View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8329_low_2 (Length: 497)

Name: NF8329_low_2
Description: NF8329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8329_low_2
NF8329_low_2
[»] chr5 (26 HSPs)
chr5 (15-278)||(43235116-43235379)
chr5 (171-278)||(41427667-41427774)
chr5 (179-278)||(15051879-15051978)
chr5 (176-278)||(18843963-18844065)
chr5 (176-278)||(41688445-41688547)
chr5 (391-451)||(43233640-43233700)
chr5 (176-278)||(27339966-27340068)
chr5 (178-278)||(19579191-19579292)
chr5 (171-266)||(22645501-22645596)
chr5 (391-444)||(21256433-21256486)
chr5 (176-278)||(20321191-20321293)
chr5 (391-444)||(41949638-41949691)
chr5 (388-444)||(17823335-17823391)
chr5 (204-278)||(19042235-19042309)
chr5 (176-278)||(19377851-19377953)
chr5 (171-248)||(6852340-6852417)
chr5 (178-278)||(18051314-18051414)
chr5 (229-278)||(24648257-24648306)
chr5 (388-444)||(15543950-15544006)
chr5 (344-376)||(43235018-43235050)
chr5 (229-276)||(17624851-17624898)
chr5 (239-278)||(22984643-22984682)
chr5 (171-259)||(13341471-13341560)
chr5 (234-278)||(23172265-23172309)
chr5 (234-266)||(38158101-38158133)
chr5 (369-397)||(43234672-43234700)
[»] chr8 (24 HSPs)
chr8 (171-278)||(7489057-7489164)
chr8 (176-278)||(5922296-5922398)
chr8 (176-278)||(24414066-24414168)
chr8 (181-278)||(2040367-2040464)
chr8 (179-278)||(16752271-16752370)
chr8 (176-278)||(45403277-45403379)
chr8 (171-274)||(11879852-11879955)
chr8 (171-274)||(11897268-11897371)
chr8 (212-278)||(27836114-27836180)
chr8 (179-278)||(40541602-40541701)
chr8 (174-278)||(19704234-19704338)
chr8 (227-278)||(15294917-15294968)
chr8 (227-278)||(15475286-15475337)
chr8 (176-278)||(23142422-23142524)
chr8 (195-278)||(7262010-7262093)
chr8 (190-278)||(32424582-32424670)
chr8 (229-278)||(29384144-29384193)
chr8 (206-278)||(17566346-17566418)
chr8 (391-429)||(7275416-7275454)
chr8 (232-266)||(17647257-17647291)
chr8 (229-278)||(15761190-15761239)
chr8 (171-278)||(6811067-6811174)
chr8 (229-262)||(26574949-26574982)
chr8 (229-262)||(29384209-29384242)
[»] chr6 (25 HSPs)
chr6 (169-278)||(7223763-7223872)
chr6 (171-278)||(17103443-17103550)
chr6 (171-278)||(7918124-7918231)
chr6 (171-278)||(19748581-19748688)
chr6 (171-278)||(22498214-22498321)
chr6 (171-278)||(11327336-11327443)
chr6 (176-278)||(26053075-26053177)
chr6 (176-278)||(26073128-26073230)
chr6 (169-278)||(27890634-27890743)
chr6 (176-266)||(3573678-3573769)
chr6 (179-278)||(15527892-15527991)
chr6 (171-278)||(17543504-17543611)
chr6 (169-259)||(21354942-21355032)
chr6 (176-266)||(27614435-27614525)
chr6 (177-277)||(31108404-31108504)
chr6 (169-267)||(27233071-27233169)
chr6 (233-277)||(8275366-8275410)
chr6 (179-267)||(17250315-17250404)
chr6 (170-278)||(33592924-33593031)
chr6 (171-266)||(23898070-23898165)
chr6 (213-252)||(27890582-27890621)
chr6 (176-278)||(33583445-33583547)
chr6 (233-278)||(4841665-4841710)
chr6 (176-277)||(30912185-30912286)
chr6 (396-436)||(6823297-6823337)
[»] chr4 (26 HSPs)
chr4 (169-278)||(55476236-55476345)
chr4 (170-278)||(9770360-9770468)
chr4 (176-278)||(23064740-23064842)
chr4 (176-278)||(36121071-36121173)
chr4 (177-278)||(9911191-9911292)
chr4 (171-278)||(5375913-5376020)
chr4 (207-266)||(8010946-8011005)
chr4 (188-274)||(13551463-13551549)
chr4 (171-278)||(6346729-6346836)
chr4 (171-266)||(7045204-7045299)
chr4 (391-440)||(11814932-11814981)
chr4 (229-278)||(37240487-37240536)
chr4 (181-277)||(13023807-13023903)
chr4 (391-429)||(5444519-5444557)
chr4 (227-273)||(8367455-8367501)
chr4 (213-266)||(10143160-10143213)
chr4 (229-278)||(10394858-10394907)
chr4 (204-278)||(5943066-5943140)
chr4 (170-278)||(4157275-4157386)
chr4 (170-278)||(4157562-4157673)
chr4 (229-278)||(7452754-7452802)
chr4 (232-275)||(7045014-7045057)
chr4 (231-278)||(8889465-8889512)
chr4 (229-263)||(4157050-4157084)
chr4 (229-278)||(5361797-5361846)
chr4 (179-252)||(8409790-8409863)
[»] chr2 (21 HSPs)
chr2 (182-278)||(27523881-27523977)
chr2 (171-278)||(19262090-19262197)
chr2 (179-278)||(20034004-20034103)
chr2 (176-278)||(1405031-1405133)
chr2 (179-278)||(974586-974686)
chr2 (171-278)||(20063971-20064078)
chr2 (178-278)||(21869102-21869202)
chr2 (179-278)||(7302030-7302129)
chr2 (171-277)||(31237750-31237856)
chr2 (171-278)||(19245837-19245944)
chr2 (391-444)||(24039271-24039324)
chr2 (391-444)||(31269734-31269787)
chr2 (176-274)||(30433067-30433165)
chr2 (176-278)||(25538924-25539026)
chr2 (205-278)||(34578137-34578210)
chr2 (218-278)||(36430096-36430156)
chr2 (167-266)||(8428482-8428581)
chr2 (232-266)||(15588690-15588724)
chr2 (232-266)||(16767045-16767079)
chr2 (169-278)||(27749281-27749390)
chr2 (229-262)||(13502570-13502603)
[»] chr3 (31 HSPs)
chr3 (171-278)||(8592173-8592280)
chr3 (176-278)||(24619976-24620078)
chr3 (179-278)||(3041471-3041570)
chr3 (171-278)||(28746024-28746131)
chr3 (179-274)||(18014243-18014338)
chr3 (179-267)||(8560239-8560327)
chr3 (179-278)||(22971057-22971155)
chr3 (169-267)||(20766673-20766771)
chr3 (171-278)||(29067525-29067631)
chr3 (179-277)||(22355848-22355946)
chr3 (171-278)||(41671427-41671534)
chr3 (229-278)||(17064555-17064604)
chr3 (176-266)||(39428163-39428257)
chr3 (179-274)||(19348805-19348900)
chr3 (170-236)||(24649522-24649588)
chr3 (171-277)||(27090691-27090797)
chr3 (179-252)||(9169869-9169942)
chr3 (176-277)||(27676685-27676786)
chr3 (229-277)||(28136011-28136059)
chr3 (227-278)||(13286192-13286243)
chr3 (227-278)||(20756270-20756321)
chr3 (204-262)||(13006089-13006147)
chr3 (176-278)||(21553672-21553773)
chr3 (207-266)||(6136379-6136438)
chr3 (399-434)||(10745417-10745452)
chr3 (176-263)||(10872494-10872581)
chr3 (204-278)||(17796813-17796887)
chr3 (204-278)||(19105253-19105327)
chr3 (229-278)||(3449142-3449191)
chr3 (395-436)||(4607257-4607298)
chr3 (229-266)||(25870154-25870191)
[»] chr1 (29 HSPs)
chr1 (171-278)||(13100438-13100545)
chr1 (176-278)||(14074262-14074364)
chr1 (179-278)||(17197311-17197410)
chr1 (176-278)||(16125234-16125336)
chr1 (176-278)||(21846053-21846155)
chr1 (204-277)||(19009755-19009828)
chr1 (171-267)||(25146542-25146638)
chr1 (168-278)||(17055691-17055800)
chr1 (169-278)||(9351835-9351944)
chr1 (180-262)||(9954816-9954898)
chr1 (171-274)||(17869524-17869627)
chr1 (227-278)||(23528904-23528955)
chr1 (169-278)||(42179843-42179952)
chr1 (172-278)||(9128612-9128719)
chr1 (176-278)||(12002640-12002740)
chr1 (178-278)||(8773516-8773613)
chr1 (170-272)||(27502128-27502230)
chr1 (171-278)||(18304592-18304692)
chr1 (391-443)||(9906092-9906144)
chr1 (206-278)||(16434757-16434829)
chr1 (212-261)||(9321550-9321599)
chr1 (171-250)||(13276033-13276109)
chr1 (395-440)||(35267763-35267808)
chr1 (171-266)||(41032547-41032642)
chr1 (229-278)||(47786106-47786155)
chr1 (171-222)||(9954770-9954821)
chr1 (229-263)||(17055999-17056033)
chr1 (229-278)||(22789431-22789480)
chr1 (234-278)||(30619190-30619234)
[»] chr7 (35 HSPs)
chr7 (176-278)||(17811596-17811698)
chr7 (179-278)||(25842513-25842612)
chr7 (176-278)||(8304334-8304436)
chr7 (170-278)||(4247604-4247712)
chr7 (176-278)||(24989553-24989654)
chr7 (176-278)||(5715533-5715631)
chr7 (179-258)||(1981107-1981186)
chr7 (176-278)||(20570664-20570766)
chr7 (176-276)||(5058778-5058878)
chr7 (391-444)||(7737093-7737146)
chr7 (188-274)||(9685085-9685171)
chr7 (179-278)||(23618211-23618310)
chr7 (176-278)||(44944624-44944726)
chr7 (170-276)||(11326533-11326639)
chr7 (179-264)||(27221676-27221762)
chr7 (391-444)||(41832418-41832472)
chr7 (205-278)||(24725280-24725353)
chr7 (229-266)||(1977808-1977845)
chr7 (229-278)||(8329876-8329925)
chr7 (229-278)||(26565380-26565429)
chr7 (229-278)||(39182404-39182453)
chr7 (171-278)||(8572385-8572491)
chr7 (231-278)||(14055505-14055552)
chr7 (231-278)||(14365533-14365580)
chr7 (171-253)||(10285677-10285759)
chr7 (205-278)||(4574978-4575051)
chr7 (229-278)||(8346363-8346412)
chr7 (176-260)||(26281169-26281251)
chr7 (388-436)||(34512642-34512690)
chr7 (232-278)||(8329814-8329860)
chr7 (395-440)||(219320-219364)
chr7 (229-278)||(8343634-8343683)
chr7 (229-278)||(21157525-21157574)
chr7 (229-277)||(7730191-7730239)
chr7 (204-252)||(8253991-8254039)
[»] scaffold0186 (1 HSPs)
scaffold0186 (179-267)||(8700-8788)
[»] scaffold0079 (1 HSPs)
scaffold0079 (179-278)||(14708-14807)
[»] scaffold0017 (1 HSPs)
scaffold0017 (171-278)||(38301-38407)
[»] scaffold0016 (1 HSPs)
scaffold0016 (171-278)||(56199-56306)
[»] scaffold2084 (1 HSPs)
scaffold2084 (179-273)||(81-175)
[»] scaffold0061 (1 HSPs)
scaffold0061 (169-278)||(76081-76189)
[»] scaffold0526 (1 HSPs)
scaffold0526 (168-267)||(8415-8514)
[»] scaffold0525 (1 HSPs)
scaffold0525 (391-444)||(2301-2354)
[»] scaffold0027 (1 HSPs)
scaffold0027 (227-278)||(132945-132996)
[»] scaffold0417 (1 HSPs)
scaffold0417 (210-276)||(7268-7334)
[»] scaffold0534 (1 HSPs)
scaffold0534 (206-278)||(918-990)
[»] scaffold0182 (1 HSPs)
scaffold0182 (190-266)||(24646-24722)
[»] scaffold0603 (1 HSPs)
scaffold0603 (232-278)||(8794-8840)
[»] scaffold0263 (1 HSPs)
scaffold0263 (391-425)||(22723-22757)
[»] scaffold0862 (1 HSPs)
scaffold0862 (391-439)||(39-88)
[»] scaffold0028 (1 HSPs)
scaffold0028 (229-278)||(145836-145885)
[»] scaffold0150 (1 HSPs)
scaffold0150 (231-278)||(33186-33233)
[»] scaffold0042 (2 HSPs)
scaffold0042 (231-278)||(93539-93586)
scaffold0042 (229-262)||(93602-93635)
[»] scaffold0048 (2 HSPs)
scaffold0048 (232-278)||(48497-48543)
scaffold0048 (229-278)||(61146-61195)
[»] scaffold0001 (2 HSPs)
scaffold0001 (232-278)||(142877-142923)
scaffold0001 (396-436)||(144923-144963)
[»] scaffold0510 (1 HSPs)
scaffold0510 (229-266)||(36-73)
[»] scaffold1412 (1 HSPs)
scaffold1412 (396-436)||(25-65)


Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 15 - 278
Target Start/End: Complemental strand, 43235379 - 43235116
Alignment:
Q  15 atgaaaatgatattaataaagttccatgaagctgcaattgaaatgaaggaaatggtcaggatataatgcacctccacatgaaaatcaagcacccatcgcc 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||  |||||||||||    
T  43235379 atgaaaatgatattaataaagttccatgaagctgcaattgaaatgaaggaaatggtaaggatataatgcacctccacataaaaatcagccacccatcgcc 43235280  T
Q  115 gctgcactttatagctgcaactatccaccatatgtgccgactcaaaaactttgaatcaagtttgtcaaaatcgggactttacttcgagacgaaagggaat 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  43235279 gctgcactttatagctgcaactatccaccatatgtgccgactcaaaaactttgaatcaaggttgtcaaaattgggactttacttcgagacgaaagggaat 43235180  T
Q  215 agcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  43235179 agcaaaatcagtactcataaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 43235116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 171 - 278
Target Start/End: Complemental strand, 41427774 - 41427667
Alignment:
Q  171 caagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaac 270  Q
    |||| |||||||||||| |||||||||||||| ||||||||| |||||||||  | |||||||||||||||||||||||||||||||||||||| || ||    
T  41427774 caaggttgtcaaaatcgagactttacttcgagtcgaaagggagtagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttactcgaggac 41427675  T
Q  271 ttttgtag 278  Q
    ||||||||    
T  41427674 ttttgtag 41427667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 179 - 278
Target Start/End: Original strand, 15051879 - 15051978
Alignment:
Q  179 tcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    ||||||||||||||||||||| || ||||| ||| |||||||||  | ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  15051879 tcaaaatcgggactttacttcaagtcgaaaaggagtagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtag 15051978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 176 - 278
Target Start/End: Complemental strand, 18844065 - 18843963
Alignment:
Q  176 ttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttg 275  Q
    ||||||||||||| ||||||||||  | |||||||||||||||||||  | ||||||||||||||||||||||||| || |||||||||||| |||||||    
T  18844065 ttgtcaaaatcggaactttacttcaggtcgaaagggaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcggagtattttactcaaggacttttg 18843966  T
Q  276 tag 278  Q
    |||    
T  18843965 tag 18843963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 176 - 278
Target Start/End: Original strand, 41688445 - 41688547
Alignment:
Q  176 ttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttg 275  Q
    |||||||||||||||||||||||   |||||||||||||||||||||  | |||| ||||||||||| |||||||||||||||||||| ||| |||||||    
T  41688445 ttgtcaaaatcgggactttactttaggacgaaagggaatagcaaaatcgggactcctaaaatcgcaaccaaaatcgaaggattttacttaaggacttttg 41688544  T
Q  276 tag 278  Q
    |||    
T  41688545 tag 41688547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 391 - 451
Target Start/End: Complemental strand, 43233700 - 43233640
Alignment:
Q  391 caaatgcttatccaacaagaggaaaccacaactcaaggtttaaccacttggaggtgttctt 451  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  43233700 caaatgcttatccaacaagaggaaaccacaactcaaggtgtaaccacttggaggtgttctt 43233640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 176 - 278
Target Start/End: Original strand, 27339966 - 27340068
Alignment:
Q  176 ttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttg 275  Q
    ||||||||||||| |||||||||| ||  ||||||||||||||||||    | |||| |||||||||||||||||||||||||||||||| | |||||||    
T  27339966 ttgtcaaaatcggaactttacttcaagttgaaagggaatagcaaaatcgaaaatcgtgaaatcgcaatcaaaatcgaaggattttactcacggacttttg 27340065  T
Q  276 tag 278  Q
    |||    
T  27340066 tag 27340068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 178 - 278
Target Start/End: Complemental strand, 19579292 - 19579191
Alignment:
Q  178 gtcaaaatcgggactttacttcgagacgaaagggaata-gcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgt 276  Q
    ||||||||||||| ||||||||  | ||||||||| || |||||||| | |||| |||||||||||||||||||||||||||| ||||||| ||||||||    
