View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8330_low_17 (Length: 238)
Name: NF8330_low_17
Description: NF8330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8330_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 14 - 220
Target Start/End: Original strand, 1726784 - 1726990
Alignment:
| Q |
14 |
gatgaacttgatgaagaaactaatgaagaagaagccattatgactttgatggcttcaacaatttatgatgtagaatctgaagtagattatgatgatgatg |
113 |
Q |
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| T |
1726784 |
gatgaacttgatgaagaaactaatgaagaagaagccaatatgactttgatggcttcaacaacttatgatgtagaatctgaagtagatgatgatgatgatg |
1726883 |
T |
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| Q |
114 |
atgaagtattttctaaactgactcgcgaagaggttgtcaattctatgtcgttgtcttatcaaatcataaaacttaannnnnnnnacaaaggaaatatgat |
213 |
Q |
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| T |
1726884 |
atgaagtattttctaaactgactcgcgaagaggttgtcaattctatgtcgttgtcttagcaaatcaaaaagtttaattttttttacaaaggaaatatgat |
1726983 |
T |
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| Q |
214 |
ttagtgg |
220 |
Q |
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| T |
1726984 |
ttagtgg |
1726990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 32 - 127
Target Start/End: Original strand, 15668581 - 15668676
Alignment:
| Q |
32 |
actaatgaagaagaagccattatgactttgatggcttcaacaatttatgatgtagaatctgaagtagattatgatgatgatgatgaagtattttct |
127 |
Q |
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| T |
15668581 |
actaatgaagaagaagccaatttggcattgatggcttcaacgacttctgatgtagaatctgaagttgattttcattctgatgataaattattttct |
15668676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 137
Target Start/End: Original strand, 11450463 - 11450499
Alignment:
| Q |
101 |
tatgatgatgatgatgaagtattttctaaactgactc |
137 |
Q |
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| T |
11450463 |
tatgatgatgatgatgaggtattctctaaactgactc |
11450499 |
T |
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