View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8330_low_13 (Length: 285)

Name: NF8330_low_13
Description: NF8330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8330_low_13
NF8330_low_13
[»] chr1 (8 HSPs)
chr1 (19-257)||(246847-247085)
chr1 (19-159)||(8814358-8814498)
chr1 (21-160)||(235195-235334)
chr1 (19-257)||(251292-251530)
chr1 (19-164)||(231555-231706)
chr1 (191-246)||(8814259-8814314)
chr1 (19-63)||(4439840-4439884)
chr1 (194-241)||(235377-235424)
[»] chr6 (9 HSPs)
chr6 (73-165)||(7025790-7025882)
chr6 (73-164)||(7029847-7029938)
chr6 (19-163)||(7041476-7041620)
chr6 (194-240)||(212987-213033)
chr6 (19-149)||(7046819-7046949)
chr6 (73-163)||(9170851-9170941)
chr6 (73-163)||(7012854-7012944)
chr6 (19-163)||(9159487-9159637)
chr6 (205-257)||(7029994-7030046)
[»] chr3 (12 HSPs)
chr3 (32-161)||(9448307-9448436)
chr3 (19-130)||(41985608-41985719)
chr3 (19-161)||(9343825-9343967)
chr3 (19-129)||(9617489-9617599)
chr3 (78-163)||(9395298-9395383)
chr3 (19-64)||(9397765-9397810)
chr3 (19-64)||(9407346-9407391)
chr3 (19-64)||(9425553-9425598)
chr3 (76-129)||(41980891-41980944)
chr3 (20-130)||(9655382-9655492)
chr3 (19-63)||(9494900-9494944)
chr3 (20-64)||(9626571-9626615)
[»] chr5 (2 HSPs)
chr5 (194-257)||(33541813-33541876)
chr5 (19-55)||(18571088-18571124)
[»] chr2 (1 HSPs)
chr2 (19-63)||(20694393-20694437)


Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 19 - 257
Target Start/End: Original strand, 246847 - 247085
Alignment:
Q  19 acaattccctttgggaacacacaaatccaaagcagaagcagaaaattaccagaacaaccccaagaacaaaactatatcccctaaattagccaacttcacc 118  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  246847 acaattccctttgtgaacacacaaatccaaagcagaagcagaaaatgaccagaacaaccccaagaacaaaactgtatctcctaaattagccaacttcacc 246946  T
Q  119 catttcttctcccttgcattaagcttaaacacgtcaatccttacacatccgcgatcatcatcaaacctatgtttgtaaacatctattaacaacaaatcac 218  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  246947 catttcttctcccttgcattaagcttaaacaagtcaatccttacacatccgcgatcatcatcaaacctatgttcgtaaacatctattaacaacaaatcac 247046  T
Q  219 ccttgctctccactaagaatttaatatctccaacaccaa 257  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  247047 ccttgctctccactaagaatttaatatctccaccaccaa 247085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 19 - 159
Target Start/End: Complemental strand, 8814498 - 8814358
Alignment:
Q  19 acaattccctttgggaacacacaaatccaaagcagaagcagaaaattaccagaacaaccccaagaacaaaactatatcccctaaattagccaacttcacc 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | || ||  ||||||| ||||||||| ||||||||||||| ||||||||||||    
T  8814498 acaattccctttgggaacacacaaatccaaagcagaagcagaaaatgaacacaaggaccccaaaaacaaaactctatcccctaaattcgccaacttcacc 8814399  T
Q  119 catttcttctcccttgcattaagcttaaacacgtcaatcct 159  Q
    || ||||||||| || | ||||||||||||| |||||||||    
T  8814398 cacttcttctccttttcgttaagcttaaacatgtcaatcct 8814358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 21 - 160
Target Start/End: Original strand, 235195 - 235334
Alignment:
Q  21 aattccctttgggaacacacaaatccaaagcagaagcagaaaattaccagaacaaccccaagaacaaaactatatcccctaaattagccaacttcaccca 120  Q
    |||||||||||||||||||||||||| ||||||||||||||||  | || | |||||||||||| |||||| ||||||||||||| ||||||||||||||    
