View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8329_low_10 (Length: 254)
Name: NF8329_low_10
Description: NF8329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8329_low_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 239
Target Start/End: Original strand, 4349584 - 4349807
Alignment:
| Q |
16 |
accaaactaaattaaaacatcaatatacaaaatggaaaacaacgtcccaataataaccaagagagtatggagtatgatccgtgtggctttgttcatgtta |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4349584 |
accaaactaaattaaaacatcaatatacaaaatggaaaacaacgtaccaataataaccaagagagtatggagtatgatacgtgtggctttgttcatgtta |
4349683 |
T |
|
| Q |
116 |
agaaaaggcatatccaagggaaaactaacgatggacctcaacatgatggttaaacgccgcggcaagctcgccggaaaagccattaccaacctcatgtttc |
215 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4349684 |
agaaaaggcatatcaaagggaaaactaatgatggacctcaacatgatggttaaacaccgcggcaagctcgccggaaaagccatcaccaacctcatgtttc |
4349783 |
T |
|
| Q |
216 |
atcaccaccacggtggctccacct |
239 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
4349784 |
atcaccaccacggtggctccacct |
4349807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 4352973 - 4353193
Alignment:
| Q |
18 |
caaactaaattaaaacatcaatatacaaaatggaaaacaacgtcccaataataaccaagagagtatggagtatgatccgtgtggctttgttcatgttaag |
117 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4352973 |
caaattaaattaaaacatcaatatacaaaatggaaaacaacgtaccaataataaccaagagagtatggagtatgatacgtgtggctttgttcatgttaag |
4353072 |
T |
|
| Q |
118 |
aaaaggcatatccaagggaaaactaacgatggacctcaacatgatggttaaacgccgcggcaagctcgccggaaaagccattaccaacctcatgtttcat |
217 |
Q |
| |
|
|||||| ||||| ||||||||||||| ||||||||||||||||||||| |||||||| | ||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
4353073 |
aaaaggtatatcaaagggaaaactaatgatggacctcaacatgatggtcaaacgccgtag-aagcttgccggaaaagccatcaccaacctcatgtttcat |
4353171 |
T |
|
| Q |
218 |
caccaccacggtggctccacct |
239 |
Q |
| |
|
|||||||| ||||||||||||| |
|
|
| T |
4353172 |
caccaccatggtggctccacct |
4353193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 45 - 239
Target Start/End: Complemental strand, 4359271 - 4359077
Alignment:
| Q |
45 |
aaatggaaaacaacgtcccaataataaccaagagagtatggagtatgatccgtgtggctttgttcatgttaagaaaaggcatatccaagggaaaactaac |
144 |
Q |
| |
|
|||||||||| ||||| |||||||| || |||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4359271 |
aaatggaaaataacgtaccaataattactaagagagtatggagtatgatacgtgtggccttgttcatgttaagaaaaggcatatcaaagggaaaactaat |
4359172 |
T |
|
| Q |
145 |
gatggacctcaacatgatggttaaacgccgcggcaagctcgccggaaaagccattaccaacctcatgtttcatcaccaccacggtggctccacct |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4359171 |
gatggacctcaacatgatggttaaacgccgcggcaagctcgccggaaaagccatcaccaacctcatgtttcatcaccaccatggtggctccacct |
4359077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 39 - 226
Target Start/End: Complemental strand, 43475646 - 43475459
Alignment:
| Q |
39 |
tatacaaaatggaaaacaacgtcccaataataaccaagagagtatggagtatgatccgtgtggctttgttcatgttaagaaaaggcatatccaagggaaa |
138 |
Q |
| |
|
|||| |||||||||||||| | ||| | ||| | |||| ||| ||||||||| | |||||||| || |||||||| |||||||| || || ||||| || |
|
|
| T |
43475646 |
tataaaaaatggaaaacaatctaccagtgatatcaaagaaagtgtggagtatggtacgtgtggccttcttcatgttgagaaaaggtatgtcaaagggcaa |
43475547 |
T |
|
| Q |
139 |
actaacgatggacctcaacatgatggttaaacgccgcggcaagctcgccggaaaagccattaccaacctcatgtttcatcaccaccac |
226 |
Q |
| |
|
||||| ||||| ||| ||||||||| | ||||||||| ||||||||||||||||||||||| |||| || ||||| || || |||||| |
|
|
| T |
43475546 |
actaatgatgggcctaaacatgatgctcaaacgccgcagcaagctcgccggaaaagccattgccaatctaatgttccaccatcaccac |
43475459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 44 - 213
Target Start/End: Complemental strand, 43486260 - 43486091
Alignment:
| Q |
44 |
aaaatggaaaacaacgtcccaataataaccaagagagtatggagtatgatccgtgtggctttgttcatgttaagaaaaggcatatccaagggaaaactaa |
143 |
Q |
| |
|
|||||||||||||| | ||| | ||| | |||||||| ||||||||| | ||||| || || |||||||| ||||||||||| || ||||||||||| | |
|
|
| T |
43486260 |
aaaatggaaaacaatctaccagtgatatcaaagagagtgtggagtatggtacgtgtagccttcttcatgttgagaaaaggcatttcaaagggaaaactga |
43486161 |
T |
|
| Q |
144 |
cgatggacctcaacatgatggttaaacgccgcggcaagctcgccggaaaagccattaccaacctcatgtt |
213 |
Q |
| |
|
||||| ||| ||||||||| | ||||||||| ||||||| ||||||||||||||| |||| || ||||| |
|
|
| T |
43486160 |
tgatgggcctaaacatgatgctcaaacgccgcagcaagcttgccggaaaagccattgccaatctaatgtt |
43486091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University