View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8330_high_1 (Length: 501)
Name: NF8330_high_1
Description: NF8330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8330_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 210 - 482
Target Start/End: Original strand, 28191184 - 28191456
Alignment:
| Q |
210 |
gaacttggaagggagggtcatgactaatgactcaccttatggatgtgtcatgtgagtgtgtatgtcattgtcggtaagtagaaataaaaaatctagacag |
309 |
Q |
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| T |
28191184 |
gaacttggaagggagggtcatgactaatgactcaccttatggatgtgtcatgtgagtgtgtatgtcattgtcggtaagtagaaataaaaaatctagacag |
28191283 |
T |
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| Q |
310 |
cttgcacctaccccttatgacacgttgctcttctaattcaaaatatttcatttatgttcttacaaattttggtgtaaattagatgaatgtattcaaaact |
409 |
Q |
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| T |
28191284 |
cttgcacctacccctcatgacacgttgctcttctaattcaaaatatttcatttatgttcttacaaattttggtgtaaattagatgaatgtattcaaaact |
28191383 |
T |
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| Q |
410 |
caagcttttttatgtcattgttaaacttccacgtatgatcttaaataaatgtgtagcatagtcctcaaatcac |
482 |
Q |
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| T |
28191384 |
cgagcttttttatgtcattgttaaacttccacgtatgatcttaaataaatgtgtaccatagtcctcaaatcac |
28191456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 58 - 176
Target Start/End: Original strand, 28191036 - 28191154
Alignment:
| Q |
58 |
ttgaagggtatttaagaagtgtcctaattggaggaagaaagaaatatttatctcgtgatagggtcagagttttggtgaagatattgaaggtagggttaag |
157 |
Q |
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| T |
28191036 |
ttgaagggtatttaagaagtgtcctaattggaggaagaaagaaatatttatctcgtgatagggtcagagttttggtgaagatattgaaggtagggttaag |
28191135 |
T |
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| Q |
158 |
gagagtagagagaaaatgt |
176 |
Q |
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| T |
28191136 |
gagagtagagagaaaatgt |
28191154 |
T |
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