View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8330_low_2 (Length: 461)
Name: NF8330_low_2
Description: NF8330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8330_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 131; Significance: 9e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 233 - 443
Target Start/End: Complemental strand, 32270507 - 32270300
Alignment:
| Q |
233 |
atgtctgtcttgattcaataacctgccgaactcaatttaatatgccgaactcaattatgtaacacttttgattctttctgtcaatgatgggccacaatcg |
332 |
Q |
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| T |
32270507 |
atgtctgtcttgattcaataacctgccgaactcaatttaatctgctgaactcaattatgtaacacttttgattatttctttcaaggatggaccataatcg |
32270408 |
T |
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| Q |
333 |
cataaaaggatggtcctttttaattttgtgcatactttgtcaatgttatgctttattgaaaataaaagagaagacaaagtttttactagtagtagtaacc |
432 |
Q |
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| T |
32270407 |
cataaaaggatggtcttttttaa-tttgtgcctactttgtcaatgttatgctttattgaaaataaaaaagaaggcaaa-tttgtacttgtagtagt-agc |
32270311 |
T |
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| Q |
433 |
ataggagaaag |
443 |
Q |
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| T |
32270310 |
ataggagaaag |
32270300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 32270620 - 32270508
Alignment:
| Q |
64 |
gagattctttccactttttaaagttgtccctttgtgttgaaacttcttttttaatcattcaagatcaagtacttcttctttttcaaacctttgtttttaa |
163 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
32270620 |
gagactctttccacttcttaaagttgtccctttgtgttgaaacttcttttttaatcattcaagatcaagtacttcttctttttcaatcctttgcttttaa |
32270521 |
T |
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| Q |
164 |
ttattgaatagtt |
176 |
Q |
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| T |
32270520 |
ttattgaatagtt |
32270508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 12887699 - 12887759
Alignment:
| Q |
50 |
aaatggaaaacatagagattctttccactttttaaagttgtccctttgtgttgaaacttctt |
111 |
Q |
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| T |
12887699 |
aaatggaaaacatagagattctttcaacttattaaagttgt-cttttgtgttggaacttctt |
12887759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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