T  19579292 gtcaaaatcgggattttacttcaggtcgaaagggagtaagcaaaattgggactcataaaatcgcaatcaaaatcgaaggatttcactcaaggacttttgt 19579193  T
Q  277 ag 278  Q
    ||    
T  19579192 ag 19579191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 171 - 266
Target Start/End: Original strand, 22645501 - 22645596
Alignment:
Q  171 caagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaa 266  Q
    |||| |||||||| |||| ||||||||||  | | ||||||||||||||||||   ||||||||||| ||||||||||||||||||||||||||||    
T  22645501 caaggttgtcaaagtcggaactttacttctggtctaaagggaatagcaaaattgagactcgtaaaattgcaatcaaaatcgaaggattttactcaa 22645596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 391 - 444
Target Start/End: Complemental strand, 21256486 - 21256433
Alignment:
Q  391 caaatgcttatccaacaagaggaaaccacaactcaaggtttaaccacttggagg 444  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  21256486 caaatgcttatccaacaagaggaaaccacaactcaaggtgtaaccacttggagg 21256433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 176 - 278
Target Start/End: Complemental strand, 20321293 - 20321191
Alignment:
Q  176 ttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttg 275  Q
    |||||||||| |||||||||||||  | | ||| ||||||| |||||  | |||| |||||||||||||||||| ||||||||||||| ||| |||||||    
T  20321293 ttgtcaaaattgggactttacttcaggtcaaaaaggaatagtaaaatcgggactcataaaatcgcaatcaaaattgaaggattttactgaaggacttttg 20321194  T
Q  276 tag 278  Q
    |||    
T  20321193 tag 20321191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 391 - 444
Target Start/End: Original strand, 41949638 - 41949691
Alignment:
Q  391 caaatgcttatccaacaagaggaaaccacaactcaaggtttaaccacttggagg 444  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  41949638 caaatgcttatccaacaagaggaaaccacaactcaatgtgtaaccacttggagg 41949691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 388 - 444
Target Start/End: Complemental strand, 17823391 - 17823335
Alignment:
Q  388 aagcaaatgcttatccaacaagaggaaaccacaactcaaggtttaaccacttggagg 444  Q
    |||||||||||||| |||||||| ||||||| || ||||||||||||||||||||||    
T  17823391 aagcaaatgcttattcaacaagaagaaaccataattcaaggtttaaccacttggagg 17823335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 204 - 278
Target Start/End: Original strand, 19042235 - 19042309
Alignment:
Q  204 cgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    ||||||| |||||||||||  | |||||||||||| |||| |||||||||| |||||||| ||| ||||||||||    
T  19042235 cgaaaggaaatagcaaaatagggactcgtaaaatcacaattaaaatcgaagaattttacttaaggacttttgtag 19042309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 176 - 278
Target Start/End: Complemental strand, 19377953 - 19377851
Alignment:
Q  176 ttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttg 275  Q
    |||||||| || | |||||||||  ||  ||||||||||||||||||    | ||||||| |  |||||||||||||||||||||||||||| |||||||    
T  19377953 ttgtcaaagtcagtactttactttaagtggaaagggaatagcaaaatcgagaatcgtaaatttacaatcaaaatcgaaggattttactcaaggacttttg 19377854  T
Q  276 tag 278  Q
    |||    
T  19377853 tag 19377851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 171 - 248
Target Start/End: Original strand, 6852340 - 6852417
Alignment:
Q  171 caagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaa 248  Q
    |||| |||||||||||||||||| |||||  | |||||||||||||||||||  | |||| |||||| ||||||||||    
T  6852340 caaggttgtcaaaatcgggacttcacttcaggtcgaaagggaatagcaaaatcgggactcataaaattgcaatcaaaa 6852417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 278
Target Start/End: Original strand, 18051314 - 18051414
Alignment:
Q  178 gtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgta 277  Q
    ||||||||||||| |||||||   | ||||||||||||| |||||  | ||| ||| |||||||||||||||| ||| |||||| | ||| |||||||||    
T  18051314 gtcaaaatcgggattttactttaggtcgaaagggaatagaaaaatcgggacttgtagaatcgcaatcaaaatcaaagaattttattgaaggacttttgta 18051413  T
Q  278 g 278  Q
    |    
T  18051414 g 18051414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 229 - 278
Target Start/End: Complemental strand, 24648306 - 24648257
Alignment:
Q  229 tcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    ||||||||||| |||||||||| |||||||||||||||  ||||||||||    
T  24648306 tcgtaaaatcgtaatcaaaatcaaaggattttactcaactacttttgtag 24648257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 444
Target Start/End: Original strand, 15543950 - 15544006
Alignment:
Q  388 aagcaaatgcttatccaacaagaggaaaccacaactcaaggtttaaccacttggagg 444  Q
    |||| |||||||||||||||| | |||||||||||| |||||||| || ||||||||    
T  15543950 aagcgaatgcttatccaacaaaaagaaaccacaacttaaggtttacccgcttggagg 15544006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 376
Target Start/End: Complemental strand, 43235050 - 43235018
Alignment:
Q  344 taagtatatgttataaatggtttatagacataa 376  Q
    |||||||||||||||||||||||||||||||||    
T  43235050 taagtatatgttataaatggtttatagacataa 43235018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 276
Target Start/End: Complemental strand, 17624898 - 17624851
Alignment:
Q  229 tcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgt 276  Q
    |||||||||||||||||||||| || ||||||||||||  ||||||||    
T  17624898 tcgtaaaatcgcaatcaaaatcaaaagattttactcaactacttttgt 17624851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 278
Target Start/End: Original strand, 22984643 - 22984682
Alignment:
Q  239 gcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    ||||||||||||||||||||||||||||| | ||||||||    
T  22984643 gcaatcaaaatcgaaggattttactcaaggaattttgtag 22984682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 259
Target Start/End: Original strand, 13341471 - 13341560
Alignment:
Q  171 caagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaatt-agtactcgtaaaatcgcaatcaaaatcgaaggattt 259  Q
    |||| ||||||||||||||| ||| |||| |  ||||||||||||| |||||| |  | |||||||||||||| | |||| |||||||||    
T  13341471 caaggttgtcaaaatcgggattttgcttcaaatcgaaagggaatagaaaaattgaaaaatcgtaaaatcgcaaacgaaattgaaggattt 13341560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 278
Target Start/End: Original strand, 23172265 - 23172309
Alignment:
Q  234 aaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    |||||| |||||||||||||| |||||||||||  ||||||||||    
T  23172265 aaatcgtaatcaaaatcgaagaattttactcaaagacttttgtag 23172309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 266
Target Start/End: Original strand, 38158101 - 38158133
Alignment:
Q  234 aaatcgcaatcaaaatcgaaggattttactcaa 266  Q
    ||||||||| |||||||||||||||||||||||    
T  38158101 aaatcgcaaccaaaatcgaaggattttactcaa 38158133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 397
Target Start/End: Complemental strand, 43234700 - 43234672
Alignment:
Q  369 agacataaggtaagtaagaaagcaaatgc 397  Q
    |||||||||||||||||||||||||||||    
T  43234700 agacataaggtaagtaagaaagcaaatgc 43234672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 6e-35; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 171 - 278
Target Start/End: Original strand, 7489057 - 7489164
Alignment:
Q  171 caagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaac 270  Q
    |||| ||||||||||| |||||||||||| || ||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||    
T  7489057 caaggttgtcaaaatcaggactttacttcaagtcgaaaggaaatagcaaaattaggactcgtaaaatcgcaatcaaaatcggaggattttactcaaggac 7489156  T
Q  271 ttttgtag 278  Q
    ||||||||    
T  7489157 ttttgtag 7489164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 176 - 278
Target Start/End: Complemental strand, 5922398 - 5922296
Alignment:
Q  176 ttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttg 275  Q
    ||||||||||||||||||||||||  | ||||||||||||||||||| || ||  ||| |||||||||||||||||||||||||||||||||||||||||    
T  5922398 ttgtcaaaatcgggactttacttcaggtcgaaagggaatagcaaaatcagaacatgtacaatcgcaatcaaaatcgaaggattttactcaagaacttttg 5922299  T
Q  276 tag 278  Q
    |||    
T  5922298 tag 5922296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 176 - 278
Target Start/End: Original strand, 24414066 - 24414168
Alignment:
Q  176 ttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttg 275  Q
    |||||||||| || ||||||||||  | ||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  24414066 ttgtcaaaattggaactttacttcatgtcgaaagggaatagcaaaatttagactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaatttttg 24414165  T
Q  276 tag 278  Q
    |||    
T  24414166 tag 24414168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 181 - 278
Target Start/End: Complemental strand, 2040464 - 2040367
Alignment:
Q  181 aaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    ||||||||||||||||||| || |||||| || |||||||||  | ||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  2040464 aaaatcgggactttacttcaagtcgaaagagagtagcaaaatcggaactcgtaaaatcgcaatcaaaatcgaaggattttactcatggacttttgtag 2040367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 179 - 278
Target Start/End: Complemental strand, 16752370 - 16752271
Alignment:
Q  179 tcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    ||||||| || |||||||||| || ||||||||| |||||||||| | |||||||||||||||| |||||||||||||||||||||||| | ||||||||    
T  16752370 tcaaaattggaactttacttcaagtcgaaagggagtagcaaaattgggactcgtaaaatcgcaaacaaaatcgaaggattttactcaaggaattttgtag 16752271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 176 - 278
Target Start/End: Complemental strand, 45403379 - 45403277
Alignment:
Q  176 ttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttg 275  Q
    |||||||||||||||||||| |||  | |||||||||||||||||||    ||||||||||||||||||||||||||||||||||||| ||  |||||||    
T  45403379 ttgtcaaaatcgggactttatttcacgtcgaaagggaatagcaaaatcgagactcgtaaaatcgcaatcaaaatcgaaggattttacttaaagacttttg 45403280  T
Q  276 tag 278  Q
    |||    
T  45403279 tag 45403277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 171 - 274
Target Start/End: Complemental strand, 11879955 - 11879852
Alignment:
Q  171 caagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaac 270  Q
    |||| ||||||||||||||| ||||||||  | | ||||||||||| |||||  | ||||||||||||||||||||||||||||||||||||  ||||||    
T  11879955 caaggttgtcaaaatcgggattttacttcaggtcaaaagggaatagtaaaatcggaactcgtaaaatcgcaatcaaaatcgaaggattttacctaagaac 11879856  T
Q  271 tttt 274  Q
    ||||    
T  11879855 tttt 11879852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 171 - 274
Target Start/End: Complemental strand, 11897371 - 11897268
Alignment:
Q  171 caagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaac 270  Q
    |||| ||||||||||||||| ||||||||  | | ||||||||||| |||||  | ||||||||||||||||||||||||||||||||||||  ||||||    
T  11897371 caaggttgtcaaaatcgggattttacttcaggtcaaaagggaatagtaaaatcggaactcgtaaaatcgcaatcaaaatcgaaggattttacctaagaac 11897272  T
Q  271 tttt 274  Q
    ||||    
T  11897271 tttt 11897268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 212 - 278
Target Start/End: Original strand, 27836114 - 27836180
Alignment:
Q  212 aatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  27836114 aatagcaaaattaggattcgtaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtag 27836180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 179 - 278
Target Start/End: Original strand, 40541602 - 40541701
Alignment:
Q  179 tcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    ||||||||||||||||||||| || ||||||| | |||||||||  | ||||||||||||||||||||||| ||| ||||||| ||||| |||| |||||    
T  40541602 tcaaaatcgggactttacttcaagtcgaaaggaagtagcaaaatcgggactcgtaaaatcgcaatcaaaattgaaagattttattcaaggacttctgtag 40541701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 174 - 278
Target Start/End: Original strand, 19704234 - 19704338
Alignment:
Q  174 gtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttt 273  Q
    |||||| | ||| |||| |||||||| || | |||||||||||||||||  | |||||||||||||||||||||||| ||||| |||||||||| ||| |    
T  19704234 gtttgttagaattgggattttacttcaagtccaaagggaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcaaaggaatttactcaaggactgt 19704333  T
Q  274 tgtag 278  Q
    |||||    
T  19704334 tgtag 19704338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 227 - 278
Target Start/End: Complemental strand, 15294968 - 15294917
Alignment:
Q  227 actcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  15294968 actcctaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 15294917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 227 - 278
Target Start/End: Complemental strand, 15475337 - 15475286
Alignment:
Q  227 actcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  15475337 actcctaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 15475286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 176 - 278
Target Start/End: Complemental strand, 23142524 - 23142422
Alignment:
Q  176 ttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttg 275  Q
    ||||||||||| |||||||| ||| |  ||||||||||||||||||   ||| |||||||||||||||  |||||||| ||||||| |||| ||||||||    
T  23142524 ttgtcaaaatcaggactttatttcaattcgaaagggaatagcaaaaccggtaatcgtaaaatcgcaatttaaatcgaatgattttagtcaaaaacttttg 23142425  T
Q  276 tag 278  Q
    |||    
T  23142424 tag 23142422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 195 - 278
Target Start/End: Complemental strand, 7262093 - 7262010
Alignment:
Q  195 acttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    ||||| || ||||||| | |||||||||  | |||||||||||||||||||||||  |||||||||||||||| ||||||||||    
T  7262093 acttccagtcgaaaggaagtagcaaaatcgggactcgtaaaatcgcaatcaaaattaaaggattttactcaaggacttttgtag 7262010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 190 - 278
Target Start/End: Complemental strand, 32424670 - 32424582
Alignment:
Q  190 actttacttcgaga-cgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    |||||||||| ||| |||| |||||||||||| |  | ||||||||||||||||| ||||||||||||||||||||||| | ||||||||    
