View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8328_low_5 (Length: 223)
Name: NF8328_low_5
Description: NF8328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8328_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 166; Significance: 5e-89; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 9 - 218
Target Start/End: Original strand, 11157271 - 11157480
Alignment:
| Q |
9 |
acatcatcattatcttcaatatacaaatttgtaagagaagtaaggctttggaaaccccattcaattaatggcggcatctttgttattctcacagatgtaa |
108 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11157271 |
acatcatcattatctttaatatacaaatttgaaagataagtaaggctttggaaaccccattcaattaatggcggcatctttgttattctcacagatgtaa |
11157370 |
T |
|
| Q |
109 |
tagaaattctttgtaatttgggaggtaagaaaactccttcacatagtgcaaactctagttttggaagatgttcgagatacaaactttcaagagtggtgat |
208 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||| |||||||||| ||||| |
|
|
| T |
11157371 |
tagaaattgtttgtaatttgggaggtaagaaaactccttcatatagtgcaaactctagttttggaagatggtggagatacaatctttcaagagcggtgag |
11157470 |
T |
|
| Q |
209 |
gatgtccatc |
218 |
Q |
| |
|
| |||||||| |
|
|
| T |
11157471 |
ggtgtccatc |
11157480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 11 - 207
Target Start/End: Original strand, 11128282 - 11128478
Alignment:
| Q |
11 |
atcatcattatcttcaatatacaaatttgtaagagaagtaaggctttggaaaccccattcaattaatggcggcatctttgttattctcacagatgtaata |
110 |
Q |
| |
|
||||||||| |||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11128282 |
atcatcattctctttaatatacaaatatgaaagagaagtaaggctttggaaaccccattcaattaatggcggcatctttgttattctcacagatgtaata |
11128381 |
T |
|
| Q |
111 |
gaaattctttgtaatttgggaggtaagaaaactccttcacatagtgcaaactctagttttggaagatgttcgagatacaaactttcaagagtggtga |
207 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||| ||||||||||||||| |
|
|
| T |
11128382 |
gaaattgtttgtaatttgggaggtaagaaaactccttcacatagtgacaactctagttttggaagatggtggagatacaaaatttcaagagtggtga |
11128478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 9 - 218
Target Start/End: Complemental strand, 8864104 - 8863895
Alignment:
| Q |
9 |
acatcatcattatcttcaatatacaaatttgtaagagaagtaaggctttggaaaccccattcaattaatggcggcatctttgttattctcacagatgtaa |
108 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
8864104 |
acatcatcattatctttaatatacaaatttgaaagataagtaaggctttggaaaccccattcaattaatggcggcatctttgttattcttacagatgtaa |
8864005 |
T |
|
| Q |
109 |
tagaaattctttgtaatttgggaggtaagaaaactccttcacatagtgcaaactctagttttggaagatgttcgagatacaaactttcaagagtggtgat |
208 |
Q |
| |
|
|| ||||| |||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| | || || ||| |||||||||||||||| |
|
|
| T |
8864004 |
tataaattgtttgcaatttgggaggtaagaaaactccttcatatagtgcaaactcaagttttggaagatggtagaaatgcaatctttcaagagtggtgag |
8863905 |
T |
|
| Q |
209 |
gatgtccatc |
218 |
Q |
| |
|
| |||||||| |
|
|
| T |
8863904 |
ggtgtccatc |
8863895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 11 - 217
Target Start/End: Original strand, 11146104 - 11146313
Alignment:
| Q |
11 |
atcatcattatcttcaatatacaaatttgtaagagaagtaaggctttggaaacccc---attcaattaatggcggcatctttgttattctcacagatgta |
107 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
11146104 |
atcatcattatcttcaattttcaaatttgtaagagaagtaaggctttggaaacccccccattcaattaatggcggcatctttgttattctcacagatgca |
11146203 |
T |
|
| Q |
108 |
atagaaattctttgtaatttgggaggtaagaaaactccttcacatagtgcaaactctagttttggaagatgttcgagatacaaactttcaagagtggtga |
207 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||| |||| |
|
|
| T |
11146204 |
atagaaattgtttgtaatttgggaggtaagaaaactccttcacatagtgacaactctagttttggaagatggcggagactcaaactttcaagagttgtga |
11146303 |
T |
|
| Q |
208 |
tgatgtccat |
217 |
Q |
| |
|
| ||||||| |
|
|
| T |
11146304 |
gggtgtccat |
11146313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 11 - 218
Target Start/End: Complemental strand, 10892122 - 10891915
Alignment:
| Q |
11 |
atcatcattatcttcaatatacaaatttgtaagagaagtaaggctttggaaaccccattcaattaatggcggcatctttgttattctcacagatgtaata |
110 |
Q |
| |
|
|||||||||||||| ||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
10892122 |
atcatcattatctttaatatacaattttgaaagataagtaaggctttggaaaccccattcaattaatggcggcatttttgttattctcacagatttaata |
10892023 |
T |
|
| Q |
111 |
gaaattctttgtaatttgggaggtaagaaaactccttcacatagtgcaaactctagttttggaagatgttcgagatacaaactttcaagagtggtgatga |
210 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| || | |||| ||||| |||||||| ||||| | |
|
|
| T |
10892022 |
gaaatggtttgtaatttgggaggtaagaaaactccttcgcatggtgcaaactctagttttggaagctgatggagactcaaacattcaagagaggtgaggg |
10891923 |
T |
|
| Q |
211 |
tgtccatc |
218 |
Q |
| |
|
|||||||| |
|
|
| T |
10891922 |
tgtccatc |
10891915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University