T  235195 aattccctttgggaacacacaaatccgaagcagaagcagaaaacgaacatagcaaccccaagaagaaaactctatcccctaaatttgccaacttcaccca 235294  T
Q  121 tttcttctcccttgcattaagcttaaacacgtcaatcctt 160  Q
     ||||||||| || |||||||||||||||||| |||||||    
T  235295 cttcttctccttttcattaagcttaaacacgttaatcctt 235334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 257
Target Start/End: Complemental strand, 251530 - 251292
Alignment:
Q  19 acaattccctttgggaacacacaaatccaaagcagaagcagaaaattaccagaacaaccccaagaacaaaactatatcccctaaattagccaacttcacc 118  Q
    |||||||| |||  |||||||||||||| | |||||| |||||||| | || | | ||||||||||||||||| ||||||||| ||| |||||||| |||    
T  251530 acaattccgtttccgaacacacaaatccgatgcagaaacagaaaatgaacatagccaccccaagaacaaaactctatcccctatattcgccaactttacc 251431  T
Q  119 catttcttctcccttgcattaagcttaaacacgtcaatccttacacatccgcgatcatcatcaaacctatgtttgtaaacatctattaacaacaaatcac 218  Q
    || ||||| ||| || |||||||||||||||||| |||||||| |  | |   |  | ||||||||||  | | ||||||||||  ||||||||||||||    
T  251430 cacttcttttccttttcattaagcttaaacacgttaatccttatatgttcatcaggagcatcaaacctccgctggtaaacatctgctaacaacaaatcac 251331  T
Q  219 ccttgctctccactaagaatttaatatctccaacaccaa 257  Q
      | ||||||||| |||||||||||||||||| ||||||    
T  251330 tgtcgctctccaccaagaatttaatatctccaccaccaa 251292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 231555 - 231706
Alignment:
Q  19 acaattccctttgggaacacacaaatccaaagcagaagcagaa------aattaccagaacaaccccaagaacaaaactatatcccctaaattagccaac 112  Q
    |||||||||||| |||||||| |||||||||||||||||||||      ||| | || |   ||||||||||||||||||||||||||||||||||||||    
T  231555 acaattcccttttggaacacataaatccaaagcagaagcagaagcagaaaatgaacatagggaccccaagaacaaaactatatcccctaaattagccaac 231654  T
Q  113 ttcacccatttcttctcccttgcattaagcttaaacacgtcaatccttacac 164  Q
    |||||||| ||| ||||| ||||||| ||||||||||| || ||||||||||    
T  231655 ttcacccacttcatctcctttgcattgagcttaaacacatctatccttacac 231706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 191 - 246
Target Start/End: Complemental strand, 8814314 - 8814259
Alignment:
Q  191 ttgtaaacatctattaacaacaaatcacccttgctctccactaagaatttaatatc 246  Q
    ||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||    
T  8814314 ttgtaaacatctgctaacaacaaatcacccttgctctccactaggaatttaatatc 8814259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 4439840 - 4439884
Alignment:
Q  19 acaattccctttgggaacacacaaatccaaagcagaagcagaaaa 63  Q
    |||||||||||| | ||||||||||||| ||||||||||||||||    
T  4439840 acaattccctttagaaacacacaaatccgaagcagaagcagaaaa 4439884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 241
Target Start/End: Original strand, 235377 - 235424
Alignment:
Q  194 taaacatctattaacaacaaatcacccttgctctccactaagaattta 241  Q
    |||||||||  ||||||||||||||| | |||||||||||||||||||    
T  235377 taaacatctgctaacaacaaatcaccgtcgctctccactaagaattta 235424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 73 - 165
Target Start/End: Original strand, 7025790 - 7025882
Alignment:
Q  73 caaccccaagaacaaaactatatcccctaaattagccaacttcacccatttcttctcccttgcattaagcttaaacacgtcaatccttacaca 165  Q
    ||||||||||||||||||  |||| |||||| | | |||||||||||| ||||||||| |  |||||||||||||||  ||||||||||||||    
