View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8330_low_6 (Length: 357)
Name: NF8330_low_6
Description: NF8330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8330_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 40925044 - 40925381
Alignment:
| Q |
1 |
gagagagaatggattgagagaaggcttaaagagaattcacaaatatttacctgtgctggttgaaatctggggataatatagagatgaatgtgcaccttaa |
100 |
Q |
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| T |
40925044 |
gagagagaatggattgagagaaggcttaaa-agaattcacaaatatttacctgtgctggttgaaatctggggataatatagagatgaatgtgcaccttaa |
40925142 |
T |
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| Q |
101 |
tgaatcaatttacaaaggaatgaatgttgtttatgcggtgtatgattcattttatatatgatttgtttcattgtaatatctgtaaaatataattgtgctt |
200 |
Q |
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| T |
40925143 |
tgaatcaatttacaaaggaatgaatgttgtttatgcgctgtatgattcattttatatatgatttgtttcattgtaatatctgtaaaatataattgtgctt |
40925242 |
T |
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| Q |
201 |
ttcttttggtacagaaagagcgatataattttatcttttatattacagaattatgataaatcattgaggtcaaatatcaaaatcattttgtatggacata |
300 |
Q |
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| T |
40925243 |
ttcttttggtacagaaagagcgatataattttatcttttatattacagaattatgataaatcattgaggtcaaatatcaaaatcattttgtatggacata |
40925342 |
T |
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| Q |
301 |
aaaatcatttatttattattgattttcacattgggaaac |
339 |
Q |
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| T |
40925343 |
aaaatcatttatttattattgattttcacattgggaaac |
40925381 |
T |
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