View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8330_low_10 (Length: 321)
Name: NF8330_low_10
Description: NF8330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8330_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 20 - 315
Target Start/End: Complemental strand, 25925344 - 25925049
Alignment:
| Q |
20 |
attatgttattttggttatgggattggaccaaagtcaagagagggaatcacgtgatagagatgatttagagttgcctggtaagcaacaggaacttattaa |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25925344 |
attatgttattttggttatgggattggaccaaagtcaagagagggaatcacgtgatagagatgatttagagttgcctggtaagcaacaggaacttattaa |
25925245 |
T |
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| Q |
120 |
cagtgttgctaaagcttctaagaaacctgttattttggtcattttgtgtggtggtcctgttgatattacttttgctaagaataatgacaaaattggaggg |
219 |
Q |
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|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25925244 |
cagtgttgctaaagcttctaagaagcctgttattttggtgcttttgtgtggtggtcctgttgatattacttttgctaagaataatgacaaaattggaggg |
25925145 |
T |
|
| Q |
220 |
attatttgggctggttatcctggtgaacttggtggaagggctcttgctcaggttgtgtttggtgactataacccaggtttgttttcttctctgctt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25925144 |
attatttgggctggttatcctggtgaacttggtggaagggctcttgctcaggttgtgtttggtgactataacccaggtttgttttcttctatgctt |
25925049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 20 - 309
Target Start/End: Complemental strand, 25885221 - 25884932
Alignment:
| Q |
20 |
attatgttattttggttatgggattggaccaaagtcaagagagggaatcacgtgatagagatgatttagagttgcctggtaagcaacaggaacttattaa |
119 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||| |||| ||| |||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
25885221 |
attatgttattttggttatgggattagaccaaagtcaagagacggaaacacttgatagagatcatttagagttgcctggtaagcaacagaaacttattaa |
25885122 |
T |
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| Q |
120 |
cagtgttgctaaagcttctaagaaacctgttattttggtcattttgtgtggtggtcctgttgatattacttttgctaagaataatgacaaaattggaggg |
219 |
Q |
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|||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25885121 |
cagtgttgctaaagcttccaagaagcctgttattttggtaattttgtgtggtggtcctgttgatattacttttgctaagaataatgacaaaattggaggg |
25885022 |
T |
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| Q |
220 |
attatttgggctggttatcctggtgaacttggtggaagggctcttgctcaggttgtgtttggtgactataacccaggtttgttttcttct |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25885021 |
attatttgggctggttatcctggtgaacttggtggaagggctcttgctcaggttgtgtttggtgactataacccaggtttgttttcttct |
25884932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 20 - 315
Target Start/End: Complemental strand, 25906849 - 25906554
Alignment:
| Q |
20 |
attatgttattttggttatgggattggaccaaagtcaagagagggaatcacgtgatagagatgatttagagttgcctggtaagcaacaggaacttattaa |
119 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| |||| ||| |||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
25906849 |
attatgttattttggttatgggattagaccaaagtcaagagacggaaacacttgatagagatcatttagagttgcctggtaagcaacagaaacttattaa |
25906750 |
T |
|
| Q |
120 |
cagtgttgctaaagcttctaagaaacctgttattttggtcattttgtgtggtggtcctgttgatattacttttgctaagaataatgacaaaattggaggg |
219 |
Q |
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||||||||| |||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25906749 |
cagtgttgcgaaagcttctaagaagcctgttattttggtgcttttgtgcggtggtcctgttgatattacttttgctaagaataatgacaaaattggaggg |
25906650 |
T |
|
| Q |
220 |
attatttgggctggttatcctggtgaacttggtggaagggctcttgctcaggttgtgtttggtgactataacccaggtttgttttcttctctgctt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25906649 |
attatttgggctggttatcctggtgaacttggtggaagggctcttgctcaggttgtgtttggtgactataacccaggtttgttttcttctatgctt |
25906554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 20 - 309
Target Start/End: Original strand, 25960218 - 25960507
Alignment:
| Q |
20 |
attatgttattttggttatgggattggaccaaagtcaagagagggaatcacgtgatagagatgatttagagttgcctggtaagcaacaggaacttattaa |
119 |
Q |
| |
|
|||||||| | ||||||||||||||||| |||||||||||||| ||| || |||||||||||| ||||||||||| || || ||||||||||||||||| |
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| T |
25960218 |
attatgttgtgttggttatgggattggatcaaagtcaagagagtgaaggacatgatagagatgacttagagttgccagggaaacaacaggaacttattaa |
25960317 |
T |
|
| Q |
120 |
cagtgttgctaaagcttctaagaaacctgttattttggtcattttgtgtggtggtcctgttgatattacttttgctaagaataatgacaaaattggaggg |
219 |
Q |
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|||||||||||||| ||||| | ||| ||||||||||| |||| |||||||| |||||||||||| ||||||||||| | ||||||||||||||||| |
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| T |
25960318 |
tagtgttgctaaagcgtctaaaagaccggttattttggtacttttctgtggtggccctgttgatatttcttttgctaaggttgatgacaaaattggaggg |
25960417 |
T |
|
| Q |
220 |
attatttgggctggttatcctggtgaacttggtggaagggctcttgctcaggttgtgtttggtgactataacccaggtttgttttcttct |
309 |
Q |
| |
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||| | ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
25960418 |
attttgtgggctggttatcctggtgaacttggtggaatggctctggctcaggttgtgtttggtgactataaccctggttagttttcttct |
25960507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 248
Target Start/End: Complemental strand, 33421450 - 33421222
Alignment:
| Q |
20 |
attatgttattttggttatgggattggaccaaagtcaagagagggaatcacgtgatagagatgatttagagttgcctggtaagcaacaggaacttattaa |
119 |
Q |
| |
|
|||||||| || | |||||||||||||| |||||| |||||||||| |||||| | | | || | || ||||| || ||||||| || || ||||| |
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| T |
33421450 |
attatgttgttcttgttatgggattggatcaaagtgtagagagggaagagcgtgatcgtgttcatcttgacttgccaggcaagcaacttgagctcattaa |
33421351 |
T |
|
| Q |
120 |
cagtgttgctaaagcttctaagaaacctgttattttggtcattttgtgtggtggtcctgttgatattacttttgctaagaataatgacaaaattggaggg |
219 |
Q |
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||||||||| ||||||||||||| ||| ||||||||||| | | ||||| |||||| ||||||||| || ||||| ||||| || ||||||||||| |
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| T |
33421350 |
cagtgttgccaaagcttctaagagaccggttattttggtgctcctttgtggaggtcctattgatattagttcagctaaaaataacgataaaattggaggt |
33421251 |
T |
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| Q |
220 |
attatttgggctggttatcctggtgaact |
248 |
Q |
| |
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||||| |||||||||||||| |||||||| |
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| T |
33421250 |
attatctgggctggttatccgggtgaact |
33421222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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