T  32424670 actttacttcaagatcgaaggggaatagcaaa-tcggaactcgtaaaatcgcaattaaaatcgaaggattttactcaaggagttttgtag 32424582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 229 - 278
Target Start/End: Original strand, 29384144 - 29384193
Alignment:
Q  229 tcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    |||||||||||||| |||||||||||||||||||||||  ||||||||||    
T  29384144 tcgtaaaatcgcaaccaaaatcgaaggattttactcaactacttttgtag 29384193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 206 - 278
Target Start/End: Complemental strand, 17566418 - 17566346
Alignment:
Q  206 aaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    |||||||| |||||||||   | ||||||||| |||||||||||||||| |||||||||||  ||||||||||    
T  17566418 aaagggaagagcaaaattgaaaatcgtaaaattgcaatcaaaatcgaagaattttactcaactacttttgtag 17566346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 429
Target Start/End: Original strand, 7275416 - 7275454
Alignment:
Q  391 caaatgcttatccaacaagaggaaaccacaactcaaggt 429  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  7275416 caaaggcttatccaacaagaggaaaccacaactcaaggt 7275454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 232 - 266
Target Start/End: Complemental strand, 17647291 - 17647257
Alignment:
Q  232 taaaatcgcaatcaaaatcgaaggattttactcaa 266  Q
    |||||||||||||||||||||||||||||||||||    
T  17647291 taaaatcgcaatcaaaatcgaaggattttactcaa 17647257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 229 - 278
Target Start/End: Original strand, 15761190 - 15761239
Alignment:
Q  229 tcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    |||||||||||||||  |||||||||||||||||||||  ||||||||||    
T  15761190 tcgtaaaatcgcaatataaatcgaaggattttactcaattacttttgtag 15761239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 278
Target Start/End: Complemental strand, 6811174 - 6811067
Alignment:
Q  171 caagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaac 270  Q
    |||| ||||||||||||| |||||  ||| |  |||||| ||| ||||||||    | |||||||||||||| ||||||||||| |||||| ||||  ||    
T  6811174 caaggttgtcaaaatcggaactttgtttcaaatcgaaagagaagagcaaaatcgacaatcgtaaaatcgcaaccaaaatcgaagaattttaatcaactac 6811075  T
Q  271 ttttgtag 278  Q
    ||||||||    
T  6811074 ttttgtag 6811067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 262
Target Start/End: Original strand, 26574949 - 26574982
Alignment:
Q  229 tcgtaaaatcgcaatcaaaatcgaaggattttac 262  Q
    ||||||||||||||||||||| ||||||||||||    
T  26574949 tcgtaaaatcgcaatcaaaattgaaggattttac 26574982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 262
Target Start/End: Original strand, 29384209 - 29384242
Alignment:
Q  229 tcgtaaaatcgcaatcaaaatcgaaggattttac 262  Q
    |||||||||||||||||||||||| |||||||||    
T  29384209 tcgtaaaatcgcaatcaaaatcgatggattttac 29384242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 1e-33; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 169 - 278
Target Start/End: Complemental strand, 7223872 - 7223763
Alignment:
Q  169 atcaagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaaga 268  Q
    |||||| ||||||||||||||||||||||||  | |||||||||||||||||||  | ||||||||||| |||||||||||||||||||||||||||||     
T  7223872 atcaaggttgtcaaaatcgggactttacttcaggtcgaaagggaatagcaaaatcgggactcgtaaaattgcaatcaaaatcgaaggattttactcaagg 7223773  T
Q  269 acttttgtag 278  Q
    ||||||||||    
T  7223772 acttttgtag 7223763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 171 - 278
Target Start/End: Complemental strand, 17103550 - 17103443
Alignment:
Q  171 caagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaac 270  Q
    |||| |||||||||||||||||||||||| || |||||||||||| |||||| || |||||||||||||||||||| | |||||||||||||||||| ||    
T  17103550 caaggttgtcaaaatcgggactttacttcaagtcgaaagggaataacaaaatcaggactcgtaaaatcgcaatcaataccgaaggattttactcaaggac 17103451  T
Q  271 ttttgtag 278  Q
    ||||||||    
T  17103450 ttttgtag 17103443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 171 - 278
Target Start/End: Original strand, 7918124 - 7918231
Alignment:
Q  171 caagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaac 270  Q
    |||| |||||||||||||| |||||||||  | ||||||||||||||| ||| || ||||||||||| |||||||||||||||| |||||||||||| ||    
T  7918124 caaggttgtcaaaatcggggctttacttcaggtcgaaagggaatagcagaatcaggactcgtaaaattgcaatcaaaatcgaagaattttactcaaggac 7918223  T
Q  271 ttttgtag 278  Q
    ||||||||    
T  7918224 ttttgtag 7918231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 171 - 278
Target Start/End: Complemental strand, 19748688 - 19748581
Alignment:
Q  171 caagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaac 270  Q
    |||| |||||||||||||||||||| |||  |  ||||||||||||||||||  | | ||||||||||||||||||||||||||||||||||||||| ||    
T  19748688 caaggttgtcaaaatcgggactttaattcaggttgaaagggaatagcaaaatcgggattcgtaaaatcgcaatcaaaatcgaaggattttactcaaggac 19748589  T
Q  271 ttttgtag 278  Q
    ||||||||    
T  19748588 ttttgtag 19748581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 171 - 278
Target Start/End: Original strand, 22498214 - 22498321
Alignment:
Q  171 caagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaac 270  Q
    |||| |||||||||| |||||||||||||  | |||||||||||||||||||| | ||||||||||||||||||||||| ||| ||||||||||||  ||    
T  22498214 caaggttgtcaaaattgggactttacttcaggtcgaaagggaatagcaaaattgggactcgtaaaatcgcaatcaaaattgaacgattttactcaaagac 22498313  T
Q  271 ttttgtag 278  Q
    ||||||||    
T  22498314 ttttgtag 22498321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 171 - 278
Target Start/End: Original strand, 11327336 - 11327443
Alignment:
Q  171 caagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaac 270  Q
    |||| |||||||||||||| |||||||||  |  ||||||||||||||||||    |||||||||||||||||||||||||||| |||||||||||| ||    
T  11327336 caaggttgtcaaaatcggggctttacttcaggttgaaagggaatagcaaaatcgagactcgtaaaatcgcaatcaaaatcgaagaattttactcaaggac 11327435  T
Q  271 ttttgtag 278  Q
    ||||||||    
T  11327436 ttttgtag 11327443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 176 - 278
Target Start/End: Original strand, 26053075 - 26053177
Alignment:
Q  176 ttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttg 275  Q
    ||||||||||| ||||||||||||  | ||||||| |||||||||||| | |||||||||||| |||||||||||||| ||||||||||||  |||||||    
T  26053075 ttgtcaaaatcaggactttacttcaggtcgaaaggaaatagcaaaattgggactcgtaaaatcccaatcaaaatcgaatgattttactcaatgacttttg 26053174  T
Q  276 tag 278  Q
    |||    
T  26053175 tag 26053177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 176 - 278
Target Start/End: Original strand, 26073128 - 26073230
Alignment:
Q  176 ttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttg 275  Q
    ||||||||||| ||||||||||||  | ||||||| |||||||||||| | |||||||||||| |||||||||||||| ||||||||||||  |||||||    
T  26073128 ttgtcaaaatcaggactttacttcaggtcgaaaggaaatagcaaaattgggactcgtaaaatcccaatcaaaatcgaatgattttactcaatgacttttg 26073227  T
Q  276 tag 278  Q
    |||    
T  26073228 tag 26073230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 169 - 278
Target Start/End: Complemental strand, 27890743 - 27890634
Alignment:
Q  169 atcaagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaaga 268  Q
    |||||| |||||||| ||| ||||||||||| ||  |||||||| ||| |||||| | ||||||||||||| ||||||||| |||||||||||||||||     
T  27890743 atcaaggttgtcaaattcgagactttacttcaagttgaaagggagtagtaaaattggaactcgtaaaatcgtaatcaaaattgaaggattttactcaagg 27890644  T
Q  269 acttttgtag 278  Q
    ||||||||||    
T  27890643 acttttgtag 27890634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 176 - 266
Target Start/End: Original strand, 3573678 - 3573769
Alignment:
Q  176 ttgtcaaaatcgggactttacttcgagacgaaa-gggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaa 266  Q
    ||||||||||||||||||||||||  | ||||| |||||||||||||| || ||||||||||||||||||||||||| |||| |||||||||    
T  3573678 ttgtcaaaatcgggactttacttcaggtcgaaaagggaatagcaaaatcaggactcgtaaaatcgcaatcaaaatcgtaggaatttactcaa 3573769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 179 - 278
Target Start/End: Original strand, 15527892 - 15527991
Alignment:
Q  179 tcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    ||||||||  |||||||||||  | ||||||| |||||||||||  | ||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  15527892 tcaaaatcctgactttacttcaggtcgaaaggaaatagcaaaatcggaactcggaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtag 15527991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 171 - 278
Target Start/End: Original strand, 17543504 - 17543611
Alignment:
Q  171 caagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaac 270  Q
    |||| |||| ||||| |||||||||||||  | ||||| |||||||||||||  | |||| |||||||| ||||||||||||||||||||||||||| ||    
T  17543504 caaggttgttaaaattgggactttacttcaggtcgaaaaggaatagcaaaatcgggactcataaaatcgaaatcaaaatcgaaggattttactcaaggac 17543603  T
Q  271 ttttgtag 278  Q
    ||||||||    
T  17543604 ttttgtag 17543611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 169 - 259
Target Start/End: Complemental strand, 21355032 - 21354942
Alignment:
Q  169 atcaagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattt 259  Q
    |||||| |||||||||| |||| |||||||| ||  |||||||||||| ||||| || |||||||||||||||||||||||||| ||||||    
T  21355032 atcaaggttgtcaaaattgggattttacttcaagttgaaagggaatagaaaaatcaggactcgtaaaatcgcaatcaaaatcgatggattt 21354942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 176 - 266
Target Start/End: Original strand, 27614435 - 27614525
Alignment:
Q  176 ttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaa 266  Q
    ||||||||||  ||| ||||||||  | ||||||||||||| |||||  | |||||||||||| |||||||||||||||||||||||||||    
T  27614435 ttgtcaaaattaggaatttacttcaggtcgaaagggaatagtaaaatcgggactcgtaaaatcacaatcaaaatcgaaggattttactcaa 27614525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 177 - 277
Target Start/End: Complemental strand, 31108504 - 31108404
Alignment:
Q  177 tgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgt 276  Q
    |||||||||| ||||||||||||  | |||||||||||||||||||    | |||||||| ||||||||||||| || ||||||||| ||| ||||||||    
T  31108504 tgtcaaaatcaggactttacttcaggtcgaaagggaatagcaaaatcgagattcgtaaaaccgcaatcaaaatcaaaagattttactaaaggacttttgt 31108405  T
Q  277 a 277  Q
    |    
T  31108404 a 31108404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 169 - 267
Target Start/End: Original strand, 27233071 - 27233169
Alignment:
Q  169 atcaagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaag 267  Q
    |||||| |||||||||||| | |||||||||  | | |||||||||  ||||||  | |||| |||||||||||||||||| |||||||||||||||||    
T  27233071 atcaaggttgtcaaaatcgagcctttacttcaggtcaaaagggaatgacaaaatcgggactcataaaatcgcaatcaaaattgaaggattttactcaag 27233169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 8275366 - 8275410
Alignment:
Q  233 aaaatcgcaatcaaaatcgaaggattttactcaagaacttttgta 277  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||    
T  8275366 aaaatcgcaattaaaatcgaaggattttactcaaggacttttgta 8275410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 179 - 267
Target Start/End: Complemental strand, 17250404 - 17250315
Alignment:
Q  179 tcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaat--cgaaggattttactcaag 267  Q
    |||||||||||||||||||||  | ||||||| ||| || || || | |||||||||||||||||||||||   |||||||||||||||||    
T  17250404 tcaaaatcgggactttacttcaggtcgaaaggaaatggcgaa-ttgggactcgtaaaatcgcaatcaaaataaagaaggattttactcaag 17250315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 170 - 278
Target Start/End: Original strand, 33592924 - 33593031
Alignment:
Q  170 tcaagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaa 269  Q
    ||||| ||||||||||||||| ||| ||||    |||||||||||| |||||||   | ||||||||| |||||| |||||||| || |||||||||  |    
T  33592924 tcaagattgtcaaaatcgggattttgcttcatatcgaaagggaataacaaaattgaaaatcgtaaaattgcaatcgaaatcgaatga-tttactcaacta 33593022  T
Q  270 cttttgtag 278  Q
    |||||||||    
T  33593023 cttttgtag 33593031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 266
Target Start/End: Complemental strand, 23898165 - 23898070
Alignment:
Q  171 caagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaa 266  Q
    |||| ||||||||||||||| ||| ||||  | |||| | ||| ||||||||    | ||||||||||| || |||||||||||||||||||||||    
T  23898165 caagattgtcaaaatcgggattttgcttcaggtcgaatgagaagagcaaaatcgacaatcgtaaaatcgaaaccaaaatcgaaggattttactcaa 23898070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 252
Target Start/End: Complemental strand, 27890621 - 27890582
Alignment:
Q  213 atagcaaaattagtactcgtaaaatcgcaatcaaaatcga 252  Q
    |||||||||| || ||||||||||||||||||||||||||    
T  27890621 atagcaaaatcaggactcgtaaaatcgcaatcaaaatcga 27890582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 278
Target Start/End: Original strand, 33583445 - 33583547
Alignment:
Q  176 ttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagt-actcgtaaaatcgcaatcaaaatcgaaggattttactcaagaactttt 274  Q
    ||||||||||||||| ||||||||  | ||||||||  |||||| | | || | ||||||||||  ||||||||||||| ||||||||| ||| ||||||    
T  33583445 ttgtcaaaatcgggattttacttccggtcgaaaggggttagcaataatcgtaaatcgtaaaatcaaaatcaaaatcgaa-gattttacttaaggactttt 33583543  T
Q  275 gtag 278  Q
    ||||    
T  33583544 gtag 33583547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 278
Target Start/End: Original strand, 4841665 - 4841710
Alignment:
Q  233 aaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    |||||| ||||||||||| |||||||||||||||  ||||||||||    
T  4841665 aaaatcacaatcaaaatcaaaggattttactcaactacttttgtag 4841710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 277
Target Start/End: Original strand, 30912185 - 30912286
Alignment:
Q  176 ttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttg 275  Q
    ||||||||||||| | ||| ||||  |  ||||| ||||||||||||   || |||||||||| ||| |||||| ||||||||||| ||||  |||||||    
