View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8329_low_8 (Length: 280)
Name: NF8329_low_8
Description: NF8329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8329_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 43581431 - 43581703
Alignment:
| Q |
1 |
tcaacctccgcgtctgatggcacttgaggaggaagagggagtgtttccatcttggttgttttcagtagtcatccaaattatattctcaccttgaatcggc |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||| | |
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| T |
43581431 |
tcaacctccacgtctgatggcacttgaggaggaagagggagtgttttcgtcttggttgttttcagtagtcatccaaattattttctcaccttgaatcg-c |
43581529 |
T |
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| Q |
101 |
agatgcgtgcagctgtgattattgcaaggtgaagacaaggtgctgctgccatttcattctctttttgagtatttttcttggaaaatactgtttgtagcca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43581530 |
agatgcgtgcagctgtgattattgcaaggtgaagacaaggtgctgctgccatttcattctctttttgagtatttttcttggaaaatactgtttgtagccg |
43581629 |
T |
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| Q |
201 |
cagaaaatccaacgaatatttcccgagcagttatttacttgannnnnnncctaaactgtacccatgatgtccat |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
43581630 |
cagaaaatccaacgaatatttcccgagcagttatttacttgatttttttcctaaactgtacccatgatttccat |
43581703 |
T |
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