View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8330_low_11 (Length: 309)
Name: NF8330_low_11
Description: NF8330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8330_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 19 - 298
Target Start/End: Complemental strand, 35233286 - 35233007
Alignment:
| Q |
19 |
ccaacaaacttggacagaatagctaatgaccaaccataaaataagtgtctttatattgaaatgttgtgaaggaaaacggaagcaccaacaaatttatgaa |
118 |
Q |
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| T |
35233286 |
ccaacaaacttggacagaatagctaatgaccaaccataaaataagtgtctttatattgaaatgttgtgaaggaaaacggaagcaccaacaaatttatgaa |
35233187 |
T |
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| Q |
119 |
acgcgctgcattatgtaagttcaacatctccaatgacaggaatattttcaaattacctccttgtaaaaactaaaaattccatcgccatttttctgcgaga |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
35233186 |
acgcgctgcattatgtaagttcaacatctccaatgacaggaatattttcaaattacccccttgtaaaaacaaaaaatttcatcgccatttttctgcgaga |
35233087 |
T |
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| Q |
219 |
ttctattactgtttatttctgcataagttcttactctaaagtttgtagctcttactaattacattttcttttcttttctt |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35233086 |
ttctattactgtttatttctgcataagttcttactctaaagtttgtagctcttactaattacattttcttttcttttctt |
35233007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 294
Target Start/End: Complemental strand, 29285381 - 29285107
Alignment:
| Q |
19 |
ccaacaaacttggacagaatagctaatgaccaaccataaaataagtgtctttatattgaaatgttgtgaaggaaaacggaagcaccaacaaatttatgaa |
118 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||| ||| ||||||| |
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| T |
29285381 |
ccaacaaacttggacagaatagctaacgaccaaccataaaataagtgtctgtatattgaaatgttgtgagggaaaacggaaacaccaaaaaacttatgaa |
29285282 |
T |
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| Q |
119 |
acgcgctgcattatgtaagttcaacatctccaatgacaggaatattttcaaattacctccttgtaaaaactaaaaattccatcgccatttttctgcgaga |
218 |
Q |
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| T |
29285281 |
tagtgctgcattatataagttcaacatctccaatgacaggaatattttcaaattacccccttgtaaaaactaaaaactccatcgcca-ttttctgtgaga |
29285183 |
T |
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| Q |
219 |
ttctattactgtttatttctgcataagttcttactctaaagtttgtagctcttactaattacattttcttttcttt |
294 |
Q |
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| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
29285182 |
tcctattactgtttatttctgcataagtgcttactataaagtttgtagctcttactaattacattttcttttcttt |
29285107 |
T |
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