View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8329_low_5 (Length: 320)
Name: NF8329_low_5
Description: NF8329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8329_low_5 |
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| [»] scaffold0131 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 174 - 310
Target Start/End: Original strand, 2269002 - 2269138
Alignment:
| Q |
174 |
atttctaaaactagtataaatagatgcttttccatatttgcttttagtatttgctaaaaattcattctaataattgcagttacaatttcaggttggggaa |
273 |
Q |
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| T |
2269002 |
atttctaaaactagtataaatggatgcttttccatatttgcttttaatatttgctaaaaattcattctaataattgcagttattatttcaggttggggaa |
2269101 |
T |
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| Q |
274 |
aacaagtaataaagaaaaactttcttcatggtctctg |
310 |
Q |
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| T |
2269102 |
aacaagtaataaagaaaagctttcttcatggtctctg |
2269138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 206 - 310
Target Start/End: Complemental strand, 12287371 - 12287267
Alignment:
| Q |
206 |
catatttgcttttagtatttgctaaaaattcattctaataattgcagttacaatttcaggttggggaaaacaagtaataaagaaaaactttcttcatggt |
305 |
Q |
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| T |
12287371 |
catatttgctttgaatatttgctaaaatttcattctaataattgtggttattatttcaggttggggaaaacaagtaataaagaaaagctttctacattgt |
12287272 |
T |
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| Q |
306 |
ctctg |
310 |
Q |
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| T |
12287271 |
ctctg |
12287267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 12287743 - 12287675
Alignment:
| Q |
24 |
aattacaaccaccttcttttacttagcagtgaagtataaattgcctatagtaaattctgaagcaaatga |
92 |
Q |
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| T |
12287743 |
aattacaaccaacttcttttacttagcagtgaagtataaattgcctataataaattcttaagcaaatga |
12287675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 298
Target Start/End: Original strand, 32091815 - 32091905
Alignment:
| Q |
208 |
tatttgcttttagtatttgctaaaaattcattctaataattgcagttacaatttcaggttggggaaaacaagtaataaagaaaaactttct |
298 |
Q |
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| T |
32091815 |
tatttgctttcaatatttgctaaaaatttattctaataactgcggttattgtttcagattggggaaaacaagttaaaaagaaaagctttct |
32091905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 206 - 298
Target Start/End: Complemental strand, 9392138 - 9392046
Alignment:
| Q |
206 |
catatttgcttttagtatttgctaaaaattcattctaataattgcagttacaatttcaggttggggaaaacaagtaataaagaaaaactttct |
298 |
Q |
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| T |
9392138 |
catatttgcttttaatatttgctaaaaattcattctaataactgcggttattatttcaggttgggaaaaacaagtactaaagaaaatctttct |
9392046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0131 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0131
Description:
Target: scaffold0131; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 221 - 280
Target Start/End: Original strand, 13409 - 13468
Alignment:
| Q |
221 |
tatttgctaaaaattcattctaataattgcagttacaatttcaggttggggaaaacaagt |
280 |
Q |
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| T |
13409 |
tatttgctaaaaattcatactaataactgcagtcattatttcaggttggggaaaacaagt |
13468 |
T |
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