647972)
chr3 (100-230)||(20033477-20033607)
chr3 (1-98)||(20015651-20015748)
chr3 (19-97)||(20033785-20033863)
chr3 (3-80)||(26647577-26647654)
chr3 (19-97)||(19812872-19812950)
chr3 (1-91)||(19838964-19839054)
chr3 (106-230)||(19951975-19952099)
chr3 (107-231)||(26654000-26654124)
chr3 (19-97)||(19951713-19951791)
chr3 (3-91)||(20046693-20046781)
chr3 (1-80)||(19956655-19956734)
chr3 (21-91)||(19849587-19849657)
chr3 (3-80)||(20036071-20036148)
chr3 (106-230)||(19839244-19839368)
chr3 (3-91)||(26653721-26653809)
chr3 (107-196)||(19813135-19813224)
chr3 (3-80)||(19819133-19819210)
chr3 (100-184)||(19849841-19849925)
chr3 (3-80)||(19832443-19832520)
chr3 (3-80)||(19854073-19854150)
chr3 (3-80)||(19858645-19858722)
chr3 (146-215)||(20006412-20006481)
chr3 (106-230)||(19956935-19957059)
chr3 (33-97)||(19990128-19990192)
[»] chr1 (3 HSPs)
chr1 (6-98)||(1717796-1717888)
chr1 (108-206)||(1718073-1718171)
chr1 (152-231)||(38483818-38483897)
[»] chr8 (5 HSPs)
chr8 (139-216)||(22685497-22685574)
chr8 (1-80)||(11544641-11544720)
chr8 (3-80)||(22689141-22689218)
chr8 (106-176)||(22655520-22655590)
chr8 (3-80)||(22655784-22655861)
[»] chr2 (1 HSPs)
chr2 (3-80)||(39191444-39191521)
[»] chr7 (3 HSPs)
chr7 (3-91)||(12579545-12579633)
chr7 (53-91)||(12581884-12581922)
chr7 (3-91)||(12495448-12495536)


