View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8330_low_9 (Length: 330)
Name: NF8330_low_9
Description: NF8330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8330_low_9 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: scaffold0015 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 177368 - 177676
Alignment:
| Q |
1 |
aggaagttgagaaaaaggtgttgaatcaacacttaccttacccacatgctccatcaaagaaggataaagaaaggcaatacgcaaggtttcttgagctctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
177368 |
aggaagttgagaaaaaggtgttgaatcaacacttaccttacccacatgctccatcaaagaaggataaagaaaagcaatacgcaaggtttcttgagctctt |
177467 |
T |
|
| Q |
101 |
caagaaattgcaaattgacattccattctcggaagccttggagcaaatgccggcgtatgctaagttcatgaaagacatgctttccaagaagaggaaaatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
177468 |
caagaaattgcaaattgacattccattctcggaagccttggagcaaatgccggcgtatgctaagttcatgaaagacatgctttccaagaagaggagaatt |
177567 |
T |
|
| Q |
201 |
catgatgaagaaaccatccaacttgatgctaattgtagtgctatcgtccaacggaggttgccgaagaaagaacaagatccgggaagagtcactctaccgg |
300 |
Q |
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| T |
177568 |
catgatgaagaaaccatccaacttgatgctaattgtagtgctatcatccaacggaggttgccgaagaaagaacaagatccgggaagagtcactctaccgg |
177667 |
T |
|
| Q |
301 |
tagctatag |
309 |
Q |
| |
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||||||||| |
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| T |
177668 |
tagctatag |
177676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 7 - 309
Target Start/End: Original strand, 20170995 - 20171297
Alignment:
| Q |
7 |
ttgagaaaaaggtgttgaatcaacacttaccttacccacatgctccatcaaagaaggataaagaaaggcaatacgcaaggtttcttgagctcttcaagaa |
106 |
Q |
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| T |
20170995 |
ttgagaaaaatgtgttgactcaacactttccctatccacatgctccatcaaagaaagaaaaagaaaggcaatacgcaaggtttcttgaactcttcaagaa |
20171094 |
T |
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| Q |
107 |
attgcaaattgacattccattctcggaagccttggagcaaatgccggcgtatgctaagttcatgaaagacatgctttccaagaagaggaaaattcatgat |
206 |
Q |
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|| ||||||||||||||||| ||||||||||||||||||||| || | ||||| || |||||||||||||| |||| ||||||||||| |||| ||||| |
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| T |
20171095 |
gttacaaattgacattccattttcggaagccttggagcaaatgtcgtcttatgccaaattcatgaaagacattctttacaagaagaggataattaatgat |
20171194 |
T |
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| Q |
207 |
gaagaaaccatccaacttgatgctaattgtagtgctatcgtccaacggaggttgccgaagaaagaacaagatccgggaagagtcactctaccggtagcta |
306 |
Q |
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| T |
20171195 |
gaagaaatcatccaactcgatgcaaattgtagtgccatcattcaacgaaggttgcccaagaaagaacaagatccgggaaaagtcactttactggtagcta |
20171294 |
T |
|
| Q |
307 |
tag |
309 |
Q |
| |
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||| |
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| T |
20171295 |
tag |
20171297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 26 - 250
Target Start/End: Original strand, 26130847 - 26131070
Alignment:
| Q |
26 |
tcaacacttaccttacccacatgctccatcaaagaaggataaagaaaggcaatacgcaaggtttcttgagctcttcaagaaattgcaaattgacattcca |
125 |
Q |
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||||||||| || || |||||||||||| | ||||| | ||||| || |||| |||||||| ||||| | ||||||| |||| |||| | |||||| |
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| T |
26130847 |
tcaacacttgccatatccacatgctccaaccaagaaagc-aaagagcggaaatatgcaaggttccttgatattttcaagagattgaaaatcaatattcca |
26130945 |
T |
|
| Q |
126 |
ttctcggaagccttggagcaaatgccggcgtatgctaagttcatgaaagacatgctttccaagaagaggaaaattcatgatgaagaaaccatccaacttg |
225 |
Q |
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|||||||||||||||||| |||| | | |||||||| ||||| ||| || || |||| ||||||||||| ||||| ||| ||| || |||||| |
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| T |
26130946 |
ttctcggaagccttggagaaaattctgacgtatgcttagttctggaaggaaatcctttataagaagaggaagtacaatgataaagtaacaattcaactta |
26131045 |
T |
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| Q |
226 |
atgctaattgtagtgctatcgtcca |
250 |
Q |
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|||| ||||||||||| ||| |||| |
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| T |
26131046 |
atgcaaattgtagtgcaatcatcca |
26131070 |
T |
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