T  30912185 ttgtcaaaatcggaattttgcttcaggttgaaagagaatagcaaaatcgataatcgtaaaatctcaaccaaaattgaaggattttattcaactacttttg 30912284  T
Q  276 ta 277  Q
    ||    
T  30912285 ta 30912286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 436
Target Start/End: Original strand, 6823297 - 6823337
Alignment:
Q  396 gcttatccaacaagaggaaaccacaactcaaggtttaacca 436  Q
    ||||||||||||||| | ||||||||||||||||| |||||    
T  6823297 gcttatccaacaagaagcaaccacaactcaaggttgaacca 6823337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 169 - 278
Target Start/End: Complemental strand, 55476345 - 55476236
Alignment:
Q  169 atcaagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaaga 268  Q
    |||||| || ||||||||||||||||||||| || ||||||||| ||  |||||  |||||||||||||||||||||||||||||||||||||||||||     
T  55476345 atcaaggttatcaaaatcgggactttacttcaagtcgaaagggagtaataaaatcggtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagg 55476246  T
Q  269 acttttgtag 278  Q
    ||||||||||    
T  55476245 acttttgtag 55476236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 170 - 278
Target Start/End: Complemental strand, 9770468 - 9770360
Alignment:
Q  170 tcaagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaa 269  Q
    ||||| |||||||||||||||||||||||   | |||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||      
T  9770468 tcaaggttgtcaaaatcgggactttactttaggtcgaaagggaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttactcaaggt 9770369  T
Q  270 cttttgtag 278  Q
    |||||||||    
T  9770368 cttttgtag 9770360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 176 - 278
Target Start/End: Original strand, 23064740 - 23064842
Alignment:
Q  176 ttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttg 275  Q
    ||||||||||||||||||||||||  | |||||||||||| | ||||  | ||||||||||||||||||||||| ||||||||||| ||||| |||||||    
T  23064740 ttgtcaaaatcgggactttacttcaggtcgaaagggaataacgaaatcggaactcgtaaaatcgcaatcaaaattgaaggattttattcaaggacttttg 23064839  T
Q  276 tag 278  Q
    |||    
T  23064840 tag 23064842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 176 - 278
Target Start/End: Complemental strand, 36121173 - 36121071
Alignment:
Q  176 ttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttg 275  Q
    |||||||||||||| ||||||||| ||  |||||||||||||  |||  | ||||||||||||| ||||||||||||| ||||||||||||| |||||||    
T  36121173 ttgtcaaaatcgggtctttacttcaagttgaaagggaatagcttaatcgggactcgtaaaatcggaatcaaaatcgaaagattttactcaaggacttttg 36121074  T
Q  276 tag 278  Q
    |||    
T  36121073 tag 36121071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 177 - 278
Target Start/End: Original strand, 9911191 - 9911292
Alignment:
Q  177 tgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgt 276  Q
    |||||||||  ||||||||||||    ||||||||||||| |||||  | ||||||||||||||||| |||| ||||||||||||||| |||||||||||    
T  9911191 tgtcaaaattaggactttacttcatatcgaaagggaatagtaaaatcgggactcgtaaaatcgcaataaaaaacgaaggattttactcgagaacttttgt 9911290  T
Q  277 ag 278  Q
    ||    
T  9911291 ag 9911292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 171 - 278
Target Start/End: Complemental strand, 5376020 - 5375913
Alignment:
Q  171 caagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaac 270  Q
    |||| |||||||||| |||||||||||||  | | |||   ||||| |||||  | ||||||||||||||||||||||||||||||||||||||||| ||    
T  5376020 caaggttgtcaaaattgggactttacttcaggtcaaaaataaatagtaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttactcaaggac 5375921  T
Q  271 ttttgtag 278  Q
    || |||||    
T  5375920 ttctgtag 5375913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 207 - 266
Target Start/End: Original strand, 8010946 - 8011005
Alignment:
Q  207 aagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaa 266  Q
    ||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||    
T  8010946 aagggaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttactcaa 8011005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 188 - 274
Target Start/End: Original strand, 13551463 - 13551549
Alignment:
Q  188 ggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaactttt 274  Q
    ||||||||||||  | ||||| ||||||||||||| |  ||||||||||||||||| |||||||||||||||||||| || ||||||    
T  13551463 ggactttacttctggtcgaaaaggaatagcaaaatcaagactcgtaaaatcgcaattaaaatcgaaggattttactcgaggactttt 13551549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 171 - 278
Target Start/End: Original strand, 6346729 - 6346836
Alignment:
Q  171 caagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaac 270  Q
    |||| ||||||||||||| | ||| ||||  | |||||||||| ||||||||    | |||||||||| |||||||||||||||||||||||||||  ||    
T  6346729 caaggttgtcaaaatcggaaatttgcttcaggtcgaaagggaagagcaaaatcgaaaatcgtaaaatcacaatcaaaatcgaaggattttactcaactac 6346828  T
Q  271 ttttgtag 278  Q
    ||||||||    
T  6346829 ttttgtag 6346836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 171 - 266
Target Start/End: Complemental strand, 7045299 - 7045204
Alignment:
Q  171 caagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaa 266  Q
    |||| |||||||||| || | ||||||||  | |||||||||| |||||||| |  | || |||||||||||||||||||||||||||||||||||    
T  7045299 caaggttgtcaaaataggaattttacttcaggtcgaaagggaagagcaaaatcaaaaatcataaaatcgcaatcaaaatcgaaggattttactcaa 7045204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 391 - 440
Target Start/End: Complemental strand, 11814981 - 11814932
Alignment:
Q  391 caaatgcttatccaacaagaggaaaccacaactcaaggtttaaccacttg 440  Q
    |||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  11814981 caaatgcttatccaaccagaggaaaccacaactcaaggtttaaccgcttg 11814932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 229 - 278
Target Start/End: Complemental strand, 37240536 - 37240487
Alignment:
Q  229 tcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  37240536 tcgtaaaatcgcaatcaaaatcgaaggattttactcaactacttttgtag 37240487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 181 - 277
Target Start/End: Complemental strand, 13023903 - 13023807
Alignment:
Q  181 aaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgta 277  Q
    ||||| ||||||||||||| || |||||| ||||||||||||  | |||||||||||| ||||||| || ||| |||||||| |||| | |||||||    
T  13023903 aaaattgggactttacttcaagtcgaaagagaatagcaaaatcggaactcgtaaaatcacaatcaagatagaatgattttacccaaggaattttgta 13023807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 391 - 429
Target Start/End: Complemental strand, 5444557 - 5444519
Alignment:
Q  391 caaatgcttatccaacaagaggaaaccacaactcaaggt 429  Q
    |||||||||||||||||||||||||||||||||||||||    
T  5444557 caaatgcttatccaacaagaggaaaccacaactcaaggt 5444519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 227 - 273
Target Start/End: Complemental strand, 8367501 - 8367455
Alignment:
Q  227 actcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttt 273  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||    
T  8367501 actcgtaaaattgcaatcaaaatcgaaggattttactcaaggacttt 8367455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 213 - 266
Target Start/End: Complemental strand, 10143213 - 10143160
Alignment:
Q  213 atagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaa 266  Q
    ||||||||||||  | ||||||||||||||||||||||||||||||||| ||||    
T  10143213 atagcaaaattaacaatcgtaaaatcgcaatcaaaatcgaaggattttattcaa 10143160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 229 - 278
Target Start/End: Complemental strand, 10394907 - 10394858
Alignment:
Q  229 tcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    |||||||||||||||||||||||||||| |||||||||  ||||||||||    
T  10394907 tcgtaaaatcgcaatcaaaatcgaaggactttactcaactacttttgtag 10394858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 204 - 278
Target Start/End: Original strand, 5943066 - 5943140
Alignment:
Q  204 cgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    |||||||||| |||||||| |  | ||||||||||||||  ||||| ||||||||||||||||  ||||||||||    
T  5943066 cgaaagggaagagcaaaatcaaaaatcgtaaaatcgcaagtaaaattgaaggattttactcaactacttttgtag 5943140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 170 - 278
Target Start/End: Complemental strand, 4157386 - 4157275
Alignment:
Q  170 tcaagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactc---gtaaaatcgcaatcaaaatcgaaggattttactcaa 266  Q
    |||||||| |||||||||||| ||| |||  || |||||||||| ||||||||    | ||   |||||||||||||||| |||||| ||||||||||||    
T  4157386 tcaagtttatcaaaatcgggattttgctttaagtcgaaagggaagagcaaaatcgaaaatcattgtaaaatcgcaatcaagatcgaaagattttactcaa 4157287  T
Q  267 gaacttttgtag 278  Q
      ||||||||||    
T  4157286 ctacttttgtag 4157275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 170 - 278
Target Start/End: Complemental strand, 4157673 - 4157562
Alignment:
Q  170 tcaagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactc---gtaaaatcgcaatcaaaatcgaaggattttactcaa 266  Q
    |||||||| |||||||||||| ||| |||  || |||||||||| ||||||||    | ||   |||||||||||||||| |||||| ||||||||||||    
T  4157673 tcaagtttatcaaaatcgggattttgctttaagtcgaaagggaagagcaaaatcgaaaatcattgtaaaatcgcaatcaagatcgaaagattttactcaa 4157574  T
Q  267 gaacttttgtag 278  Q
      ||||||||||    
T  4157573 ctacttttgtag 4157562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 229 - 278
Target Start/End: Complemental strand, 7452802 - 7452754
Alignment:
Q  229 tcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    |||||||||||||||||||||||||||| |||||||||  ||||||||||    
T  7452802 tcgtaaaatcgcaatcaaaatcgaagga-tttactcaactacttttgtag 7452754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 275
Target Start/End: Complemental strand, 7045057 - 7045014
Alignment:
Q  232 taaaatcgcaatcaaaatcgaaggattttactcaagaacttttg 275  Q
    |||||||||||||||||||||| ||||||||||||  |||||||    
T  7045057 taaaatcgcaatcaaaatcgaatgattttactcaactacttttg 7045014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 8889512 - 8889465
Alignment:
Q  231 gtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    |||||||||||| |||||||||||||| ||||||||  ||||||||||    
T  8889512 gtaaaatcgcaaccaaaatcgaaggatcttactcaactacttttgtag 8889465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 263
Target Start/End: Complemental strand, 4157084 - 4157050
Alignment:
Q  229 tcgtaaaatcgcaatcaaaatcgaaggattttact 263  Q
    |||||||||||||||||||||||| ||||||||||    
T  4157084 tcgtaaaatcgcaatcaaaatcgatggattttact 4157050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 278
Target Start/End: Original strand, 5361797 - 5361846
Alignment:
Q  229 tcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    ||||||||| |||| |||||||||||| ||||||||||  ||||||||||    
T  5361797 tcgtaaaattgcaaacaaaatcgaagggttttactcaactacttttgtag 5361846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 252
Target Start/End: Complemental strand, 8409863 - 8409790
Alignment:
Q  179 tcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcga 252  Q
    ||||||||||||||||||||| ||  |||||||| ||||||||||   | |  |||||||| ||||||||||||    
T  8409863 tcaaaatcgggactttacttcaagttgaaagggagtagcaaaattgagatttataaaatcgtaatcaaaatcga 8409790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 9e-31; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 182 - 278
Target Start/End: Original strand, 27523881 - 27523977
Alignment:
Q  182 aaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    |||||||||||||||||| || ||||||||| |||||||||  | ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  27523881 aaatcgggactttacttcaagtcgaaagggagtagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtag 27523977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 171 - 278
Target Start/End: Original strand, 19262090 - 19262197
Alignment:
Q  171 caagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaac 270  Q
    |||| ||||| ||||||| |||||||||| || |||| ||||||||||||||  | ||||||||||||||||||||||||||| ||||||||||||| ||    
T  19262090 caaggttgtcgaaatcggaactttacttcaagtcgaatgggaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaagattttactcaaggac 19262189  T
Q  271 ttttgtag 278  Q
    ||||||||    
T  19262190 ttttgtag 19262197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 179 - 278
Target Start/End: Original strand, 20034004 - 20034103
Alignment:
Q  179 tcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    ||||||||||||||||||||| || ||||||||| |||||||||    ||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  20034004 tcaaaatcgggactttacttcaagtcgaaagggagtagcaaaatcgagactcgtaaaatcgcaatcaaaattgaaggattttactcaaggacttttgtag 20034103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 176 - 278
Target Start/End: Complemental strand, 1405133 - 1405031
Alignment:
Q  176 ttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttg 275  Q
    |||||||||||| ||||||| ||   | | |||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1405133 ttgtcaaaatcgagactttaatttaggtcaaaagggaatagcaaaatcggtactcataaaatcgcaatcaaaatcgaaggattttactcaagaacttttg 1405034  T
Q  276 tag 278  Q
    |||    
T  1405033 tag 1405031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 179 - 278
Target Start/End: Complemental strand, 974686 - 974586
Alignment:
Q  179 tcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagta-ctcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgta 277  Q
    |||| |||||||||||||||| || ||||||||| |||||||||  | | |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  974686 tcaatatcgggactttacttcaagtcgaaagggagtagcaaaatcggaaactcgtaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgta 974587  T
Q  278 g 278  Q
    |    
T  974586 g 974586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 171 - 278
Target Start/End: Complemental strand, 20064078 - 20063971
Alignment:
Q  171 caagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaac 270  Q
    |||| |||||||||||||| |||||||||  |  ||||||||||||||||||    |||||||||||||||||||||||||||| |||||||||||| ||    