Alignment Details
Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 100 - 231
Target Start/End: Complemental strand, 26354200 - 26354069
Alignment:
Q  100 aagtgaaagttcaaggaaacatagatctcatgtatgaaaagctaacagaagtagtaatgatgttgatgttccacctgaatttcctcccaatcttgttcac 199  Q
    ||||||||| ||||||||||| ||| |||||||  ||||| |||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||| ||    
T  26354200 aagtgaaagctcaaggaaacacagagctcatgttggaaaaactaacagaagtattaatgatgttggtgttccacctggatttcctcccaatcttgttgac 26354101  T
Q  200 attcttaattttggaaaattttgtgatgatgt 231  Q
    |||||||||| |  ||| ||||||||||||||    
T  26354100 attcttaattatcaaaatttttgtgatgatgt 26354069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 100 - 231
Target Start/End: Original strand, 9815879 - 9816010
Alignment:
Q  100 aagtgaaagttcaaggaaacatagatctcatgtatgaaaagctaacagaagtagtaatgatgttgatgttccacctgaatttcctcccaatcttgttcac 199  Q
    |||| |||||||||||||  | |||||||||||| |||||  | |||||||| |||||||||||| | ||||||||||||||||||||||||||||| ||    
T  9815879 aagtcaaagttcaaggaagtacagatctcatgtaggaaaaattgacagaagttgtaatgatgttggttttccacctgaatttcctcccaatcttgttgac 9815978  T
Q  200 attcttaattttggaaaattttgtgatgatgt 231  Q
     |||||||| |||||||  |||||| ||||||    
T  9815979 cttcttaatgttggaaagctttgtgttgatgt 9816010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 3 - 98
Target Start/End: Complemental strand, 26354472 - 26354377
Alignment:
Q  3 gagcttgttgggtttaactctatagagcagtatctgccacatagagtaactatgcaatttggaatgtatcaagatgtttcaagttatgttcctaga 98  Q
    ||||||||||| ||| ||||||||||||||||| |||||||||||||  ||||||||||||||||| ||||||||||| |||||||||| ||||||    
T  26354472 gagcttgttggatttgactctatagagcagtatttgccacatagagttgctatgcaatttggaatggatcaagatgttccaagttatgtgcctaga 26354377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 9815605 - 9815702
Alignment:
Q  1 ccgagcttgttgggtttaactctatagagcagtatctgccacatagagtaactatgcaatttggaatgtatcaagatgtttcaagttatgttcctaga 98  Q
    ||||||||||||| ||  ||||||||||||||||| |||||||||||||  |||||||||||| |||| ||||||||||| ||| |||||| ||||||    
T  9815605 ccgagcttgttggattcgactctatagagcagtatttgccacatagagttgctatgcaatttgaaatggatcaagatgttccaacttatgtgcctaga 9815702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 100 - 230
Target Start/End: Complemental strand, 20015474 - 20015344
Alignment:
Q  100 aagtgaaagttcaaggaaacatagatctcatgtatgaaaagctaacagaagtagtaatgatgttgatgttccacctgaatttcctcccaatcttgttcac 199  Q
    ||||||||||||||||||||||||| ||||| || ||||| |||||||||| ||||||||||||| ||||||||||| ||||  ||||||||||||| ||    
T  20015474 aagtgaaagttcaaggaaacatagacctcatctaggaaaaactaacagaagcagtaatgatgttggtgttccacctggattttgtcccaatcttgttgac 20015375  T
Q  200 attcttaattttggaaaattttgtgatgatg 230  Q
     ||||||| | |||||||||||| |||||||    
T  20015374 cttcttaagtatggaaaattttgcgatgatg 20015344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 100 - 231
Target Start/End: Complemental strand, 20007545 - 20007414
Alignment:
Q  100 aagtgaaagttcaaggaaacatagatctcatgtatgaaaagctaacagaagtagtaatgatgttgatgttccacctgaatttcctcccaatcttgttcac 199  Q
    ||||| || |||||||| |||||||||||||||| || || ||||||||||| | | |||||||| ||||||||||| ||||||||||||||||||| |     
T  20007545 aagtgcaatttcaaggagacatagatctcatgtaggacaatctaacagaagttggattgatgttggtgttccacctggatttcctcccaatcttgttgat 20007446  T
Q  200 attcttaattttggaaaattttgtgatgatgt 231  Q
      ||||  ||||||||||||||||||||||||    
T  20007445 gctcttgtttttggaaaattttgtgatgatgt 20007414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 100 - 223
Target Start/End: Original strand, 26647849 - 26647972
Alignment:
Q  100 aagtgaaagttcaaggaaacatagatctcatgtatgaaaagctaacagaagtagtaatgatgttgatgttccacctgaatttcctcccaatcttgttcac 199  Q
    ||||| |||||||||||||||||||  |  |||| |||||| ||||| |||| |||||||||||| |||||| ||||  |||||||||||||||||| ||    
T  26647849 aagtgcaagttcaaggaaacatagagtttgtgtaggaaaagataacataagtggtaatgatgttggtgttccccctggttttcctcccaatcttgttgac 26647948  T
Q  200 attcttaattttggaaaattttgt 223  Q
    | ||||| ||||||||||||||||    
T  26647949 actcttatttttggaaaattttgt 26647972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 100 - 230
Target Start/End: Complemental strand, 20033607 - 20033477
Alignment:
Q  100 aagtgaaagttcaaggaaacatagatctcatgtatgaaaagctaacagaagtagtaatgatgttgatgttccacctgaatttcctcccaatcttgttcac 199  Q
    ||||| ||||||||| |||  |||| ||| | || |||| ||||||  |||||||||||||| || |||| |||||| ||||||||||||||||||| ||    
T  20033607 aagtgcaagttcaagaaaatgtagacctcgtataggaaatgctaacgaaagtagtaatgatgatggtgttgcacctggatttcctcccaatcttgttgac 20033508  T
Q  200 attcttaattttggaaaattttgtgatgatg 230  Q
    | |||||  ||||||||||||||||||||||    
T  20033507 actcttatgtttggaaaattttgtgatgatg 20033477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 20015748 - 20015651
Alignment:
Q  1 ccgagcttgttgggtttaactctatagagcagtatctgccacatagagtaactatgcaatttggaatgtatcaagatgtttcaagttatgttcctaga 98  Q
    ||||||||||||| ||| ||||||||||||||||| ||||||| |||||  ||||||||||||||||| ||||||||||| || || |||| ||||||    
T  20015748 ccgagcttgttggatttgactctatagagcagtatttgccacacagagttgctatgcaatttggaatggatcaagatgttccaggtgatgtgcctaga 20015651  T

