View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8331_high_2 (Length: 611)
Name: NF8331_high_2
Description: NF8331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8331_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 546; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 18 - 592
Target Start/End: Complemental strand, 52544657 - 52544087
Alignment:
| Q |
18 |
ttaacaaggaaggataatcaagaataaaaacacacacacatacaattggttgataaaattaaaaaagagattatttgagttacccatttgtgcttgcttg |
117 |
Q |
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| T |
52544657 |
ttaacaaggaaggataatcaagaataaaaatacacacacatacaattggttgataaaattaaaaaagagattatttgagttacccatttgtgcttgcttg |
52544558 |
T |
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| Q |
118 |
tgagataacgacgattgaggagaaattggcaaggttccttcaaatcccaatagagcataactagtatgagagaacataattcttggacaaaattatttct |
217 |
Q |
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| T |
52544557 |
tgagataacgacgattgaggagaaattggcaaggttccttcaaatcccaatagagcataactagtatgagagaacataattcttggacaaaattatttct |
52544458 |
T |
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| Q |
218 |
ttgaaaacaaaagaagcatgcacattgcacaaacacacaatttaaaagttttgcacaagcacacaattcaagaagaatcaatatttcaagccataacaga |
317 |
Q |
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| T |
52544457 |
ttgaaaacaaaagaagcatgcacattgcacaaacacacaatttaaaagttttgcacaagcacacaattcaagaagaatcaatatttcaagccataacaga |
52544358 |
T |
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| Q |
318 |
acatattcaaaggcaagaaaagtcaggaacatccaaccatgtaccatgcacgataggcttagttcagcataaaaggctagcattaaaataaaaaactgat |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
52544357 |
acatattcaaaggcaagaaaagtcaggaacatccaaccatgtaccatgcacgataggcttagttcagcataaaaggctagcattaaaatcaaaaactgat |
52544258 |
T |
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| Q |
418 |
gatgaagtatttctacaagcaatcaattgcgtcaagaccaccataaacaatcagagccaactgaatttatacacaaactgtatgatagacacaaagcatt |
517 |
Q |
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| T |
52544257 |
gatgaagtatttctacaagcaatcaattgagtcaagaccaccataaacaatcagagccaactgaatttatacacaaactgtatgatagacacaaagcatt |
52544158 |
T |
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| Q |
518 |
tatcaacaatcctataaacgggacatctagtaaagtgcattgatgaacgatccatcaaatgactaatctgacatc |
592 |
Q |
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| T |
52544157 |
tatcaacaatcctat----gggacatctagtaaagtgcattgatgaacgatccatcaaatgactaatctgacatc |
52544087 |
T |
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