T  7025790 caaccccaagaacaaaaccctatctcctaaactcgtcaacttcacccacttcttctccttctcattaagcttaaacaaatcaatccttacaca 7025882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 73 - 164
Target Start/End: Original strand, 7029847 - 7029938
Alignment:
Q  73 caaccccaagaacaaaactatatcccctaaattagccaacttcacccatttcttctcccttgcattaagcttaaacacgtcaatccttacac 164  Q
    ||||||||||||||||||  ||||||| ||| | | |||||||||||| ||||||||| |  |||||||||||||||  |||||||||||||    
T  7029847 caaccccaagaacaaaaccctatccccgaaactcgtcaacttcacccacttcttctccttctcattaagcttaaacaaatcaatccttacac 7029938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 163
Target Start/End: Original strand, 7041476 - 7041620
Alignment:
Q  19 acaattccctttgggaacacacaaatccaaagcagaagcagaaaattaccagaacaaccccaagaacaaaactatatcccctaaattagccaacttcacc 118  Q
    |||||||||||||| ||| ||||||||| |||||||| |||| ||  | || |     ||||||||||||||  ||||||||||| ||| ||||||||||    
T  7041476 acaattccctttggcaacgcacaaatccgaagcagaaacagagaacgaacatacttctcccaagaacaaaaccctatcccctaaactagtcaacttcacc 7041575  T
Q  119 catttcttctcccttgcattaagcttaaacacgtcaatccttaca 163  Q
    || ||||||||| |  ||||||| |||||||  ||||||| ||||    
T  7041576 cacttcttctccttctcattaagtttaaacaaatcaatccataca 7041620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 213033 - 212987
Alignment:
Q  194 taaacatctattaacaacaaatcacccttgctctccactaagaattt 240  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||    
T  213033 taaacatctactaacaacaaatcaccctcgctctccactaagaattt 212987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 7046819 - 7046949
Alignment:
Q  19 acaattccctttgggaacacacaaatccaaagcagaagcagaaaattaccagaacaaccccaagaacaaaactatatcccctaaattagccaacttcacc 118  Q
    |||||||||||||| |||| |||||||  ||  ||||||||||||  | ||    | |||||||||||||||| ||||||||||| | |  |||||||||    
T  7046819 acaattccctttggcaacatacaaatctgaaaaagaagcagaaaacgaacattttatccccaagaacaaaactttatcccctaaactcgttaacttcacc 7046918  T
Q  119 catttcttctcccttgcattaagcttaaaca 149  Q
    || ||||||||| |  |||||||||||||||    
T  7046919 cacttcttctccttctcattaagcttaaaca 7046949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 73 - 163
Target Start/End: Original strand, 9170851 - 9170941
Alignment:
Q  73 caaccccaagaacaaaactatatcccctaaattagccaacttcacccatttcttctcccttgcattaagcttaaacacgtcaatccttaca 163  Q
    ||||||||||||||||||  ||||||||||| | |  || |||||||| ||||||||| |  |||||||||||||||  ||||||||||||    
T  9170851 caaccccaagaacaaaaccctatcccctaaactcgttaatttcacccacttcttctccttctcattaagcttaaacaaatcaatccttaca 9170941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 163
Target Start/End: Original strand, 7012854 - 7012944
Alignment:
Q  73 caaccccaagaacaaaactatatcccctaaattagccaacttcacccatttcttctcccttgcattaagcttaaacacgtcaatccttaca 163  Q
    |||||||||||||||||   |||| |||||| | | |||||||||||| ||||||||| |  |||||||||||||||  ||||| ||||||    
T  7012854 caaccccaagaacaaaatcctatctcctaaacttgtcaacttcacccacttcttctccttctcattaagcttaaacaaatcaattcttaca 7012944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 163
Target Start/End: Complemental strand, 9159637 - 9159487
Alignment:
Q  19 acaattccctttgggaacacacaaatccaaagcagaagcagaaaa-----ttacc-agaacaaccccaagaacaaaactatatcccctaaattagccaac 112  Q
    |||||||||||||| ||||||||||||  |||||||| |||||||      |||| |   ||||||||||||||||||  ||||||||||| | |  ||     
