View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8330_low_21 (Length: 211)

Name: NF8330_low_21

Description: NF8330

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF8330_low_21

[»] chr3 (2 HSPs)

Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 2)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 143; E-Value: 3e-75

Query Start/End: Original strand, 16 - 194

Target Start/End: Original strand, 26411151 - 26411329

Alignment:

Q	16	tacttgatacctaagggtagtcatgttttgattaaaagaagtgggagaaatccattagtttgggatgaaccacataagttcaaaccagaacgacatttca	115	Q
		\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	26411151	tactttataccaaagggtagccatgtattgattaaaagaagtgggagaaatccattactttgggatgaaccacataagttcaaaccagaacgccatttca	26411250	T

Q	116	agaatggcgagtccaatatagttttgacatagccagatttgaagttcatatcctttagcactggaatgcgtagttgtcc	194	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	26411251	agaatggtgagtccaatatagttttgacagagccaggtttgaagttcatatcctttagcactggaatgcgtagttgtcc	26411329	T

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Target: chr3; HSP #2

Raw Score: 33; E-Value: 0.000000001

Query Start/End: Original strand, 57 - 173

Target Start/End: Original strand, 27699710 - 27699826

Alignment:

Q	57	tgggagaaatccattagtttgggatgaaccacataagttcaaaccagaacgacatttcaagaatggcgagtccaatatagttttgacatagccagatttg	156	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\| \|\|\|\|\|\| \| \|\| \|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\| \| \|\|\|\|\|\|\| \| \|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|
T	27699710	tgggagaaatccaaaagtatggactgaaccctacaaattcaagccagaacgtcatcttaagaatgatgggtctaatatagctttgacagagccagaattg	27699809	T

Q	157	aagttcatatcctttag	173	Q
		\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	27699810	aagttcataacctttag	27699826	T

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