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Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 20033863 - 20033785
Alignment:
Q  19 actctatagagcagtatctgccacatagagtaactatgcaatttggaatgtatcaagatgtttcaagttatgttcctag 97  Q
    ||||||||||||| ||||| |||||||||||  ||||||||||||||||| ||||||||||| |||||||||| |||||    
T  20033863 actctatagagcaatatcttccacatagagttgctatgcaatttggaatggatcaagatgttccaagttatgtgcctag 20033785  T

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Target: chr3; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 80
Target Start/End: Original strand, 26647577 - 26647654
Alignment:
Q  3 gagcttgttgggtttaactctatagagcagtatctgccacatagagtaactatgcaatttggaatgtatcaagatgtt 80  Q
    ||||||||||| ||  |||||||||| ||||||||||||||||||||  ||||||||||||||||| |||||||||||    
T  26647577 gagcttgttggattcgactctatagaacagtatctgccacatagagttgctatgcaatttggaatggatcaagatgtt 26647654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 19812872 - 19812950
Alignment:
Q  19 actctatagagcagtatctgccacatagagtaactatgcaatttggaatgtatcaagatgtttcaagttatgttcctag 97  Q
    ||||||||||||| ||||| |||||||||||  ||||||||||||||||  ||||||||||| |||||||||| |||||    
T  19812872 actctatagagcaatatcttccacatagagttgctatgcaatttggaattgatcaagatgttccaagttatgtgcctag 19812950  T

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Target: chr3; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 19838964 - 19839054
Alignment:
Q  1 ccgagcttgttgggtttaactctatagagcagtatctgccacatagagtaactatgcaatttggaatgtatcaagatgtttcaagttatgt 91  Q
    ||||||||||||| ||| | ||||||||||| ||||| |||||||||||  |||||||||| |||||| ||||||||||| || |||||||    
T  19838964 ccgagcttgttggatttgagtctatagagcaatatcttccacatagagttgctatgcaattcggaatggatcaagatgttccaggttatgt 19839054  T