T  20064078 caaggttgtcaaaatcggggctttacttcaggttgaaagggaatagcaaaatcgagactcgtaaaatcgcaatcaaaatcgaagaattttactcaaggac 20063979  T
Q  271 ttttgtag 278  Q
    ||||||||    
T  20063978 ttttgtag 20063971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 178 - 278
Target Start/End: Original strand, 21869102 - 21869202
Alignment:
Q  178 gtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgta 277  Q
    |||||||||||||||||||||| || ||||||||||||| |||||  | |||| |||||||||||| ||||||||||||||||| ||||  |||||||||    
T  21869102 gtcaaaatcgggactttacttcaagtcgaaagggaatagaaaaatcgggactcttaaaatcgcaattaaaatcgaaggattttattcaatgacttttgta 21869201  T
Q  278 g 278  Q
    |    
T  21869202 g 21869202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 179 - 278
Target Start/End: Complemental strand, 7302129 - 7302030
Alignment:
Q  179 tcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    ||||||||||||||||||||| ||  ||| |||  |||||||||  | ||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  7302129 tcaaaatcgggactttacttcaagttgaaggggggtagcaaaatcgggactcgtaaaattgcaatcaaaatcgaaggattttactcaaggacttttgtag 7302030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 171 - 277
Target Start/End: Original strand, 31237750 - 31237856
Alignment:
Q  171 caagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaac 270  Q
    |||| ||||||||||| ||||||||||||    | ||||||||||| |||||  | |||||||||||||||||||| |||||||||||||||||||| ||    
T  31237750 caagattgtcaaaatcaggactttacttcagttcaaaagggaatagtaaaatcgggactcgtaaaatcgcaatcaatatcgaaggattttactcaaggac 31237849  T
Q  271 ttttgta 277  Q
    |||||||    
T  31237850 ttttgta 31237856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 171 - 278
Target Start/End: Complemental strand, 19245944 - 19245837
Alignment:
Q  171 caagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaac 270  Q
    |||| ||||||||||||||| ||| |||| ||  |||||||||||||||||| |  | |||||||||||||||||||||| |||||||||||| ||  ||    
T  19245944 caaggttgtcaaaatcgggattttgcttcaagttgaaagggaatagcaaaatcaaaaatcgtaaaatcgcaatcaaaatctaaggattttacttaactac 19245845  T
Q  271 ttttgtag 278  Q
    ||||||||    
T  19245844 ttttgtag 19245837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 391 - 444
Target Start/End: Complemental strand, 24039324 - 24039271
Alignment:
Q  391 caaatgcttatccaacaagaggaaaccacaactcaaggtttaaccacttggagg 444  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  24039324 caaatgcttatccaacaagaggaaaccacaactcaaggtgtaaccacttggagg 24039271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 391 - 444
Target Start/End: Original strand, 31269734 - 31269787
Alignment:
Q  391 caaatgcttatccaacaagaggaaaccacaactcaaggtttaaccacttggagg 444  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31269734 caaatgcttatccaacaagaggaaaccacaactcaaggtgtaaccacttggagg 31269787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 176 - 274
Target Start/End: Complemental strand, 30433165 - 30433067
Alignment:
Q  176 ttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaactttt 274  Q
    |||||||||||||||| |||||||  | ||||| | ||||| |||||  | |||| |||||||||||||||||||||| ||||||||||||| ||||||    
T  30433165 ttgtcaaaatcgggacattacttcaggtcgaaaagcaatagaaaaatcgggactcataaaatcgcaatcaaaatcgaatgattttactcaaggactttt 30433067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 176 - 278
Target Start/End: Original strand, 25538924 - 25539026
Alignment:
Q  176 ttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttg 275  Q
    ||||||||||||| ||||||| ||  | ||||||||||||| |||||  |  ||||||||||||||||||||||  |||||||||||| ||  |||||||    
T  25538924 ttgtcaaaatcggtactttacatcaggtcgaaagggaatagaaaaatcgggtctcgtaaaatcgcaatcaaaattaaaggattttactgaactacttttg 25539023  T
Q  276 tag 278  Q
    |||    
T  25539024 tag 25539026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 205 - 278
Target Start/End: Complemental strand, 34578210 - 34578137
Alignment:
Q  205 gaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    |||||||| |||||||||  | |||| |||||||||||||||||| ||||||||||||||| | ||||||||||    
T  34578210 gaaagggagtagcaaaatcgggactcataaaatcgcaatcaaaattgaaggattttactcatggacttttgtag 34578137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 218 - 278
Target Start/End: Complemental strand, 36430156 - 36430096
Alignment:
Q  218 aaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    |||||| | ||||||||||||||||||||||||||||||| |||||||| || ||||||||    
T  36430156 aaaattgggactcgtaaaatcgcaatcaaaatcgaaggatattactcaataatttttgtag 36430096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 167 - 266
Target Start/End: Complemental strand, 8428581 - 8428482
Alignment:
Q  167 gaatcaagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaa 266  Q
    |||| ||| ||||||||||||||| ||| |||   | ||||||||||||| ||||| |  | |  ||||||||||||||||||||||||||||| |||||    
T  8428581 gaattaaggttgtcaaaatcgggattttgctttaggtcgaaagggaatagaaaaatcaaaaattctaaaatcgcaatcaaaatcgaaggattttgctcaa 8428482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 266
Target Start/End: Original strand, 15588690 - 15588724
Alignment:
Q  232 taaaatcgcaatcaaaatcgaaggattttactcaa 266  Q
    ||||||||||| |||||||||||||||||||||||    
T  15588690 taaaatcgcaaccaaaatcgaaggattttactcaa 15588724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 266
Target Start/End: Complemental strand, 16767079 - 16767045
Alignment:
Q  232 taaaatcgcaatcaaaatcgaaggattttactcaa 266  Q
    |||||||||||||||||| ||||||||||||||||    
T  16767079 taaaatcgcaatcaaaattgaaggattttactcaa 16767045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 278
Target Start/End: Original strand, 27749281 - 27749390
Alignment:
Q  169 atcaagtttgtcaaaatcgggactttacttcgaga-cgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaag 267  Q
    |||||||||||||||||| | | |||||||| ||| ||||||| | ||| ||||| |  | |||||||||||||||| |||| ||| || ||||||||||    
T  27749281 atcaagtttgtcaaaatcagtattttacttc-agatcgaaaggaattagtaaaatgacaaatcgtaaaatcgcaatctaaattgaatgagtttactcaag 27749379  T
Q  268 aacttttgtag 278  Q
     | ||||||||    
T  27749380 gatttttgtag 27749390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 262
Target Start/End: Original strand, 13502570 - 13502603
Alignment:
Q  229 tcgtaaaatcgcaatcaaaatcgaaggattttac 262  Q
    |||||||||||||||||||||||| |||||||||    
T  13502570 tcgtaaaatcgcaatcaaaatcgatggattttac 13502603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 4e-30; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 171 - 278
Target Start/End: Original strand, 8592173 - 8592280
Alignment:
Q  171 caagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaac 270  Q
    |||| ||||| |||||||||||||||||| || ||||||| |||||||||||    ||||||||||||||||||||||||||||||||||||||||| ||    
T  8592173 caaggttgtcgaaatcgggactttacttcaagtcgaaaggaaatagcaaaatcgagactcgtaaaatcgcaatcaaaatcgaaggattttactcaaggac 8592272  T
Q  271 ttttgtag 278  Q
    ||||||||    
T  8592273 ttttgtag 8592280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 176 - 278
Target Start/End: Original strand, 24619976 - 24620078
Alignment:
Q  176 ttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttg 275  Q
    ||||||||||||| |||||||||| || | |||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||  |||||||    
T  24619976 ttgtcaaaatcggaactttacttcaagtcaaaagggaatagcaaaattgggacttgtaaaatcgcaatcaaaatcgaaggattttactcaaagacttttg 24620075  T
Q  276 tag 278  Q
    |||    
T  24620076 tag 24620078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 179 - 278
Target Start/End: Complemental strand, 3041570 - 3041471
Alignment:
Q  179 tcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    |||||||||||| |||||||| || ||||| ||| |||||||||  | ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3041570 tcaaaatcgggattttacttcaagtcgaaatggagtagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtag 3041471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 171 - 278
Target Start/End: Complemental strand, 28746131 - 28746024
Alignment:
Q  171 caagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaac 270  Q
    |||| |||||||||| |||||||||||||  | ||||||  |||||||||||  | |||||||||||||||||||||||||||| |||||||||||||||    
T  28746131 caaggttgtcaaaattgggactttacttcaggtcgaaagaaaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaagaattttactcaagaac 28746032  T
Q  271 ttttgtag 278  Q
    ||||||||    
T  28746031 ttttgtag 28746024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 179 - 274
Target Start/End: Complemental strand, 18014338 - 18014243
Alignment:
Q  179 tcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaactttt 274  Q
    ||||||||||||||||||||| ||   ||| ||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18014338 tcaaaatcgggactttacttcaagttaaaatggagtagcaaaattgggactcgtaaaatcgcaatcaaaatcgaaggattttactcaaggactttt 18014243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 179 - 267
Target Start/End: Original strand, 8560239 - 8560327
Alignment:
Q  179 tcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaag 267  Q
    ||||||||||||||||||||| || | ||||||| |||||||||    |||||| ||||||||||||||||||||||||||||||||||    
T  8560239 tcaaaatcgggactttacttcaagtcaaaagggagtagcaaaatcgagactcgtgaaatcgcaatcaaaatcgaaggattttactcaag 8560327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 179 - 278
Target Start/End: Complemental strand, 22971155 - 22971057
Alignment:
Q  179 tcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    ||||||| ||||||||||||| ||   ||||| | |||||||||  | ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  22971155 tcaaaattgggactttacttcaagttaaaagg-agtagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtag 22971057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 169 - 267
Target Start/End: Original strand, 20766673 - 20766771
Alignment:
Q  169 atcaagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaag 267  Q
    |||||| |||||||||||||||||||||||| |  |||||| || |||||||||    |||||||||||||||||||||||||||  ||||||||||||    
T  20766673 atcaaggttgtcaaaatcgggactttacttcaactcgaaagagagtagcaaaatcgagactcgtaaaatcgcaatcaaaatcgaaaaattttactcaag 20766771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 171 - 278
Target Start/End: Complemental strand, 29067631 - 29067525
Alignment:
Q  171 caagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaac 270  Q
    |||| ||||||||||||| ||||||||||  | |||| ||||||||||||||  | |||| ||||||| ||||| |||||||||||||||||||||| |     
T  29067631 caaggttgtcaaaatcggaactttacttcaggtcgaatgggaatagcaaaatcggaactcataaaatctcaatc-aaatcgaaggattttactcaaggat 29067533  T
Q  271 ttttgtag 278  Q
    ||||||||    
T  29067532 ttttgtag 29067525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 179 - 277
Target Start/End: Original strand, 22355848 - 22355946
Alignment:
Q  179 tcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgta 277  Q
    |||||||||| ||||||| ||  | ||||| |||||||||||||  | |||||||||||||||||||||||| || ||||||| ||||| |||||||||    
T  22355848 tcaaaatcggaactttacatcaggtcgaaatggaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcaaaagattttattcaaggacttttgta 22355946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 171 - 278
Target Start/End: Complemental strand, 41671534 - 41671427
Alignment:
Q  171 caagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaac 270  Q
    |||| ||||||||||||||| ||| ||||  | |||||| ||| ||||||||   || | |||||||||||| |||||||||||||||||||||||  ||    
T  41671534 caaggttgtcaaaatcgggattttgcttcaggtcgaaagagaagagcaaaatcgataattgtaaaatcgcaaccaaaatcgaaggattttactcaactac 41671435  T
Q  271 ttttgtag 278  Q
    ||||||||    
T  41671434 ttttgtag 41671427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 229 - 278
Target Start/End: Complemental strand, 17064604 - 17064555
Alignment:
Q  229 tcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  17064604 tcgtaaaatcgcaatcaaaatcgaaggattttactcaactacttttgtag 17064555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 176 - 266
Target Start/End: Complemental strand, 39428257 - 39428163
Alignment:
Q  176 ttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatca----aaatcgaaggattttactcaa 266  Q
    |||||||||||||||||||||||   |  ||||||||||||||||||  | |||| ||||||||||||||    |||||||||||||||||||||    
T  39428257 ttgtcaaaatcgggactttacttgcggttgaaagggaatagcaaaatcgggactcataaaatcgcaatcaaaataaatcgaaggattttactcaa 39428163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 274
Target Start/End: Complemental strand, 19348900 - 19348805
Alignment:
Q  179 tcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaactttt 274  Q
    ||||||| | ||||||||||| || | ||||||| |||||||||    ||||||||||||||||||||||| ||||||||||| | ||| ||||||    
T  19348900 tcaaaattgagactttacttcaagtcaaaagggagtagcaaaatcgagactcgtaaaatcgcaatcaaaatggaaggattttattgaaggactttt 19348805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 170 - 236
Target Start/End: Original strand, 24649522 - 24649588
Alignment:
Q  170 tcaagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaa 236  Q
    ||||| |||||||||| |||||||||||||  | |||||||||||||||||||| | ||||||||||    
T  24649522 tcaaggttgtcaaaattgggactttacttcaggtcgaaagggaatagcaaaattgggactcgtaaaa 24649588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 171 - 277
Target Start/End: Complemental strand, 27090797 - 27090691
Alignment:
Q  171 caagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaac 270  Q
    |||| ||||| |||||| || |||||||   | ||||||||||||| ||||||   | |||||| |||||||| ||||||||||||||||||||||| |     
T  27090797 caaggttgtcgaaatcgagattttactttaggtcgaaagggaatagaaaaattgcaaatcgtaagatcgcaataaaaatcgaaggattttactcaaggaa 27090698  T
Q  271 ttttgta 277  Q
    |||||||    
T  27090697 ttttgta 27090691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 179 - 252
Target Start/End: Complemental strand, 9169942 - 9169869
Alignment:
Q  179 tcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcga 252  Q
    |||||||||| |||||||||| || ||||||| | |||||||||| | || |||||||| ||||||||||||||    
T  9169942 tcaaaatcggaactttacttcaagtcgaaaggaagtagcaaaattgggacccgtaaaattgcaatcaaaatcga 9169869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 176 - 277
Target Start/End: Complemental strand, 27676786 - 27676685
Alignment:
Q  176 ttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttg 275  Q
    |||| |||||| ||| ||| |||| || |||||||||| ||||||||    | || |||||||||||||||||||||| ||||||||||||  |||||||    
T  27676786 ttgttaaaatcaggattttgcttcaagtcgaaagggaagagcaaaatcgaaaatcttaaaatcgcaatcaaaatcgaaagattttactcaactacttttg 27676687  T
Q  276 ta 277  Q
    ||    
T  27676686 ta 27676685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 229 - 277
Target Start/End: Complemental strand, 28136059 - 28136011
Alignment:
Q  229 tcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgta 277  Q
    |||||||||||| |||||||||||||||||||||||||  |||||||||    
T  28136059 tcgtaaaatcgctatcaaaatcgaaggattttactcaactacttttgta 28136011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 227 - 278
Target Start/End: Complemental strand, 13286243 - 13286192
Alignment:
Q  227 actcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    |||||||||||||||||||||||| || ||||||||||||  ||||||||||    
T  13286243 actcgtaaaatcgcaatcaaaatcaaaagattttactcaactacttttgtag 13286192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 227 - 278
Target Start/End: Complemental strand, 20756321 - 20756270
Alignment:
Q  227 actcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    ||||||||||||||||||||||| ||| ||||||||||||| | ||||||||    
T  20756321 actcgtaaaatcgcaatcaaaattgaaagattttactcaaggatttttgtag 20756270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 204 - 262
Target Start/End: Complemental strand, 13006147 - 13006089
Alignment:
Q  204 cgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttac 262  Q
    ||||||||||||||||||||   | ||||||||||||||||||||| ||| ||||||||    
T  13006147 cgaaagggaatagcaaaattgaaaatcgtaaaatcgcaatcaaaattgaatgattttac 13006089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 278
Target Start/End: Original strand, 21553672 - 21553773
Alignment:
Q  176 ttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaagg-attttactcaagaactttt 274  Q
    |||| ||||||||||||||||||| |  ||||||||| ||| |||||  | ||| ||  |||||||||||||||||||||  ||||| ||||| ||||||    
T  21553672 ttgtaaaaatcgggactttacttcaaatcgaaagggagtagaaaaatcgggactggt--aatcgcaatcaaaatcgaaggttttttattcaaggactttt 21553769  T
Q  275 gtag 278  Q
    ||||    
T  21553770 gtag 21553773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 266
Target Start/End: Original strand, 6136379 - 6136438
Alignment:
Q  207 aagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaa 266  Q
    ||||||| |||||||| |  | |||||||||||||||||||||| || ||||||||||||    
T  6136379 aagggaaaagcaaaatcaaaaatcgtaaaatcgcaatcaaaatcaaaagattttactcaa 6136438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 434
Target Start/End: Complemental strand, 10745452 - 10745417
Alignment:
Q  399 tatccaacaagaggaaaccacaactcaaggtttaac 434  Q
    |||||||||||||||||| |||||||||||||||||    
T  10745452 tatccaacaagaggaaactacaactcaaggtttaac 10745417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 263
Target Start/End: Original strand, 10872494 - 10872581
Alignment:
Q  176 ttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttact 263  Q
    ||||||||||| ||| ||||||||  | | |||||||| || ||||| |  | || |||||||||||||||||| |||||||||||||    
T  10872494 ttgtcaaaatcaggattttacttcaggtcaaaagggaagagaaaaatcaaaaatcataaaatcgcaatcaaaattgaaggattttact 10872581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 278
Target Start/End: Complemental strand, 17796887 - 17796813
Alignment:
Q  204 cgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    |||||||||| || ||||| |  | ||||||||| ||||| |||||||||| |||||||||||  ||||||||||    
T  17796887 cgaaagggaaaagaaaaataaaaaatcgtaaaattgcaattaaaatcgaagcattttactcaactacttttgtag 17796813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 278
Target Start/End: Complemental strand, 19105327 - 19105253
Alignment:
Q  204 cgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    |||||||||| || ||||| |  | ||||||||| ||||| |||||||||| |||||||||||  ||||||||||    
T  19105327 cgaaagggaaaagaaaaataaaaaatcgtaaaattgcaattaaaatcgaagcattttactcaactacttttgtag 19105253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 278
Target Start/End: Original strand, 3449142 - 3449191
Alignment:
Q  229 tcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    |||||||||||||| |||||||||| ||||||| ||||  ||||||||||    
T  3449142 tcgtaaaatcgcaaccaaaatcgaatgattttattcaactacttttgtag 3449191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 436
Target Start/End: Complemental strand, 4607298 - 4607257
Alignment:
Q  395 tgcttatccaacaagaggaaaccacaactcaaggtttaacca 436  Q
    |||||||||||||||| | ||||||||||||||||| |||||    
T  4607298 tgcttatccaacaagaagcaaccacaactcaaggttgaacca 4607257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 266
Target Start/End: Original strand, 25870154 - 25870191
Alignment:
Q  229 tcgtaaaatcgcaatcaaaatcgaaggattttactcaa 266  Q
    |||||||||||||| ||||||| |||||||||||||||    
T  25870154 tcgtaaaatcgcaaccaaaatcaaaggattttactcaa 25870191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 4e-30; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 171 - 278
Target Start/End: Complemental strand, 13100545 - 13100438
Alignment:
Q  171 caagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaac 270  Q
    |||| |||||||||||||||||||||||| || ||||||||||| |||||||  | |||||||||||||||||||||||| |||||||||||||||| ||    
T  13100545 caaggttgtcaaaatcgggactttacttcaagtcgaaagggaatggcaaaatcggaactcgtaaaatcgcaatcaaaatcaaaggattttactcaaggac 13100446  T
Q  271 ttttgtag 278  Q
     |||||||    
T  13100445 atttgtag 13100438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 176 - 278
Target Start/End: Original strand, 14074262 - 14074364
Alignment:
Q  176 ttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttg 275  Q
    ||||||||||| ||||||||||||  | |||||||||||||||||||| | |||| ||||||| |||||||||||||||||||||||||||| |||||||    
T  14074262 ttgtcaaaatcaggactttacttcaggtcgaaagggaatagcaaaattggaactcataaaatcacaatcaaaatcgaaggattttactcaaggacttttg 14074361  T
Q  276 tag 278  Q
    |||    
T  14074362 tag 14074364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 179 - 278
Target Start/End: Original strand, 17197311 - 17197410
Alignment:
Q  179 tcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    ||||||||||||||||||||| || ||||||||| |||||||||  | ||||||||||||||||  ||||||||||||||||||||||| ||||||||||    
T  17197311 tcaaaatcgggactttacttcaagtcgaaagggagtagcaaaatcggaactcgtaaaatcgcaactaaaatcgaaggattttactcaaggacttttgtag 17197410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 176 - 278
Target Start/End: Original strand, 16125234 - 16125336
Alignment:
Q  176 ttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttg 275  Q
    |||| |||||||| ||||||||||  | ||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||| || ||||    
T  16125234 ttgttaaaatcggaactttacttcaggtcgaaagggaatagtaaaattgggactcgtaaaatcgcaatcaaaatcgaaggattttactcaaggacatttg 16125333  T
Q  276 tag 278  Q
    |||    
T  16125334 tag 16125336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 176 - 278
Target Start/End: Original strand, 21846053 - 21846155
Alignment:
Q  176 ttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttg 275  Q
    ||||||||||| |||||||||| |  | |||||||||||||||||||  | |||| |||||||||||||||||||||||||||||||||||| |||||||    
T  21846053 ttgtcaaaatcaggactttactccaggtcgaaagggaatagcaaaatcgggactcttaaaatcgcaatcaaaatcgaaggattttactcaaggacttttg 21846152  T
Q  276 tag 278  Q
    |||    
T  21846153 tag 21846155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 204 - 277
Target Start/End: Original strand, 19009755 - 19009828
Alignment:
Q  204 cgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgta 277  Q
    |||||||||||||||||||  | |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  19009755 cgaaagggaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcaaaggattttactcaagaacttttgta 19009828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 171 - 267
Target Start/End: Original strand, 25146542 - 25146638
Alignment:
Q  171 caagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaag 267  Q
    |||| ||||||||||| ||||||||||||  |  ||||||||||||||||||  | | |||||||||||||||||||||||||||||||||||||||    
T  25146542 caaggttgtcaaaatcaggactttacttcaggttgaaagggaatagcaaaatcggaaatcgtaaaatcgcaatcaaaatcgaaggattttactcaag 25146638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 168 - 278
Target Start/End: Original strand, 17055691 - 17055800
Alignment:
Q  168 aatcaagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaag 267  Q
    ||||||| |||||||||||||| |||||||| | | |||||||| || | |||||  | ||||||||||||||||||||||||||||||||||||||||     
T  17055691 aatcaaggttgtcaaaatcgggtctttacttag-gtcgaaaggggattgtaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttactcaac 17055789  T
Q  268 aacttttgtag 278  Q
     ||||||||||    
T  17055790 tacttttgtag 17055800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 169 - 278
Target Start/End: Original strand, 9351835 - 9351944
Alignment:
Q  169 atcaagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaaga 268  Q
    |||||| |||||||||||  |||||||||||  | |||||| ||||||||||||  | ||||||||||||||||||||||||| |||||||||  ||||     
T  9351835 atcaaggttgtcaaaatcaagactttacttcaggtcgaaagcgaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcgtaggattttatccaagg 9351934  T
Q  269 acttttgtag 278  Q
    ||||||||||    
T  9351935 acttttgtag 9351944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 180 - 262
Target Start/End: Original strand, 9954816 - 9954898
Alignment:
Q  180 caaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttac 262  Q
    ||||||||| |||||||||   | |||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||    
T  9954816 caaaatcggaactttacttaaggtcgaaagggaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttac 9954898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 171 - 274
Target Start/End: Original strand, 17869524 - 17869627
Alignment:
Q  171 caagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaac 270  Q
    |||| ||||||||||||||||| || |||  | | |||||||| ||||||||  | || ||||||||||||||||||||| |||||||||||||||| ||    
T  17869524 caagattgtcaaaatcgggactctaattcaggtcaaaagggaagagcaaaatcgggacacgtaaaatcgcaatcaaaatcaaaggattttactcaaggac 17869623  T
Q  271 tttt 274  Q
    ||||    
T  17869624 tttt 17869627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 227 - 278
Target Start/End: Complemental strand, 23528955 - 23528904
Alignment:
Q  227 actcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  23528955 actcgtaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtag 23528904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 169 - 278
Target Start/End: Original strand, 42179843 - 42179952
Alignment:
Q  169 atcaagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaaga 268  Q
    |||||| ||||||||||| | | ||||||||| |   ||||||||||||| |||    ||||||||||||||||||||||||||||||||||| || ||     
T  42179843 atcaaggttgtcaaaatcagaaatttacttcgggttaaaagggaatagcataatcgaaactcgtaaaatcgcaatcaaaatcgaaggattttattcgagg 42179942  T
Q  269 acttttgtag 278  Q
    ||||||||||    
T  42179943 acttttgtag 42179952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 172 - 278
Target Start/End: Original strand, 9128612 - 9128719
Alignment:
Q  172 aagtttgtcaaaatcgggactttacttcgag-acgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaac 270  Q
    |||||| |||||||||||| ||||| || || |  |||||||||||||||||  | |||||||||||| | |||||||||||||||||||||| ||| |     
T  9128612 aagtttatcaaaatcgggattttacctcaagtaaaaaagggaatagcaaaatcgggactcgtaaaatcacgatcaaaatcgaaggattttactaaaggat 9128711  T
Q  271 ttttgtag 278  Q
    ||||||||    
T  9128712 ttttgtag 9128719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 176 - 278
Target Start/End: Original strand, 12002640 - 12002740
Alignment:
Q  176 ttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttg 275  Q
    |||||||||||||||||||| ||  || ||||||||| |||||||||| | ||||  |||||| |||| |||||||||||||||||||||   |||||||    
T  12002640 ttgtcaaaatcgggactttaatttaagtcgaaagggagtagcaaaattgggactc--aaaatcacaataaaaatcgaaggattttactcatagacttttg 12002737  T
Q  276 tag 278  Q
    |||    
T  12002738 tag 12002740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 178 - 278
Target Start/End: Complemental strand, 8773613 - 8773516
Alignment:
Q  178 gtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgta 277  Q
    |||||||||| ||||||||||  || ||||||||||||||| ||| |   |||||||||||||||| ||||| ||||||||||||| ||| | |||||||    
T  8773613 gtcaaaatcgagactttacttaaagtcgaaagggaatagcagaatga---ctcgtaaaatcgcaattaaaattgaaggattttacttaaggatttttgta 8773517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 170 - 272
Target Start/End: Original strand, 27502128 - 27502230
Alignment:
Q  170 tcaagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaa 269  Q
    ||||| ||||||||||||||| |||||||| || | | |  |||||||||||     |||| |||||| |||||||||||||||||||||||||||||||    
T  27502128 tcaaggttgtcaaaatcgggaatttacttcaagtcaacatagaatagcaaaaccgagactcataaaattgcaatcaaaatcgaaggattttactcaagaa 27502227  T
Q  270 ctt 272  Q
    |||    
T  27502228 ctt 27502230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 171 - 278
Target Start/End: Original strand, 18304592 - 18304692
Alignment:
Q  171 caagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaac 270  Q
    |||| |||||||||||||||||| |||||  | ||||||| || ||||||||       |||||||||||| ||||||||||||||||||||| ||| ||    