T  9159637 acaattccctttggaaacacacaaatctgaagcagaaacagaaaacgaatataccaaccccaaccccaagaacaaaaccctatcccctaaactcgttaat 9159538  T
Q  113 ttcacccatttcttctcccttgcattaagcttaaacacgtcaatccttaca 163  Q
    |||||||| ||||||||| |  | |||||||||||||  ||||||||||||    
T  9159537 ttcacccacttcttctccttctcgttaagcttaaacaaatcaatccttaca 9159487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 7029994 - 7030046
Alignment:
Q  205 taacaacaaatcacccttgctctccactaagaatttaatatctccaacaccaa 257  Q
    |||||||||||| |||| |||||||||||||||||| | || |||| ||||||    
T  7029994 taacaacaaatccccctcgctctccactaagaatttcacatttccaccaccaa 7030046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 32 - 161
Target Start/End: Original strand, 9448307 - 9448436
Alignment:
Q  32 ggaacacacaaatccaaagcagaagcagaaaattaccagaacaaccccaagaacaaaactatatcccctaaattagccaacttcacccatttcttctccc 131  Q
    |||| |||||||||| ||||||||||||||||  | |||     |||||||||||||||  ||||||||||| | |  |||||||||||||||||||||     
T  9448307 ggaagacacaaatccgaagcagaagcagaaaacgaacagtcattccccaagaacaaaacactatcccctaaagttgttaacttcacccatttcttctcct 9448406  T
Q  132 ttgcattaagcttaaacacgtcaatcctta 161  Q
    |  ||| |||||||||||| |||| |||||    
T  9448407 tctcataaagcttaaacacatcaaccctta 9448436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 41985608 - 41985719
Alignment:
Q  19 acaattccctttgggaacacacaaatccaaagcagaagcagaaaattaccagaacaaccccaagaacaaaactatatcccctaaattagccaacttcacc 118  Q
    |||||| ||||||  |||| |||||||| ||||||||||||||||  | ||      |||||||||||||||| ||||||||||| | |||||||| |||    
T  41985608 acaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacc 41985707  T
Q  119 catttcttctcc 130  Q
    ||||||||||||    
T  41985708 catttcttctcc 41985719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 9343825 - 9343967
Alignment:
Q  19 acaattccctttgggaacacacaaatccaaagcagaagcagaaaattaccagaacaaccccaagaacaaaactatatcccctaaattagccaacttcacc 118  Q
    |||||| ||| | ||||||||||||||| ||||||||||||||||  | ||      |||||||||||||||  ||||||||||| | |  |||||||||    
T  9343825 acaatttcctctaggaacacacaaatccgaagcagaagcagaaaacgaacattcattccccaagaacaaaacactatcccctaaagttgttaacttcacc 9343924  T
Q  119 catttcttctcccttgcattaagcttaaacacgtcaatcctta 161  Q
    || ||||||||| |  ||| |||||||||||| |||| |||||    
T  9343925 cacttcttctccatctcatcaagcttaaacacatcaaccctta 9343967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 9617599 - 9617489
Alignment:
Q  19 acaattccctttgggaacacacaaatccaaagcagaagcagaaaattaccagaacaaccccaa-gaacaaaactatatcccctaaattagccaacttcac 117  Q
    |||||||||||||| ||||||||||||  ||||||||||||||||| | ||   ||  | ||| |||||||||  |||||||||||||   |||||||||    
T  9617599 acaattccctttggaaacacacaaatctgaagcagaagcagaaaatgaaca-tccattcacaaggaacaaaaccctatcccctaaatttttcaacttcac 9617501  T
Q  118 ccatttcttctc 129  Q
    ||||||||||||    
T  9617500 ccatttcttctc 9617489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 163
Target Start/End: Original strand, 9395298 - 9395383
Alignment:
Q  78 ccaagaacaaaactatatcccctaaattagccaacttcacccatttcttctcccttgcattaagcttaaacacgtcaatccttaca 163  Q
    ||||||||||||| | ||| |||||||||| |||||||||||| || |||| | |  ||| |||| ||||||| ||||||||||||    