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Target: chr3; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 106 - 230
Target Start/End: Original strand, 19951975 - 19952099
Alignment:
Q  106 aagttcaaggaaacatagatctcatgtatgaaaagctaacagaagtagtaatgatgttgatgttccacctgaatttcctcccaatcttgttcacattctt 205  Q
    |||| |||| ||| ||||| |||||||| |||||||||||| |||| |||||| ||||| ||||||||||| ||||||| |||||  |||| | | ||||    
T  19951975 aagtccaagaaaagatagacctcatgtaggaaaagctaacataagtggtaatgttgttggtgttccacctggatttcctaccaattgtgttgaaactctt 19952074  T
Q  206 aattttggaaaattttgtgatgatg 230  Q
       |||||||| |||||||||||||    
T  19952075 gtctttggaaatttttgtgatgatg 19952099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 107 - 231
Target Start/End: Original strand, 26654000 - 26654124
Alignment:
Q  107 agttcaaggaaacatagatctcatgtatgaaaagctaacagaagtagtaatgatgttgatgttccacctgaatttcctcccaatcttgttcacattctta 206  Q
    ||||||||||||| |||| |||||||| | ||||||| || |||| ||   ||| ||  ||||||||||| ||||||||||||||||||| ||| || ||    
T  26654000 agttcaaggaaacctagagctcatgtagggaaagctagcaaaagtggtgtcgattttagtgttccacctggatttcctcccaatcttgttgacactcata 26654099  T
Q  207 attttggaaaattttgtgatgatgt 231  Q
     || |||||||||||||| ||||||    
T  26654100 tttatggaaaattttgtgctgatgt 26654124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 19951713 - 19951791
Alignment:
Q  19 actctatagagcagtatctgccacatagagtaactatgcaatttggaatgtatcaagatgtttcaagttatgttcctag 97  Q
    ||||||||||||| ||||| |||||||||||  |||||||||||| |||| ||||||||||| | |||||||| |||||    
T  19951713 actctatagagcaatatcttccacatagagttgctatgcaatttgcaatggatcaagatgttccgagttatgtgcctag 19951791  T

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Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 91
Target Start/End: Original strand, 20046693 - 20046781
Alignment:
Q  3 gagcttgttgggtttaactctatagagcagtatctgccacatagagtaactatgcaatttggaatgtatcaagatgtttcaagttatgt 91  Q
    ||||||||||| ||| | ||||||||||||||||| |||||||||||  |||||||||||||| |  | ||||||||| | ||||||||    
T  20046693 gagcttgttggatttgagtctatagagcagtatcttccacatagagtttctatgcaatttggacttgaccaagatgttccgagttatgt 20046781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 19956655 - 19956734
Alignment:
Q  1 ccgagcttgttgggtttaactctatagagcagtatctgccacatagagtaactatgcaatttggaatgtatcaagatgtt 80  Q
    ||||||| ||||| ||| | ||||||||||| ||||| |||||||||||  ||||||||||||||||  |||||||||||    
T  19956655 ccgagctggttggatttgagtctatagagcaatatcttccacatagagttgctatgcaatttggaattgatcaagatgtt 19956734  T

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Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 19849587 - 19849657
Alignment:
Q  21 tctatagagcagtatctgccacatagagtaactatgcaatttggaatgtatcaagatgtttcaagttatgt 91  Q
    ||||||||||| ||||| |||||||||||  || ||||||| |||||| ||||||||||| ||||||||||    
T  19849587 tctatagagcaatatctcccacatagagtctctttgcaattcggaatggatcaagatgttccaagttatgt 19849657  T

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Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 80
Target Start/End: Complemental strand, 20036148 - 20036071
Alignment:
Q  3 gagcttgttgggtttaactctatagagcagtatctgccacatagagtaactatgcaatttggaatgtatcaagatgtt 80  Q
    ||||| ||||| ||| | ||||||||||| ||||| |||||||||||  ||||||||||||||||  |||||||||||    
T  20036148 gagctggttggatttgagtctatagagcaatatcttccacatagagttgctatgcaatttggaattgatcaagatgtt 20036071  T