T  18304592 caaggttgtcaaaatcgggacttcacttcaggtcgaaaggaaaaagcaaaat-------cgtaaaatcgcattcaaaatcgaaggattttactaaaggac 18304684  T
Q  271 ttttgtag 278  Q
    ||||||||    
T  18304685 ttttgtag 18304692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 391 - 443
Target Start/End: Original strand, 9906092 - 9906144
Alignment:
Q  391 caaatgcttatccaacaagaggaaaccacaactcaaggtttaaccacttggag 443  Q
    ||||||| ||||||||||||||||||||||||||||||| ||| |||||||||    
T  9906092 caaatgcctatccaacaagaggaaaccacaactcaaggtgtaatcacttggag 9906144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 206 - 278
Target Start/End: Complemental strand, 16434829 - 16434757
Alignment:
Q  206 aaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    |||||||||||||||||    | ||||||||| |||||||||||||||||||||||||| | |||||||||||    
T  16434829 aaagggaatagcaaaatcgaaaatcgtaaaattgcaatcaaaatcgaaggattttactcgacaacttttgtag 16434757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 212 - 261
Target Start/End: Original strand, 9321550 - 9321599
Alignment:
Q  212 aatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggatttta 261  Q
    |||||||||||  | |||||||||||||||||||||||||||||||||||    
T  9321550 aatagcaaaatcggaactcgtaaaatcgcaatcaaaatcgaaggatttta 9321599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 171 - 250
Target Start/End: Original strand, 13276033 - 13276109
Alignment:
Q  171 caagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatc 250  Q
    |||| ||||||||||||||||||||||    | |||||| |||||||||||| || ||||||||||||||||||| ||||    
T  13276033 caagattgtcaaaatcgggactttactg---gtcgaaagagaatagcaaaatcaggactcgtaaaatcgcaatcagaatc 13276109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 395 - 440
Target Start/End: Original strand, 35267763 - 35267808
Alignment:
Q  395 tgcttatccaacaagaggaaaccacaactcaaggtttaaccacttg 440  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||    
T  35267763 tgcttatccaacaagaagaaaccacaactcaaggtttaaccgcttg 35267808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 171 - 266
Target Start/End: Original strand, 41032547 - 41032642
Alignment:
Q  171 caagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaa 266  Q
    |||| |||||||||| |||| ||||||||  |  ||||| ||| |||||||||  || ||||||||||||||  |||||||||| |||||||||||    
T  41032547 caaggttgtcaaaatagggattttacttcaggttgaaagagaagagcaaaattgataatcgtaaaatcgcaactaaaatcgaagaattttactcaa 41032642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 229 - 278
Target Start/End: Complemental strand, 47786155 - 47786106
Alignment:
Q  229 tcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    |||||||||| ||| |||||||||||||||||||||||  ||||||||||    
T  47786155 tcgtaaaatcacaaccaaaatcgaaggattttactcaactacttttgtag 47786106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 9954770 - 9954821
Alignment:
Q  171 caagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaat 222  Q
    |||| |||||||||||||||||||||||   | |||||||||||||||||||    
T  9954770 caaggttgtcaaaatcgggactttacttaaggtcgaaagggaatagcaaaat 9954821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 263
Target Start/End: Original strand, 17055999 - 17056033
Alignment:
Q  229 tcgtaaaatcgcaatcaaaatcgaaggattttact 263  Q
    |||||||||||||||||||||||| ||||||||||    
T  17055999 tcgtaaaatcgcaatcaaaatcgatggattttact 17056033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 278
Target Start/End: Complemental strand, 22789480 - 22789431
Alignment:
Q  229 tcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    |||||||||| ||||||||||| |||||||||||| | | ||||||||||    
T  22789480 tcgtaaaatcacaatcaaaatcaaaggattttactaatggacttttgtag 22789431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 278
Target Start/End: Complemental strand, 30619234 - 30619190
Alignment:
Q  234 aaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    |||||||||  ||||||||||||||||||||||  ||||||||||    
T  30619234 aaatcgcaacaaaaatcgaaggattttactcaactacttttgtag 30619190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 4e-27; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 176 - 278
Target Start/End: Complemental strand, 17811698 - 17811596
Alignment:
Q  176 ttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttg 275  Q
    ||||||||||||||||||||||||  | | |||||||||||||||||  | | ||||||||||||||||||||||||| ||||||||||||| |||||||    
T  17811698 ttgtcaaaatcgggactttacttcaggtcaaaagggaatagcaaaatcgggattcgtaaaatcgcaatcaaaatcgaaagattttactcaaggacttttg 17811599  T
Q  276 tag 278  Q
    |||    
T  17811598 tag 17811596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 179 - 278
Target Start/End: Original strand, 25842513 - 25842612
Alignment:
Q  179 tcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    ||||||| ||||||||||||| || ||||||||| |||||||||  | ||||||||||||||||||||||| | ||||||||||||| ||||||||||||    
T  25842513 tcaaaattgggactttacttcaagtcgaaagggagtagcaaaatcgggactcgtaaaatcgcaatcaaaattggaggattttactcatgaacttttgtag 25842612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 176 - 278
Target Start/End: Complemental strand, 8304436 - 8304334
Alignment:
Q  176 ttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttg 275  Q
    |||||||||||| ||||||||||| || |||||| || |||||||||    |||||||||||| |||||||||||||||||||||||||||| |||||||    
T  8304436 ttgtcaaaatcgagactttacttcaagtcgaaagagagtagcaaaatcgcgactcgtaaaatcacaatcaaaatcgaaggattttactcaaggacttttg 8304337  T
Q  276 tag 278  Q
    |||    
T  8304336 tag 8304334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 170 - 278
Target Start/End: Complemental strand, 4247712 - 4247604
Alignment:
Q  170 tcaagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaa 269  Q
    ||||| |||||||||| ||||||||||||| || ||||||||||||  |||||| | | ||||||||||||||||||| || |||||||||||||||| |    
T  4247712 tcaagattgtcaaaattgggactttacttcaagtcgaaagggaatacaaaaattgggattcgtaaaatcgcaatcaaattcaaaggattttactcaagga 4247613  T
Q  270 cttttgtag 278  Q
     ||||||||    
T  4247612 tttttgtag 4247604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 176 - 278
Target Start/End: Original strand, 24989553 - 24989654
Alignment:
Q  176 ttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttg 275  Q
    |||||||||||||||||||||||   | |||||||||||| ||||||  | ||||||||||| ||||||||||||||||||||||||| ||| |||||||    
T  24989553 ttgtcaaaatcgggactttactttaggtcgaaagggaataacaaaatcgggactcgtaaaatggcaatcaaaatcgaaggattttact-aaggacttttg 24989651  T
Q  276 tag 278  Q
    |||    
T  24989652 tag 24989654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 176 - 278
Target Start/End: Complemental strand, 5715631 - 5715533
Alignment:
Q  176 ttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttg 275  Q
    ||||||||||||||||||||||    | ||||||| ||||| |||||  | |||||||||||||||||||||||||| |||||||||||||| |||||||    
T  5715631 ttgtcaaaatcgggactttact----gtcgaaaggaaatagaaaaatcgggactcgtaaaatcgcaatcaaaatcgagggattttactcaaggacttttg 5715536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 179 - 258
Target Start/End: Original strand, 1981107 - 1981186
Alignment:
Q  179 tcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggatt 258  Q
    ||||||||||||||||||||| || ||||||||| ||| |||||| | ||||||||||||| ||||||||||||||||||    
T  1981107 tcaaaatcgggactttacttcaagtcgaaagggattagaaaaattggaactcgtaaaatcgtaatcaaaatcgaaggatt 1981186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 176 - 278
Target Start/End: Original strand, 20570664 - 20570766
Alignment:
Q  176 ttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttg 275  Q
    ||||||||||||||||| ||||||  |  ||||||||||| |||||||   |||| |||||||||||||||||| ||| ||||||||||||| |||||||    
T  20570664 ttgtcaaaatcgggactctacttcaggttgaaagggaataacaaaattgagactcataaaatcgcaatcaaaattgaaagattttactcaaggacttttg 20570763  T
Q  276 tag 278  Q
    |||    
T  20570764 tag 20570766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 176 - 276
Target Start/End: Complemental strand, 5058878 - 5058778
Alignment:
Q  176 ttgtcaaaatcgggactttacttcgaga-cgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaactttt 274  Q
    |||||||||||||||||||||||| ||| | |||||||||||||||||  | | ||||||||| ||||||||||||||||||||||| ||||| | ||||    
T  5058878 ttgtcaaaatcgggactttacttc-agatcaaaagggaatagcaaaatcggaattcgtaaaattgcaatcaaaatcgaaggattttaatcaaggaatttt 5058780  T
Q  275 gt 276  Q
    ||    
T  5058779 gt 5058778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 391 - 444
Target Start/End: Complemental strand, 7737146 - 7737093
Alignment:
Q  391 caaatgcttatccaacaagaggaaaccacaactcaaggtttaaccacttggagg 444  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7737146 caaatgcttattcaacaagaggaaaccacaactcaaggtttaaccacttggagg 7737093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 188 - 274
Target Start/End: Original strand, 9685085 - 9685171
Alignment:
Q  188 ggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaactttt 274  Q
    ||||||||||||  | ||||| ||||||||||||| |  ||||||||||||||||| |||||||||||||||||||| || ||||||    
T  9685085 ggactttacttctggtcgaaaaggaatagcaaaatcaagactcgtaaaatcgcaattaaaatcgaaggattttactcgaggactttt 9685171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 179 - 278
Target Start/End: Original strand, 23618211 - 23618310
Alignment:
Q  179 tcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    ||||||||  ||||||||||  ||  |||||||| |||||||||  | ||||  |||||||||||||||||||||| |||||||||||| ||||||||||    
T  23618211 tcaaaatcaagactttactttaagttgaaagggagtagcaaaatcgggactccgaaaatcgcaatcaaaatcgaagaattttactcaaggacttttgtag 23618310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 176 - 278
Target Start/End: Original strand, 44944624 - 44944726
Alignment:
Q  176 ttgtcaaaatcgggactttacttcgaga-cgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaactttt 274  Q
    |||||||||||||||||||||||| ||| ||||||| |||||||||    | ||||||||||||||||| |||||||||  |||||||| ||| ||||||    
T  44944624 ttgtcaaaatcgggactttacttc-agatcgaaaggaaatagcaaatgcgggactcgtaaaatcgcaattaaaatcgaacaattttacttaaggactttt 44944722  T
Q  275 gtag 278  Q
    ||||    
T  44944723 gtag 44944726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 170 - 276
Target Start/End: Complemental strand, 11326639 - 11326533
Alignment:
Q  170 tcaagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaa 269  Q
    ||||| ||||||||||| | |||||| |||  |  ||||| ||||||||||||| | |||| ||||||| |||||||||| |||| |||||||||||| |    
T  11326639 tcaaggttgtcaaaatcagaactttatttcaggtggaaagagaatagcaaaattgggactcttaaaatcacaatcaaaattgaagtattttactcaagga 11326540  T
Q  270 cttttgt 276  Q
    |||||||    
T  11326539 cttttgt 11326533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 179 - 264
Target Start/End: Complemental strand, 27221762 - 27221676
Alignment:
Q  179 tcaaaatcgggactttacttcgaga-cgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactc 264  Q
    ||||||||||||||||||||  ||  |||||| | ||||||||||  | | ||||||||||||||||||||||||||||||||||||    
T  27221762 tcaaaatcgggactttacttttaggtcgaaagagtatagcaaaatcgggattcgtaaaatcgcaatcaaaatcgaaggattttactc 27221676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 391 - 444
Target Start/End: Complemental strand, 41832472 - 41832418
Alignment:
Q  391 caaatgcttatccaacaagaggaaaccacaactcaa-ggtttaaccacttggagg 444  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  41832472 caaatgcttatccaacaagaggaaaccacaactcaagggtgtaaccacttggagg 41832418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 205 - 278
Target Start/End: Original strand, 24725280 - 24725353
Alignment:
Q  205 gaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    |||||| |||||||| ||| | |||  ||||||||||||||||||| |||||||||||||||| ||||||||||    
T  24725280 gaaaggaaatagcaatattggaacttttaaaatcgcaatcaaaatcaaaggattttactcaaggacttttgtag 24725353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 229 - 266
Target Start/End: Complemental strand, 1977845 - 1977808
Alignment:
Q  229 tcgtaaaatcgcaatcaaaatcgaaggattttactcaa 266  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1977845 tcgtaaaatcgcaatcaaaatcgaaggattttactcaa 1977808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 229 - 278
Target Start/End: Original strand, 8329876 - 8329925
Alignment:
Q  229 tcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    |||||||||||||||||||||| |||||||||||||||  ||||||||||    
T  8329876 tcgtaaaatcgcaatcaaaatcaaaggattttactcaactacttttgtag 8329925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 229 - 278
Target Start/End: Original strand, 26565380 - 26565429
Alignment:
Q  229 tcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    ||||||||||| ||||||||||||||||||||||||||  ||||||||||    
T  26565380 tcgtaaaatcgtaatcaaaatcgaaggattttactcaactacttttgtag 26565429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 229 - 278
Target Start/End: Complemental strand, 39182453 - 39182404
Alignment:
Q  229 tcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    |||||||||||||| |||||||||||||||||||||||  ||||||||||    
T  39182453 tcgtaaaatcgcaaccaaaatcgaaggattttactcaactacttttgtag 39182404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 171 - 278
Target Start/End: Complemental strand, 8572491 - 8572385
Alignment:
Q  171 caagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaac 270  Q
    |||| |||||||||| |||||||||  || || ||||||||||||| || ||| | |||| |||| ||||||||||||||||| ||| ||| ||||| ||    
T  8572491 caaggttgtcaaaattgggactttatctcaagtcgaaagggaatagtaatattgggactcttaaa-tcgcaatcaaaatcgaaagatgttaatcaaggac 8572393  T
Q  271 ttttgtag 278  Q
     |||||||    
T  8572392 atttgtag 8572385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 14055552 - 14055505
Alignment:
Q  231 gtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    |||||||||||| |||||||||||||||||||||||  ||||||||||    
T  14055552 gtaaaatcgcaaccaaaatcgaaggattttactcaactacttttgtag 14055505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 14365580 - 14365533
