View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8330_low_7 (Length: 337)
Name: NF8330_low_7
Description: NF8330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8330_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 7 - 309
Target Start/End: Complemental strand, 8289117 - 8288815
Alignment:
| Q |
7 |
tgagatggacatcaggtcagtgtaagcaggaatgtcatattgcaatctggcatgaacaacataataggtgttggcaatgtcgtcactacctcccaccaca |
106 |
Q |
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| T |
8289117 |
tgagttggacataaggtcagtgtaagcaggaatgtcatattgcaatctggcatgaacaacataataggtgttggcaatgtcgtcactacctcccacaaca |
8289018 |
T |
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| Q |
107 |
acaaaaagactattggccagtatgaagtttgttctttcctcaccaacaatgcctttcaacttcccaatgtattctttgaacatgtctagttgagcagata |
206 |
Q |
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| T |
8289017 |
acaaaaagactattggccagtatgaagtttgttctttcctcaccaacaatgcctttcaacttcccaatgtattctttgaacatgtctagttgagcagata |
8288918 |
T |
|
| Q |
207 |
atggtattactgactgattacattgtacaagcaattcacaaaacaatggtcaatagcaattatcaatttcgacccacactaaagtctattttaacatcaa |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
8288917 |
atggtattactgactgattacattgtacaagcaattcacaaaacaatggtcaatagcaattatcaatttccacccacactaaagtcaattttaacatcaa |
8288818 |
T |
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| Q |
307 |
att |
309 |
Q |
| |
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||| |
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| T |
8288817 |
att |
8288815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 101 - 226
Target Start/End: Complemental strand, 8233076 - 8232951
Alignment:
| Q |
101 |
accacaacaaaaagactattggccagtatgaagtttgttctttcctcaccaacaatgcctttcaacttcccaatgtattctttgaacatgtctagttgag |
200 |
Q |
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| T |
8233076 |
accacaaggaaaagactatttgccaagatgaagtttgttctgtcttctccaacaagttctcttaattttcctatgtattctttgaacaagtctagttgac |
8232977 |
T |
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| Q |
201 |
cagataatggtattactgactgatta |
226 |
Q |
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| T |
8232976 |
cagatagtgatattgctgactgatta |
8232951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 115 - 186
Target Start/End: Complemental strand, 8253392 - 8253321
Alignment:
| Q |
115 |
actattggccagtatgaagtttgttctttcctcaccaacaatgcctttcaacttcccaatgtattctttgaa |
186 |
Q |
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||||||||| | |||||||||||||| || |||||||| || ||||||| |||| |||| ||||||||||| |
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| T |
8253392 |
actattggctaagatgaagtttgttctatcttcaccaactattcctttcagcttcacaatatattctttgaa |
8253321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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