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Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 230
Target Start/End: Original strand, 19839244 - 19839368
Alignment:
Q  106 aagttcaaggaaacatagatctcatgtatgaaaagctaacagaagtagtaatgatgttgatgttccacctgaatttcctcccaatcttgttcacattctt 205  Q
    |||||||||||| | |||| |||||||| ||||   ||||| |||| ||| ||| |||  ||||| ||||| |||| |||||||||| ||| | | ||||    
T  19839244 aagttcaaggaagcgtagacctcatgtaggaaagtttaacataagtggtattgaggtttgtgttcaacctggattttctcccaatctggttgatactctt 19839343  T
Q  206 aattttggaaaattttgtgatgatg 230  Q
    | |||||||||| ||||||||||||    
T  19839344 acttttggaaaagtttgtgatgatg 19839368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 91
Target Start/End: Original strand, 26653721 - 26653809
Alignment:
Q  3 gagcttgttgggtttaactctatagagcagtatctgccacatagagtaactatgcaatttggaatgtatcaagatgtttcaagttatgt 91  Q
    ||||| ||||| ||| | ||||| ||||| ||||| |||||||||||  ||||||||||||||||  | ||||||||| ||||||||||    
T  26653721 gagctagttggatttgagtctattgagcaatatcttccacatagagttgctatgcaatttggaattgaccaagatgttccaagttatgt 26653809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 196
Target Start/End: Original strand, 19813135 - 19813224
Alignment:
Q  107 agttcaaggaaacatagatctcatgtatgaaaagctaacagaagtagtaatgatgttgatgttccacctgaatttcctcccaatcttgtt 196  Q
    |||||||| |||||  || | |||||| |||||  | |||||||| ||| || || || |||||||||||||||||||||||||||||||    
T  19813135 agttcaagaaaacaccgaccacatgtaggaaaatttgacagaagtggtattggtgctgctgttccacctgaatttcctcccaatcttgtt 19813224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 80
Target Start/End: Original strand, 19819133 - 19819210
Alignment:
Q  3 gagcttgttgggtttaactctatagagcagtatctgccacatagagtaactatgcaatttggaatgtatcaagatgtt 80  Q
    ||||||||||| ||| | || |||||||| ||||| |||||||||||  ||||||| ||||||||  |||||||||||    
T  19819133 gagcttgttggttttgagtccatagagcaatatcttccacatagagttgctatgcagtttggaattgatcaagatgtt 19819210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 184
Target Start/End: Original strand, 19849841 - 19849925
Alignment:
Q  100 aagtgaaagttcaaggaaacatagatctcatgtatgaaaagctaacagaagtagtaatgatgttgatgttccacctgaatttcct 184  Q
    ||||| ||||||||| ||||| |||  |  |||| ||||||||||||||||| |||||||||||| | |||||| || |||||||    
T  19849841 aagtgcaagttcaagaaaacaaagacattgtgtaggaaaagctaacagaagtggtaatgatgttggttttccacttggatttcct 19849925  T

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Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 80
Target Start/End: Original strand, 19832443 - 19832520
Alignment:
Q  3 gagcttgttgggtttaactctatagagcagtatctgccacatagagtaactatgcaatttggaatgtatcaagatgtt 80  Q
    ||||||||||| ||| | || |||||||| ||||| |||||||||||  |||||||  |||||||  |||||||||||    
T  19832443 gagcttgttggttttgagtccatagagcaatatcttccacatagagttgctatgcagattggaattgatcaagatgtt 19832520  T

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Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 80
Target Start/End: Original strand, 19854073 - 19854150
Alignment:
Q  3 gagcttgttgggtttaactctatagagcagtatctgccacatagagtaactatgcaatttggaatgtatcaagatgtt 80  Q
    ||||| ||||||||| | | ||||||||| ||||| |||||||||||  ||| |||||||||| |  |||||||||||    
T  19854073 gagctagttgggtttgagtttatagagcaatatctaccacatagagttgctaggcaatttggatttgatcaagatgtt 19854150  T

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Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 80
Target Start/End: Original strand, 19858645 - 19858722
Alignment:
Q  3 gagcttgttgggtttaactctatagagcagtatctgccacatagagtaactatgcaatttggaatgtatcaagatgtt 80  Q
    ||||| ||||||||| | | ||||||||| ||||| |||||||||||  |||||||||||| | |  |||||||||||    
T  19858645 gagctagttgggtttgagtttatagagcaatatctaccacatagagttgctatgcaatttgaatttgatcaagatgtt 19858722  T

