View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8330_low_15 (Length: 252)
Name: NF8330_low_15
Description: NF8330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8330_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 14 - 192
Target Start/End: Original strand, 52344117 - 52344295
Alignment:
| Q |
14 |
agagacggtattgggacacatatcctccaattgagatttgatgtcatctattaactcaaaacctcttagcgaatttgcatttggaaatgcgttcttctct |
113 |
Q |
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| T |
52344117 |
agagacagtattgggacacatatcctccaattgagatttgatgtcatctattaactcaaaacctcttagcgaatttgcatttggaaatgcgttcttctct |
52344216 |
T |
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| Q |
114 |
cctgtgaaatttgatgtgtcgtctaacaatgctgatgcatcacatccctgcatgtatgtgtatagtacatgatatatat |
192 |
Q |
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| T |
52344217 |
cctgtgaaatttgatgtgtcgtctaacaatgctgatgcatcacatccctgcatgtatgtgtatagtacatgatatatat |
52344295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 38 - 167
Target Start/End: Original strand, 9155556 - 9155685
Alignment:
| Q |
38 |
ctccaattgagatttgatgtcatctattaactcaaaacctcttagcgaatttgcatttggaaatgcgttcttctctcctgtgaaatttgatgtgtcgtct |
137 |
Q |
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| T |
9155556 |
ctccaatgtagatttgatgtcgtcaattaactcaaaacctcttagcgagtttgcgttttgtaaagaattcttctcacctttgaaacttgacgtgtcgtct |
9155655 |
T |
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| Q |
138 |
aacaatgctgatgcatcacatccctgcatg |
167 |
Q |
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| T |
9155656 |
agcaatactgatccatcacatccctgcatg |
9155685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 162
Target Start/End: Complemental strand, 26960917 - 26960872
Alignment:
| Q |
117 |
gtgaaatttgatgtgtcgtctaacaatgctgatgcatcacatccct |
162 |
Q |
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| T |
26960917 |
gtgaaacttgatgtatcgtctaacagtactgatgcatcacatccct |
26960872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 165
Target Start/End: Complemental strand, 27202151 - 27202093
Alignment:
| Q |
107 |
cttctctcctgtgaaatttgatgtgtcgtctaacaatgctgatgcatcacatccctgca |
165 |
Q |
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| T |
27202151 |
cttctctccggtgaagcttgaagtgtcgtctaacaggactgatgcatcacatccctgca |
27202093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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