View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8331_high_4 (Length: 415)
Name: NF8331_high_4
Description: NF8331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8331_high_4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 19 - 415
Target Start/End: Original strand, 38578028 - 38578424
Alignment:
| Q |
19 |
gtaagatgccttatcattgggatatgctatttaattgacgtctttagacctggtcaccatattcattcagacaaatatatgatgatattagtgatggtaa |
118 |
Q |
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| T |
38578028 |
gtaagatgccttatcattgggatatgctatttaattgacgtctttagaccttgtcaccatattcattcagacaaatatatgatgatattagtgatggtaa |
38578127 |
T |
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| Q |
119 |
atatcaaatattacacgtgggagaaggtttgaaataattagagtgaaaatcacttgacatggaatcatttccctttgcttgcaaaataatttctttaaat |
218 |
Q |
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| T |
38578128 |
atatcaaatattacacgtgggagaaggtttgaaataattagagtgaaaatcacttgacatggaataatttccctttgcttgcaaaataatttctttaaat |
38578227 |
T |
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| Q |
219 |
ttagctagcaactgctgatatatgtctggtcctgtttttgattccttaaaaaaggctatgatcccatataattgtggaacaaactattctaaattacgga |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38578228 |
ttagctagcaactgctgatatatgtctggtcctgtttttgattccttaaaaaaggctatgatcccatataattgtggaacaaactattctaaattacgga |
38578327 |
T |
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| Q |
319 |
tgcatttacgaaattttatgttatggtaaaatgcagacaaaagtggtcgttgcagacaaaattgccgttgtgatacccttatggagatctctaagct |
415 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38578328 |
tgcaattacgaaattttatgttatggtaaaatgcagacaaaagtggtcgttgcagacaaaattgccgttgtgatacccttatggagatctctaagct |
38578424 |
T |
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