T  9395298 ccaagaacaaaaccaaatctcctaaattagtcaacttcacccactttttctgcttctcatcaagcctaaacacatcaatccttaca 9395383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 9397765 - 9397810
Alignment:
Q  19 acaattccctttgggaacacacaaatccaaagcagaagcagaaaat 64  Q
    |||||||||||||| |||||||||||||||||| ||||| ||||||    
T  9397765 acaattccctttggcaacacacaaatccaaagctgaagcggaaaat 9397810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 9407346 - 9407391
Alignment:
Q  19 acaattccctttgggaacacacaaatccaaagcagaagcagaaaat 64  Q
    |||||||||||||| ||||||||||||| |||| ||||||||||||    
T  9407346 acaattccctttggcaacacacaaatccgaagctgaagcagaaaat 9407391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 9425553 - 9425598
Alignment:
Q  19 acaattccctttgggaacacacaaatccaaagcagaagcagaaaat 64  Q
    |||||||||||||| ||||||||||||| |||| ||||||||||||    
T  9425553 acaattccctttggcaacacacaaatccgaagctgaagcagaaaat 9425598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 41980891 - 41980944
Alignment:
Q  76 ccccaagaacaaaactatatcccctaaattagccaacttcacccatttcttctc 129  Q
    |||||||||||||||| ||||||||||| | | |||||| ||||||||||||||    
T  41980891 ccccaagaacaaaactctatcccctaaactcgtcaacttgacccatttcttctc 41980944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 130
Target Start/End: Complemental strand, 9655492 - 9655382
Alignment:
Q  20 caattccctttgggaacacacaaatccaaagcagaagcagaaaattaccagaacaaccccaagaacaaaactatatcccctaaattagccaacttcaccc 119  Q
    ||||||||||||| ||||||||||||| |||| || ||||||||  | ||       ||||| ||||||||  |||||||||||||   |||||||||||    
T  9655492 caattccctttggaaacacacaaatccgaagctgatgcagaaaacgaacatccttcgcccaaaaacaaaaccctatcccctaaattcatcaacttcaccc 9655393  T
Q  120 atttcttctcc 130  Q
    |||||||||||    
T  9655392 atttcttctcc 9655382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 9494944 - 9494900
Alignment:
Q  19 acaattccctttgggaacacacaaatccaaagcagaagcagaaaa 63  Q
    |||||||||||||| ||| ||||||||  ||||||||||||||||    
T  9494944 acaattccctttggaaacgcacaaatcagaagcagaagcagaaaa 9494900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 9626615 - 9626571
Alignment:
Q  20 caattccctttgggaacacacaaatccaaagcagaagcagaaaat 64  Q
    ||||||||||||| ||||||||||||| |||| || |||||||||    
T  9626615 caattccctttggaaacacacaaatccgaagctgatgcagaaaat 9626571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 194 - 257
Target Start/End: Original strand, 33541813 - 33541876
Alignment:
Q  194 taaacatctattaacaacaaatcacccttgctctccactaagaatttaatatctccaacaccaa 257  Q
    |||||||| | |||||||||||||||||||||||||||||||||||| |  |||||| ||||||    
T  33541813 taaacatccactaacaacaaatcacccttgctctccactaagaatttgacgtctccaccaccaa 33541876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 18571088 - 18571124
Alignment:
Q  19 acaattccctttgggaacacacaaatccaaagcagaa 55  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  18571088 acaattccctttggaaacacacaaatccgaagcagaa 18571124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 20694437 - 20694393
Alignment:
Q  19 acaattccctttgggaacacacaaatccaaagcagaagcagaaaa 63  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||    
T  20694437 acaattccctttggcaacacacaaatccgaagcagaagcagaaaa 20694393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University