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Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 20006481 - 20006412
Alignment:
Q  146 agaagtagtaatgatgttgatgttccacctgaatttcctcccaatcttgttcacattcttaattttggaa 215  Q
    |||||| ||| |||||||| |||||||  || |||||||||||||||||||  || ||||| ||||||||    
T  20006481 agaagtggtattgatgttggtgttccagatggatttcctcccaatcttgttggcactcttatttttggaa 20006412  T

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Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 230
Target Start/End: Original strand, 19956935 - 19957059
Alignment:
Q  106 aagttcaaggaaacatagatctcatgtatgaaaagctaacagaagtagtaatgatgttgatgttccacctgaatttcctcccaatcttgttcacattctt 205  Q
    |||||||||||| | |||| |||| ||| ||||   |||||||||| |||  || |||  ||||| ||||| |||| |||||||||||||| | | ||||    
T  19956935 aagttcaaggaagcgtagacctcacgtaggaaagtttaacagaagtggtatggaggtttgtgttcaacctggattttctcccaatcttgttgatactctt 19957034  T
Q  206 aattttggaaaattttgtgatgatg 230  Q
    | ||||| |||  ||||||||||||    
T  19957035 acttttgaaaatgtttgtgatgatg 19957059  T

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Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 97
Target Start/End: Original strand, 19990128 - 19990192
Alignment:
Q  33 tatctgccacatagagtaactatgcaatttggaatgtatcaagatgtttcaagttatgttcctag 97  Q
    ||||| |||||||||||  || |||||||||||||| |||||||| || ||||||| || |||||    
T  19990128 tatctcccacatagagttgctttgcaatttggaatggatcaagatattccaagttacgtgcctag 19990192  T

