View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8330_high_6 (Length: 331)
Name: NF8330_high_6
Description: NF8330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8330_high_6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 21 - 331
Target Start/End: Original strand, 40653360 - 40653670
Alignment:
| Q |
21 |
ggagtgacacactgcattcaggataaacaattatttgtgagttgcgtgaaactggcactcgctaaattgaattaaacaactccaacaaaccttattcatc |
120 |
Q |
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| T |
40653360 |
ggagtgacacactgcattcaggataaacaattatttgtgagttgcgtgaaactggcactcgctaaattgaattaaacaactccaacaaaccttattcatc |
40653459 |
T |
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| Q |
121 |
attccaaatacagagaacctgcaattaagaaaaattatctcatataattaactcatttttagagtatattatatataagattgagtcagcaactaccctt |
220 |
Q |
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| T |
40653460 |
attccaaatacagagaacctgcaattaagaaaaattatctcagataattaactcatttttagagtatattatatataagattgagtcagcaactaccctt |
40653559 |
T |
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| Q |
221 |
cttttgctctaccaattcccatgtggcttgggtgcttgtctatctggaatatttgtaatgcttcatgagatgctgcgtcaagtttgataaagttatctct |
320 |
Q |
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| T |
40653560 |
cttttgctctaccaattcccatgtggcttgggtgcttgtctatctggaatatttgtaatgcttcatgagatgctgcgtcaagtttgataaagttatttct |
40653659 |
T |
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| Q |
321 |
gcttctccact |
331 |
Q |
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| T |
40653660 |
gcatctccact |
40653670 |
T |
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Back To:
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Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 83 - 130
Target Start/End: Original strand, 21610412 - 21610459
Alignment:
| Q |
83 |
taaattgaattaaacaactccaacaaaccttattcatcattccaaata |
130 |
Q |
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| T |
21610412 |
taaattgaattaaacaactccaacaaaccttatttatcattccaaata |
21610459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 12206865 - 12206905
Alignment:
| Q |
67 |
tgaaactggcactcgctaaattgaattaaacaactccaaca |
107 |
Q |
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| T |
12206865 |
tgaaactgacactcactaaattgaattaaacaactccaaca |
12206905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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