View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8330_low_19 (Length: 224)
Name: NF8330_low_19
Description: NF8330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8330_low_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 182; Significance: 1e-98; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 13 - 206
Target Start/End: Complemental strand, 18738340 - 18738147
Alignment:
| Q |
13 |
atgaagagagtcatagggaattgtgcttccaatagtgttggagtgttctgcaagaaactcgacacccaagttagctgtgaaggtttttccattggtgaca |
112 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
18738340 |
atgaagagagtcatagtgaattgtgcttccaatagtgttggagtgttctgcaagaaactcgacacccaagttagctgtgaaagtttttccattggtgaca |
18738241 |
T |
|
| Q |
113 |
ttaagaacagttgaagttgttgaatggagtgtgaaagaaggagttagaggaatgaagaacaatgcgatcgaacatgcgagaatcaagatcatcc |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
18738240 |
ttaagaacagttgaagttgttgaatggagtgtgaaagaaggagttagaggaatgaagaacaatgcaatcgaacatgcgagaatcaagatcatcc |
18738147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 11 - 206
Target Start/End: Complemental strand, 18717677 - 18717482
Alignment:
| Q |
11 |
agatgaagagagtcatagggaattgtgcttccaatagtgttggagtgttctgcaagaaactcgacacccaagttagctgtgaaggtttttccattggtga |
110 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||| ||||| |
|
|
| T |
18717677 |
agatgaagatagtcatagtgaattgtgcttccaatagtgttggagtgttccgcaagaaactcgacacctaagttggctgtgaaggtttttccatcggtga |
18717578 |
T |
|
| Q |
111 |
cattaagaacagttgaagttgttgaatggagtgtgaaagaaggagttagaggaatgaagaacaatgcgatcgaacatgcgagaatcaagatcatcc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18717577 |
cattaagaacagttgaagttgttgaatggagtgtgaaagaaggagttagaggaatgaagaacaatgcgatcgaacatgcgagaatcaagatcatcc |
18717482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 13 - 206
Target Start/End: Complemental strand, 18671668 - 18671475
Alignment:
| Q |
13 |
atgaagagagtcatagggaattgtgcttccaatagtgttggagtgttctgcaagaaactcgacacccaagttagctgtgaaggtttttccattggtgaca |
112 |
Q |
| |
|
||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
18671668 |
atgaagagaatcatagtgaactgtgcttccaatagtgttggagtgttctgcaagaaactcaacacccaagttggctgtgaaggtttttccattggtgaca |
18671569 |
T |
|
| Q |
113 |
ttaagaacagttgaagttgttgaatggagtgtgaaagaaggagttagaggaatgaagaacaatgcgatcgaacatgcgagaatcaagatcatcc |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
18671568 |
ttaagaacagttgaagttgttgaatggagtgtgaaagaaggagttagaggaatgaagaacaatgcgatcgaacatgcaagaatcaagatcatcc |
18671475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 11 - 206
Target Start/End: Complemental strand, 18649212 - 18649017
Alignment:
| Q |
11 |
agatgaagagagtcatagggaattgtgcttccaatagtgttggagtgttctgcaagaaactcgacacccaagttagctgtgaaggtttttccattggtga |
110 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||| ||||||||||||||||||||| |
|
|
| T |
18649212 |
agatgaagagagtcatagtgaattgtgcttccaatagtgttggagtgttccgcaagaaactcgacacctaagttggctttgaaggtttttccattggtga |
18649113 |
T |
|
| Q |
111 |
cattaagaacagttgaagttgttgaatggagtgtgaaagaaggagttagaggaatgaagaacaatgcgatcgaacatgcgagaatcaagatcatcc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
18649112 |
cattaagaacagttgaagttgttgaatggagtgtgaaagaaggagttagaggaacgaagaacaatgcgattgaacatgtgagaatcaagatcatcc |
18649017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 13 - 206
Target Start/End: Complemental strand, 18684942 - 18684749
Alignment:
| Q |
13 |
atgaagagagtcatagggaattgtgcttccaatagtgttggagtgttctgcaagaaactcgacacccaagttagctgtgaaggtttttccattggtgaca |
112 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
18684942 |
atgaagagaatcatagtgaattgtgcttccaatagtgttggagtattccgcaagaaactcgacacccaagttggctgtgaaggtttttccattggtaaca |
18684843 |
T |
|
| Q |
113 |
ttaagaacagttgaagttgttgaatggagtgtgaaagaaggagttagaggaatgaagaacaatgcgatcgaacatgcgagaatcaagatcatcc |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
18684842 |
ttaagaacagttgaagttgttgaatggagtgtgaaagaaggagttagggggatgaagaacaaggcgatcgaacatgtgagaatcaagatcatcc |
18684749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 18665904 - 18665862
Alignment:
| Q |
13 |
atgaagagagtcatagggaattgtgcttccaatagtgttggag |
55 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
18665904 |
atgaagagagtcatagtgaattgtgcttccaatagtgttggag |
18665862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University