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Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 6 - 98
Target Start/End: Original strand, 1717796 - 1717888
Alignment:
Q  6 cttgttgggtttaactctatagagcagtatctgccacatagagtaactatgcaatttggaatgtatcaagatgtttcaagttatgttcctaga 98  Q
    |||||||| ||| |||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||| ||||| |||| ||||||    
T  1717796 cttgttggatttgactctatagagcagtatctgccacatagagttgctatgcaatttggaatggatcaagatgttccaagtgatgtgcctaga 1717888  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 108 - 206
Target Start/End: Original strand, 1718073 - 1718171
Alignment:
Q  108 gttcaaggaaacatagatctcatgtatgaaaagctaacagaagtagtaatgatgttgatgttccacctgaatttcctcccaatcttgttcacattctta 206  Q
    |||||| ||||| |||| || ||||| |||||||||||| |||| |||||||||||| ||||||||||| ||||||||||||||||||| ||| |||||    
T  1718073 gttcaacgaaacctagagctgatgtaggaaaagctaacaaaagtggtaatgatgttggtgttccacctggatttcctcccaatcttgttgacactctta 1718171  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 152 - 231
Target Start/End: Original strand, 38483818 - 38483897
Alignment:
Q  152 agtaatgatgttgatgttccacctgaatttcctcccaatcttgttcacattcttaattttggaaaattttgtgatgatgt 231  Q
    ||||||||||||| |||||||||||||||||||||  |||||||| || ||| |||||||  |||||| |||||||||||    
T  38483818 agtaatgatgttggtgttccacctgaatttcctccagatcttgttgaccttcctaattttttaaaattctgtgatgatgt 38483897  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 139 - 216
Target Start/End: Complemental strand, 22685574 - 22685497
Alignment:
Q  139 agctaacagaagtagtaatgatgttgatgttccacctgaatttcctcccaatcttgttcacattcttaattttggaaa 216  Q
    ||||||||||||| |||||||||||| ||||||||||| |||| ||  |||||||||| |||  ||||||||||||||    
T  22685574 agctaacagaagtggtaatgatgttggtgttccacctggattttctttcaatcttgttaacacacttaattttggaaa 22685497  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 11544641 - 11544720
Alignment:
Q  1 ccgagcttgttgggtttaactctatagagcagtatctgccacatagagtaactatgcaatttggaatgtatcaagatgtt 80  Q
    ||||||| ||||| ||| | ||||| ||||| ||||| |||||||||||  ||||||||||||||||| |||||||||||    
T  11544641 ccgagctagttggttttgagtctattgagcaatatcttccacatagagttgctatgcaatttggaatggatcaagatgtt 11544720  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 80
Target Start/End: Complemental strand, 22689218 - 22689141
Alignment:
Q  3 gagcttgttgggtttaactctatagagcagtatctgccacatagagtaactatgcaatttggaatgtatcaagatgtt 80  Q
    ||||| ||||| ||| | ||||||||||| ||||| |||||||||||  ||| ||| ||||||||| |||||||||||    
T  22689218 gagctagttggatttgagtctatagagcaatatctaccacatagagttgctaggcagtttggaatggatcaagatgtt 22689141  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 176
Target Start/End: Complemental strand, 22655590 - 22655520
Alignment:
Q  106 aagttcaaggaaacatagatctcatgtatgaaaagctaacagaagtagtaatgatgttgatgttccacctg 176  Q
    ||||||||||||||||||| |||||||| | |||  |||||||||| ||| ||| |||| ||||| |||||    
T  22655590 aagttcaaggaaacatagacctcatgtagggaaatttaacagaagtggtactgaagttggtgttctacctg 22655520  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 80
Target Start/End: Complemental strand, 22655861 - 22655784
Alignment:
Q  3 gagcttgttgggtttaactctatagagcagtatctgccacatagagtaactatgcaatttggaatgtatcaagatgtt 80  Q
    ||||||||||| ||| | ||||||||  | ||||| |||| ||||||  ||||||||||||||||  |||||||||||    
T  22655861 gagcttgttggatttgagtctatagaaaaatatcttccacgtagagtttctatgcaatttggaattgatcaagatgtt 22655784  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 80
Target Start/End: Complemental strand, 39191521 - 39191444
Alignment:
Q  3 gagcttgttgggtttaactctatagagcagtatctgccacatagagtaactatgcaatttggaatgtatcaagatgtt 80  Q
    ||||| ||||| ||| | ||||| ||||| ||||| |||||||||||  ||||||||||||||||| |||||||||||    
T  39191521 gagctagttggttttgagtctattgagcaatatcttccacatagagttgctatgcaatttggaatggatcaagatgtt 39191444  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 91
Target Start/End: Complemental strand, 12579633 - 12579545
Alignment:
Q  3 gagcttgttgggtttaactctatagagcagtatctgccacatagagtaactatgcaatttggaatgtatcaagatgtttcaagttatgt 91  Q
    ||||||||||| |||||  |||||||||| ||||| | |||||||||  |||| |||||||||||  | |||||| |||||||||||||    
T  12579633 gagcttgttggatttaagcctatagagcaatatcttcgacatagagtgtctatacaatttggaattgaccaagatatttcaagttatgt 12579545  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 91
Target Start/End: Original strand, 12581884 - 12581922
Alignment:
Q  53 tatgcaatttggaatgtatcaagatgtttcaagttatgt 91  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  12581884 tatgcaatttggaattgatcaagatgtttcaagttatgt 12581922  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 91
Target Start/End: Complemental strand, 12495536 - 12495448
Alignment:
Q  3 gagcttgttgggtttaactctatagagcagtatctgccacatagagtaactatgcaatttggaatgtatcaagatgtttcaagttatgt 91  Q
    ||||||||||| |||||   ||||||||| ||||| | |||||||||  |||| |||||||||||  | |||||| |||| ||||||||    
T  12495536 gagcttgttggatttaagcgtatagagcaatatcttctacatagagtgtctatacaatttggaattgaccaagatatttcgagttatgt 12495448  T

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