View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8331_high_3 (Length: 499)

Name: NF8331_high_3
Description: NF8331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8331_high_3
NF8331_high_3
[»] chr8 (6 HSPs)
chr8 (210-482)||(7950104-7950372)
chr8 (6-207)||(7949869-7950069)
chr8 (88-183)||(7941033-7941128)
chr8 (88-165)||(7946591-7946669)
chr8 (20-62)||(7946516-7946558)
chr8 (248-280)||(29473355-29473387)
[»] chr3 (6 HSPs)
chr3 (128-182)||(30137353-30137407)
chr3 (128-182)||(30143482-30143536)
chr3 (128-182)||(30146904-30146958)
chr3 (137-183)||(30173902-30173948)
chr3 (137-182)||(30069294-30069339)
chr3 (137-165)||(30154647-30154675)
[»] chr6 (2 HSPs)
chr6 (21-67)||(6803583-6803629)
chr6 (128-180)||(6786183-6786235)


Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-119; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 210 - 482
Target Start/End: Original strand, 7950104 - 7950372
Alignment:
Q  210 ttcagagagtgaaaacctaaaattcctctctaattacatactaaattttgtgacgaggaaattcgagagggtttcattttttatgtcactgatttctgtc 309  Q
    |||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7950104 ttcagagaggaaaaacgtaaaattcctctctaattacatactaaattttgtgacgaggaaattcgagagggtttcattttttatgtcactgatttctgtc 7950203  T
Q  310 gctaatactacttacatatgaaatccttctctagttctctaaaatttaccactaatttattatttcaagtaattgtatgnnnnnnnnncttccagctcta 409  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||          |||||||||||    
T  7950204 gctaatactacttacatatgaaatccttctctaattctctaaaatttaccactaatttattatttcaagtaattgtatgtttttt----ttccagctcta 7950299  T
Q  410 attgtctatgtgtcatttacagcattggttccgacaaagaaggttggagcaacagattgttcgggtgcttgtt 482  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  7950300 attgtctatgtgtcatttacagcattggttccgacgaagaaggttggagcaacagattgttcgggtgcttgtt 7950372  T

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Target: chr8; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 6 - 207
Target Start/End: Original strand, 7949869 - 7950069
Alignment:
Q  6 agtagcagagagcatctataaattattgcatgcaagaatgaactaatgcaacacaaaactaacaacaaattgtagtagattatttctttcgataagaaat 105  Q
    |||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7949869 agtatcagaaagcatctataaat-attgcatgcaagaatgaactaatgcaacacaaaactaacaacaaattgtagtagattatttctttcgataagaaat 7949967  T
Q  106 ggcttatattagatttgctcacttggttgttttcttgcttgccgcattctgtatgtattttaaccatatttctcaccagtagtgcagtacacactgtcat 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  7949968 ggcttatattagatttgctcacttggttgttttcttgcttgccgcattctgtatgtattttaaccatatttctcaccagtagtgcagtatacactgtcat 7950067  T
Q  206 at 207  Q
    ||    
T  7950068 at 7950069  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 88 - 183
Target Start/End: Original strand, 7941033 - 7941128
Alignment:
Q  88 tttctttcgataagaaatggcttatattagatttgctcacttggttgttttcttgcttgccgcattctgtatgtattttaaccatatttctcacca 183  Q
    |||||||||  || ||||||||||| ||||  | ||||| |||||||| |||||||||||| |||| |||||||||||||||| ||||||||||||    
T  7941033 tttctttcggaaaaaaatggcttatcttaggctagctcatttggttgtcttcttgcttgccacattttgtatgtattttaaccttatttctcacca 7941128  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 165
Target Start/End: Original strand, 7946591 - 7946669
Alignment:
Q  88 tttctttcgataagaaa-tggcttatattagatttgctcacttggttgttttcttgcttgccgcattctgtatgtattt 165  Q
    ||||||||||||| ||| |||||||| ||||  | ||||| |||||||| |||||||||||| |||| |||||||||||    
T  7946591 tttctttcgataaaaaaatggcttatcttaggctagctcatttggttgtcttcttgcttgccacattttgtatgtattt 7946669  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 7946516 - 7946558
Alignment:
Q  20 tctataaattattgcatgcaagaatgaactaatgcaacacaaa 62  Q
    ||||||||||||| |||||||||||||||| |||||| |||||    
T  7946516 tctataaattatttcatgcaagaatgaactgatgcaatacaaa 7946558  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 248 - 280
Target Start/End: Complemental strand, 29473387 - 29473355
Alignment:
Q  248 tactaaattttgtgacgaggaaattcgagaggg 280  Q
    ||||||||||||||||||||||||| |||||||    
T  29473387 tactaaattttgtgacgaggaaattagagaggg 29473355  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 128 - 182
Target Start/End: Complemental strand, 30137407 - 30137353
Alignment:
Q  128 ttggttgttttcttgcttgccgcattctgtatgtattttaaccatatttctcacc 182  Q
    |||| ||| ||||||||||||||||||||||||||||| |||||| |||||||||    
T  30137407 ttggctgtcttcttgcttgccgcattctgtatgtatttcaaccatctttctcacc 30137353  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 128 - 182
Target Start/End: Complemental strand, 30143536 - 30143482
Alignment:
Q  128 ttggttgttttcttgcttgccgcattctgtatgtattttaaccatatttctcacc 182  Q
    |||| ||| ||||||||||||||||||||||||||||| |||||| |||||||||    
T  30143536 ttggctgtcttcttgcttgccgcattctgtatgtatttcaaccatctttctcacc 30143482  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 128 - 182
Target Start/End: Complemental strand, 30146958 - 30146904
Alignment:
Q  128 ttggttgttttcttgcttgccgcattctgtatgtattttaaccatatttctcacc 182  Q
    |||| ||| ||||||||||||||||||||||||||||| |||||| |||||||||    
T  30146958 ttggctgtcttcttgcttgccgcattctgtatgtatttcaaccatctttctcacc 30146904  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 30173948 - 30173902
Alignment:
Q  137 ttcttgcttgccgcattctgtatgtattttaaccatatttctcacca 183  Q
    ||||||||||| ||||||||||||||||| || ||| ||||||||||    
T  30173948 ttcttgcttgctgcattctgtatgtatttcaatcatctttctcacca 30173902  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 30069339 - 30069294
Alignment:
Q  137 ttcttgcttgccgcattctgtatgtattttaaccatatttctcacc 182  Q
    ||||||||||||||||||||||||||||| || ||| || ||||||    
T  30069339 ttcttgcttgccgcattctgtatgtatttcaatcatcttcctcacc 30069294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 137 - 165
Target Start/End: Complemental strand, 30154675 - 30154647
Alignment:
Q  137 ttcttgcttgccgcattctgtatgtattt 165  Q
    |||||||||||||||||||||||||||||    
T  30154675 ttcttgcttgccgcattctgtatgtattt 30154647  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 6803629 - 6803583
Alignment:
Q  21 ctataaattattgcatgcaagaatgaactaatgcaacacaaaactaa 67  Q
    ||||| ||| ||||||||||||||||| |||||||||||||||||||    
T  6803629 ctatatattgttgcatgcaagaatgaaataatgcaacacaaaactaa 6803583  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 6786235 - 6786183
Alignment:
Q  128 ttggttgttttcttgcttgccgcattctgtatgtattttaaccatatttctca 180  Q
    |||||||| ||||||||||||  |||||||||||||||||   ||||||||||    
T  6786235 ttggttgtcttcttgcttgccatattctgtatgtattttagatatatttctca 6786183  T

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