Alignment:
Q  231 gtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    |||||||||||| |||||||||||||||||||||||  ||||||||||    
T  14365580 gtaaaatcgcaaccaaaatcgaaggattttactcaactacttttgtag 14365533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 253
Target Start/End: Original strand, 10285677 - 10285759
Alignment:
Q  171 caagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaa 253  Q
    |||| ||||||||||||||| ||||||||  | |||||| ||| || ||||| |  | |||||||||||||||||||||||||    
T  10285677 caaggttgtcaaaatcgggattttacttcaggtcgaaagagaagagaaaaatcaacaatcgtaaaatcgcaatcaaaatcgaa 10285759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 205 - 278
Target Start/End: Complemental strand, 4575051 - 4574978
Alignment:
Q  205 gaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    |||||||||||| ||||| |  | |||||||||||||||||||||| ||| ||| |||||||  ||||||||||    
T  4575051 gaaagggaatagtaaaatcaaaaatcgtaaaatcgcaatcaaaatcaaagaattctactcaactacttttgtag 4574978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 229 - 278
Target Start/End: Original strand, 8346363 - 8346412
Alignment:
Q  229 tcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    |||||| ||||||||||||||| |||||||||||||||  ||||||||||    
T  8346363 tcgtaatatcgcaatcaaaatcaaaggattttactcaactacttttgtag 8346412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 260
Target Start/End: Original strand, 26281169 - 26281251
Alignment:
Q  176 ttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggatttt 260  Q
    ||||||||||| |||||||||||   | ||||| ||||||||||| | || | ||||||||||||||||||||| ||||||||||    
T  26281169 ttgtcaaaatcaggactttactttaggtcgaaaaggaatagcaaa-tcagga-tcgtaaaatcgcaatcaaaattgaaggatttt 26281251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 436
Target Start/End: Complemental strand, 34512690 - 34512642
Alignment:
Q  388 aagcaaatgcttatccaacaagaggaaaccacaactcaaggtttaacca 436  Q
    |||||| |||||||||||||||| | ||||||||||||||||| |||||    
T  34512690 aagcaagtgcttatccaacaagaagcaaccacaactcaaggttgaacca 34512642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 278
Target Start/End: Original strand, 8329814 - 8329860
Alignment:
Q  232 taaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    |||||| ||||||||||| ||||||||||||||||  ||||||||||    
T  8329814 taaaattgcaatcaaaattgaaggattttactcaactacttttgtag 8329860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 440
Target Start/End: Original strand, 219320 - 219364
Alignment:
Q  395 tgcttatccaacaagaggaaaccacaactcaaggtttaaccacttg 440  Q
    |||||||||||||||| ||||| |||||||||||||||||| ||||    
T  219320 tgcttatccaacaagaagaaac-acaactcaaggtttaaccgcttg 219364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 278
Target Start/End: Original strand, 8343634 - 8343683
Alignment:
Q  229 tcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    ||||||||  |||||||||||||||| |||||||||||  ||||||||||    
T  8343634 tcgtaaaaatgcaatcaaaatcgaagtattttactcaactacttttgtag 8343683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 278
Target Start/End: Original strand, 21157525 - 21157574
Alignment:
Q  229 tcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    |||||||||| |||||||||| ||||||||||| ||||  ||||||||||    
T  21157525 tcgtaaaatctcaatcaaaattgaaggattttattcaactacttttgtag 21157574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 229 - 277
Target Start/End: Original strand, 7730191 - 7730239
Alignment:
Q  229 tcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgta 277  Q
    |||||||||||||| |||||||||| | ||||||||||  |||||||||    
T  7730191 tcgtaaaatcgcaaccaaaatcgaatggttttactcaactacttttgta 7730239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 8253991 - 8254039
Alignment:
Q  204 cgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcga 252  Q
    ||||||||| |||||||||    ||||||||||||||||||||||||||    
T  8253991 cgaaagggagtagcaaaatcgagactcgtaaaatcgcaatcaaaatcga 8254039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 179 - 267
Target Start/End: Complemental strand, 8788 - 8700
Alignment:
Q  179 tcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaag 267  Q
    |||||||||||||||||||||  | |||||||||||| ||||||  | ||||||||||||||||||||||| |||||||||||||||||    
T  8788 tcaaaatcgggactttacttcaggtcgaaagggaataacaaaatcggaactcgtaaaatcgcaatcaaaattgaaggattttactcaag 8700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 179 - 278
Target Start/End: Original strand, 14708 - 14807
Alignment:
Q  179 tcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    ||||||||||| ||||||||| || ||||| ||| |||||||||  | ||||||||||||||||||||||||||||||||||| ||||  ||||||||||    
T  14708 tcaaaatcggggctttacttcaagtcgaaatggagtagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttattcaaagacttttgtag 14807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 171 - 278
Target Start/End: Original strand, 38301 - 38407
Alignment:
Q  171 caagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaac 270  Q
    |||| |||||||||||||||||||||||| || ||||||| |||||||||||  | ||||||||||| |||||| | |||||||||||||||||| | ||    
T  38301 caaggttgtcaaaatcgggactttacttcaagtcgaaaggaaatagcaaaatcgggactcgtaaaattgcaatc-agatcgaaggattttactcatggac 38399  T
Q  271 ttttgtag 278  Q
    ||||||||    
T  38400 ttttgtag 38407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 171 - 278
Target Start/End: Original strand, 56199 - 56306
Alignment:
Q  171 caagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaac 270  Q
    |||| |||||||||||| |||||||||||  | |||||||||||||||||||    ||   |||||||||||||||||||||||||||||||||||| ||    
T  56199 caaggttgtcaaaatcgagactttacttcaggtcgaaagggaatagcaaaatcgagacatctaaaatcgcaatcaaaatcgaaggattttactcaaggac 56298  T
Q  271 ttttgtag 278  Q
    ||||||||    
T  56299 ttttgtag 56306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2084 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold2084
Description:

Target: scaffold2084; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 179 - 273
Target Start/End: Complemental strand, 175 - 81
Alignment:
Q  179 tcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttt 273  Q
    ||||||||||||||||||||| || | ||||||| |||||||||  | ||||||||||| | ||| ||||||||||||||||||||||| |||||    
T  175 tcaaaatcgggactttacttcaagtcaaaagggagtagcaaaatcgggactcgtaaaattgtaattaaaatcgaaggattttactcaaggacttt 81  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 169 - 278
Target Start/End: Original strand, 76081 - 76189
Alignment:
Q  169 atcaagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaaga 268  Q
    |||||| |||||||||||||||||||||||| || ||||||| |||||||||    | ||||||||||| ||||| || |||||||||||||||||||      
T  76081 atcaaggttgtcaaaatcgggactttacttccagtcgaaaggaaatagcaaacccgggactcgtaaaattgcaat-aagatcgaaggattttactcaaag 76179  T
Q  269 acttttgtag 278  Q
    ||||||||||    
T  76180 acttttgtag 76189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0526 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 168 - 267
Target Start/End: Complemental strand, 8514 - 8415
Alignment:
Q  168 aatcaagtttgtcaaaatcgggactttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaag 267  Q
    ||||||| || |||||||||||| |||||||  || ||||||||| ||| |||||| | |||| |||||| ||| |||||||||||||||||||||||||    
T  8514 aatcaaggttatcaaaatcgggagtttactttaagtcgaaagggagtagtaaaattgggactcataaaattgcagtcaaaatcgaaggattttactcaag 8415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0525 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0525
Description:

Target: scaffold0525; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 391 - 444
Target Start/End: Original strand, 2301 - 2354
Alignment:
Q  391 caaatgcttatccaacaagaggaaaccacaactcaaggtttaaccacttggagg 444  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  2301 caaatgcttatccaacaagaggaaaccacaactcaaggtgtaatcacttggagg 2354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 227 - 278
Target Start/End: Original strand, 132945 - 132996
Alignment:
Q  227 actcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  132945 actcgtaaaatcgcaatcaaaatcgaaggattttcctcaaggacttttgtag 132996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 210 - 276
Target Start/End: Original strand, 7268 - 7334
Alignment:
Q  210 ggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgt 276  Q
    |||||||||||||    ||| ||||||||| ||||||||||||||||||||||||||| ||||||||    
T  7268 ggaatagcaaaatcgagacttgtaaaatcgtaatcaaaatcgaaggattttactcaagtacttttgt 7334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0534 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0534
Description:

Target: scaffold0534; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 206 - 278
Target Start/End: Complemental strand, 990 - 918
Alignment:
Q  206 aaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    |||||||| |||||||||   | ||||||||| |||||||||||||||| |||||||||||  ||||||||||    
T  990 aaagggaagagcaaaattgaaaatcgtaaaattgcaatcaaaatcgaagaattttactcaactacttttgtag 918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 266
Target Start/End: Complemental strand, 24722 - 24646
Alignment:
Q  190 actttacttcgagacgaaagggaatagcaaaattagtactcgtaaaatcgcaatcaaaatcgaaggattttactcaa 266  Q
    |||||||||| || ||||||||| |||||||||  | ||||||||||| | |||||||||| || ||||||||||||    
T  24722 actttacttcaagtcgaaagggagtagcaaaatcgggactcgtaaaattgtaatcaaaatcaaaagattttactcaa 24646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 232 - 278
Target Start/End: Original strand, 8794 - 8840
Alignment:
Q  232 taaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    |||||||| ||||||||||||||||||||||||||  ||||||||||    
T  8794 taaaatcgtaatcaaaatcgaaggattttactcaactacttttgtag 8840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 425
Target Start/End: Complemental strand, 22757 - 22723
Alignment:
Q  391 caaatgcttatccaacaagaggaaaccacaactca 425  Q
    |||||||||||||||||||||||||||||||||||    
T  22757 caaatgcttatccaacaagaggaaaccacaactca 22723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0862 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0862
Description:

Target: scaffold0862; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 391 - 439
Target Start/End: Complemental strand, 88 - 39
Alignment:
Q  391 caaatgctta-tccaacaagaggaaaccacaactcaaggtttaaccactt 439  Q
    |||||||||| ||||||||||| ||||||||||||||||| |||||||||    
T  88 caaatgcttactccaacaagagaaaaccacaactcaaggtgtaaccactt 39  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 229 - 278
Target Start/End: Complemental strand, 145885 - 145836
Alignment:
Q  229 tcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    ||||||||| |||||||||||||||||||||||||||   ||||||||||    
T  145885 tcgtaaaatagcaatcaaaatcgaaggattttactcacttacttttgtag 145836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 33233 - 33186
Alignment:
Q  231 gtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    |||||||||||||||||||||||| ||||||||||   ||||||||||    
T  33233 gtaaaatcgcaatcaaaatcgaagaattttactcacttacttttgtag 33186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 278
Target Start/End: Original strand, 93539 - 93586
Alignment:
Q  231 gtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    ||||||||| ||||||||||||||||||||| ||||  ||||||||||    
T  93539 gtaaaatcgtaatcaaaatcgaaggattttattcaactacttttgtag 93586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 262
Target Start/End: Original strand, 93602 - 93635
Alignment:
Q  229 tcgtaaaatcgcaatcaaaatcgaaggattttac 262  Q
    |||||||||||||||||||||||| |||||||||    
T  93602 tcgtaaaatcgcaatcaaaatcgatggattttac 93635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 278
Target Start/End: Original strand, 48497 - 48543
Alignment:
Q  232 taaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    ||||||| |||||||||||||||||||||||| ||  ||||||||||    
T  48497 taaaatctcaatcaaaatcgaaggattttacttaactacttttgtag 48543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 278
Target Start/End: Original strand, 61146 - 61195
Alignment:
Q  229 tcgtaaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    |||||||||| ||||||||||||||| |||||||| ||  ||||||||||    
T  61146 tcgtaaaatcacaatcaaaatcgaagaattttacttaactacttttgtag 61195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 278
Target Start/End: Complemental strand, 142923 - 142877
Alignment:
Q  232 taaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtag 278  Q
    |||||||||||| ||||| ||||||||||||||||| | ||||||||    
T  142923 taaaatcgcaattaaaattgaaggattttactcaaggagttttgtag 142877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 436
Target Start/End: Original strand, 144923 - 144963
Alignment:
Q  396 gcttatccaacaagaggaaaccacaactcaaggtttaacca 436  Q
    ||||||||||||||| | ||||||||||||||||| |||||    
T  144923 gcttatccaacaagaagcaaccacaactcaaggttgaacca 144963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0510 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0510
Description:

Target: scaffold0510; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 266
Target Start/End: Original strand, 36 - 73
Alignment:
Q  229 tcgtaaaatcgcaatcaaaatcgaaggattttactcaa 266  Q
    ||||||||||| || |||||||||||||||||||||||    
T  36 tcgtaaaatcgaaaccaaaatcgaaggattttactcaa 73  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1412 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1412
Description:

Target: scaffold1412; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 436
Target Start/End: Original strand, 25 - 65
Alignment:
Q  396 gcttatccaacaagaggaaaccacaactcaaggtttaacca 436  Q
    ||||||||||||||| | ||||||||||||||||| |||||    
T  25 gcttatccaacaagaagcaaccacaactcaaggttgaacca 65  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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