View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8329_high_1 (Length: 527)
Name: NF8329_high_1
Description: NF8329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8329_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 14 - 477
Target Start/End: Complemental strand, 45617928 - 45617464
Alignment:
| Q |
14 |
cagagagaaacgcaacatttcttgtctagctgttttggaacataattttgttaattaagttgaacttacatttcttgcatggtttgttgacggggttatt |
113 |
Q |
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| T |
45617928 |
cagagagaaatgcaacatttcttgtctagctgttttggaacataattttgttaattaagttgaacttacatttcttgcatggtttgttgacggggttatt |
45617829 |
T |
|
| Q |
114 |
aaaattagtgattgttttataaaattgatcaattgctgttatatgtacttgtgcaaagggtttttgtctagcnnnnnnnn-aaacttgtatttcttttca |
212 |
Q |
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| T |
45617828 |
aaaattagtgattgttttataaaattgatcaattgctgttatatgtacttgtgcaaagggtttttgtctagcttattttttaaatttgtatttcttttca |
45617729 |
T |
|
| Q |
213 |
taacttcatggatatagttatttcttcaatttcttaacgggttttatttaagaataaggaaggaaaaagaaggaaaatgataacagagaagaatgttgat |
312 |
Q |
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| T |
45617728 |
taacttcatggatatagttatttcttcaatttcttaacgggttttatttaagaataaggaaggaaaaagaaggaaaatgataacagagaagaatgttgat |
45617629 |
T |
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| Q |
313 |
attttatttaagaatgaggaagaaaaaagaaggaaagttttaatttcaaattaaccaataaaccaaactaaattgaccgttcagttttgttcagctcctc |
412 |
Q |
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| T |
45617628 |
attttatttaagaatgaggaagaaaaaagaaggaaagttttaatttcaaattaaccaataaaccaaactaaattgaccgttcagttttgttcaactcctc |
45617529 |
T |
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| Q |
413 |
tttaaaaatcattgaaaactgaacctaacgaaatcgatataaatggagtaagtcggtttcgacac |
477 |
Q |
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| T |
45617528 |
tttaaaaatcattgaaaactgaacctaaccaaatcgatataaatggagtaagtcggtttcgacac |
45617464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 17893127 - 17893208
Alignment:
| Q |
15 |
agagagaaacgcaacatttcttgtctagct---gttttggaacataattttgttaattaagttgaacttacatttcttgcat |
93 |
Q |
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|||| |||| ||||||||||||||||| || ||||||| |||||||||||||||||||||| ||||| |||||| ||||| |
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| T |
17893127 |
agagggaaatgcaacatttcttgtctaactaccgttttgggacataattttgttaattaagttaaacttgcatttcatgcat |
17893208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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