View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8330_low_16 (Length: 244)
Name: NF8330_low_16
Description: NF8330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8330_low_16 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: scaffold0015 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 244
Target Start/End: Complemental strand, 177891 - 177664
Alignment:
| Q |
17 |
catcactacaaaatccgccgggaatacaaatttatcaactttaacaagcacatcttcggctattcccaatggtgttgcaaatgatttatcggccaactgc |
116 |
Q |
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| T |
177891 |
catcactacaaaatccgccgggaatacaaatttatcaactttaacaagcacatcttcggctattcccaatggtgttgcaaatgatttatcggccaattgc |
177792 |
T |
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| Q |
117 |
aaggtcatcctagtccgcttgatacataaatcaccaactcttttggcgacggacaaaggcatgagatttatgcttgaaccaaggtcaagtagtgccttac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
177791 |
aaggtcatcctagtccgcttgatacataaatcaccaactcttttggcgacggacaaaggcatgagatttatgcttgaaccaaggtcaagtagtgccttac |
177692 |
T |
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| Q |
217 |
caacattgatagtgcctatagctaccgg |
244 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
177691 |
caacattgatagtgcctatagctaccgg |
177664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 17 - 242
Target Start/End: Complemental strand, 20171512 - 20171287
Alignment:
| Q |
17 |
catcactacaaaatccgccgggaatacaaatttatcaactttaacaagcacatcttcggctattcccaatggtgttgcaaatgatttatcggccaactgc |
116 |
Q |
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|||||| ||||||||| ||| || | ||||||||||||||| || |||||||| || ||||||||||||||| ||| | |||||||||||||| ||| |
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| T |
20171512 |
catcaccacaaaatccaccgaaaagaaaaatttatcaactttcactagcacatcctccgctattcccaatggttttgtgtaggatttatcggccaattgc |
20171413 |
T |
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| Q |
117 |
aaggtcatcctagtccgcttgatacataaatcaccaactcttttggcgacggacaaaggcatgagatttatgcttgaaccaaggtcaagtagtgccttac |
216 |
Q |
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|| ||||||||||||||||| ||||| || ||||||||||||||||| || |||||||||||||| || |||||||| ||||| |||||||||| || | |
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| T |
20171412 |
aaagtcatcctagtccgcttaatacacaagtcaccaactcttttggcaacagacaaaggcatgaggttgatgcttgagccaagatcaagtagtgatttgc |
20171313 |
T |
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| Q |
217 |
caacattgatagtgcctatagctacc |
242 |
Q |
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|||||| |||||||||||||||||| |
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| T |
20171312 |
caacatgaatagtgcctatagctacc |
20171287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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