View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8329_low_6 (Length: 305)
Name: NF8329_low_6
Description: NF8329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8329_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 119 - 287
Target Start/End: Original strand, 17468273 - 17468441
Alignment:
| Q |
119 |
tagaatgtgggcctatgttcaatcttcttgacaattcatctggatgtttacattgcaaatttctacatatgaaacaagagttcagtactgatgaagagaa |
218 |
Q |
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| T |
17468273 |
tagaatgtgggcctatgttcaatcttcttgacaattcatctggatgtttacattgcaaatttctacatatgaaacaagagttcagtactgatgaagagaa |
17468372 |
T |
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| Q |
219 |
gttgacagcctgcgccgtcaaactggaagagtgagtccacaccacggacaacaatctattggacaagaa |
287 |
Q |
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| T |
17468373 |
gttgacagcctgcgccgtcaaactggaagagtgagtccacaccacggacaacaatctattggacaagaa |
17468441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 6672343 - 6672388
Alignment:
| Q |
23 |
tgcaggttaggaagattgtgaaatgaagacatggctaaaatttgag |
68 |
Q |
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| T |
6672343 |
tgcaggtttggaagattgtgaaatgaagatatggcaaaaatttgag |
6672388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 8e-24; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 23 - 185
Target Start/End: Complemental strand, 50831792 - 50831630
Alignment:
| Q |
23 |
tgcaggttaggaagattgtgaaatgaagacatggctaaaatttgaggggatgtt-tttaacgggtcagcacctattgttttaattgatagcagca-aata |
120 |
Q |
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| T |
50831792 |
tgcaggtttggaagattgtgaaatgaagatatgactaaaatttgaggggatgttattcaacaggtcatccccta-tattttagttgattgcaggacgtta |
50831694 |
T |
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| Q |
121 |
gaatgtgggcctatgttcaatcttcttgacaattcatctggatgtttacattgcaaatttctaca |
185 |
Q |
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| T |
50831693 |
aaatgcgggactatgttcaatattctatacaattcatctggat-tttacattgcaaatttctaca |
50831630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 23 - 185
Target Start/End: Original strand, 50844061 - 50844223
Alignment:
| Q |
23 |
tgcaggttaggaagattgtgaaatgaagacatggctaaaatttgaggggatgtt-tttaacgggtcagcacctattgttttaattgatagcagca-aata |
120 |
Q |
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| T |
50844061 |
tgcaggtttggaagattgtgaaatgaagatatgactaaaatttgaggggatgttattcaacaggtcatccccta-tattttagttgattgcaggacgtta |
50844159 |
T |
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| Q |
121 |
gaatgtgggcctatgttcaatcttcttgacaattcatctggatgtttacattgcaaatttctaca |
185 |
Q |
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| T |
50844160 |
aaatgcgggactatgttcaatattctatacaattcatctggat-tttacattgcaaatttctaca |
50844223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 184
Target Start/End: Complemental strand, 5574693 - 5574541
Alignment:
| Q |
32 |
ggaagattgtgaaatgaagacatggctaaaatttgaggggatgtt-tttaacgggtcagcacctattgttttaattgatagcagcaaatagaatgtgggc |
130 |
Q |
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| T |
5574693 |
ggaagattgtgaaatgcatatatggttaaaatttgaggggatgttattcaacgggtcatcacctattattttagttgatcgtagcacgtaaaatgcggga |
5574594 |
T |
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| Q |
131 |
ctatgttcaatcttcttgacaattcatctggatgtttacattgcaaatttctac |
184 |
Q |
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| T |
5574593 |
ctatgttcaatcttctatacggttcatttggat-tttacattccaaattactac |
5574541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 42318990 - 42319034
Alignment:
| Q |
23 |
tgcaggttaggaagattgtgaaatgaagacatggctaaaatttga |
67 |
Q |
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| T |
42318990 |
tgcaggtttggaagattgtgaaatgaagatatggctaaaatttga |
42319034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 45240825 - 45240780
Alignment:
| Q |
23 |
tgcaggttaggaagattgtgaaatgaagacatggctaaaatttgag |
68 |
Q |
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| T |
45240825 |
tgcaggtttggaagattgtgagatgaagatatggctaaaatttgag |
45240780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 176
Target Start/End: Complemental strand, 45240774 - 45240690
Alignment:
| Q |
91 |
acctattgttttaattgatagcagcaaatagaatgtgggcctatgttcaatcttcttgacaattcatctggatgtttacattgcaa |
176 |
Q |
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| T |
45240774 |
acctaatgttttagttgatagtagcatgtaaaatgcgggactatgttcaatcttttatacaattcatctggat-tttacaatgcaa |
45240690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 31662126 - 31662082
Alignment:
| Q |
23 |
tgcaggttaggaagattgtgaaatgaagacatggctaaaatttga |
67 |
Q |
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| T |
31662126 |
tgcaggtttggaagattgtgaaatgaagatatggctaaaatttga |
31662082 |
T |
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