View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8331_low_1 (Length: 981)
Name: NF8331_low_1
Description: NF8331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8331_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 136 - 482
Target Start/End: Complemental strand, 32888295 - 32887949
Alignment:
| Q |
136 |
gaacataagagtgtatagtacctgagcagggaaacgaagagccatagagaaaagggtatcagaaccaaggccaacagagtaaaacgcagcagtaccagta |
235 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32888295 |
gaacgtaagagtgtatagtacctgagcagggaaacgaagagccatagagaaaagggtatcagaaccaaggccaacagagtaaaacgcagcagtaccagta |
32888196 |
T |
|
| Q |
236 |
gggttaaagctagcaccacccattgcattaccaatcatggtaaacaagaaaacaagaagaaaaacaagggtagttgttacaatcaaagaagggtaaggga |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32888195 |
gggttaaagctagcaccacccattgcattaccaatcatggtaaacaagaaaacaagaagaaaaacaagggtagttgttacaatcaaagaagggtaaggga |
32888096 |
T |
|
| Q |
336 |
aaccattgtatgaaacgttttgaagatcgagggctttggttatagcacttgaaactatacctaacatggatgaacaaaaaacccacatgaatgttaatac |
435 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32888095 |
aaccattgtatgaaacgttttgaagatcgagggctttggttatagcacttgaaactatacctaacatggatgaacaaaaaacccacatgaatgttaatac |
32887996 |
T |
|
| Q |
436 |
taagtctcctactgctgcttttacagcacccaccaccatcttcaaag |
482 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32887995 |
taagtctcctactgctgcttttacagcacccaccaccatcttcaaag |
32887949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 522 - 962
Target Start/End: Complemental strand, 32887909 - 32887468
Alignment:
| Q |
522 |
aattgaacgaatgagatgagtgttgaagaagaatgggttttaaattggtgttgaatgttgttgacgaggaagaaggtgaaatgcgaatgattcacctaat |
621 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32887909 |
aattgaacgaatgagatgagtgttgaggaagaatgggttttaaattggtgttgaatgttgttgacgaggaagaaggtgaaatgcgaatgattcacctaat |
32887810 |
T |
|
| Q |
622 |
catatgggttggatcatatcatgttatgcgtcagcaatatcaccttcttcttttttaaggcaattattatttttagtctttttaaaggcaattattctaa |
721 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
32887809 |
tctatgggttggatcatatcatgttatgcgtcagcaatatcacctt-tttttttttaaggcaattattttttttagtcttttttaaggcaattattctaa |
32887711 |
T |
|
| Q |
722 |
tatgcaagctctctcnnnnnnnc--tgagttgaactactcactctttttattgatctcttgtccgtatagatagaagattgtttcatattatattgaatt |
819 |
Q |
| |
|
|||||||||||||| | ||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||| ||||| |
|
|
| T |
32887710 |
catgcaagctctctctttttttctttgagttgaactgctcactctttttattgatctcttgtccttatagagagaagattgtttcatataatatagaatt |
32887611 |
T |
|
| Q |
820 |
taattgaaaggtaaataaaatataagattgtttcattaagatatcaaacttagattttactagtaattcatcttttaccgaacattgttaatcatttgac |
919 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||| ||||| |
|
|
| T |
32887610 |
taatcgaaaggtaaataaaatataagattgtttcattaagatatcaaacttagattttactggtaattcatcttttacggaaccttgttaatcacttgac |
32887511 |
T |
|
| Q |
920 |
tctatcgtttgattccctcctcgttgtgttttcatggtttgat |
962 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
32887510 |
tctatggtttgattccctcctcattgtgttttcatggtttgat |
32887468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 155 - 270
Target Start/End: Original strand, 10341586 - 10341701
Alignment:
| Q |
155 |
acctgagcagggaaacgaagagccatagagaaaagggtatcagaaccaaggccaacagagtaaaacgcagcagtaccagtagggttaaagctagcaccac |
254 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||| |||||||||||||| ||| ||| || || | |||| | || ||||||||||| || ||||||| |
|
|
| T |
10341586 |
acctgagcagggaaacgaatagccatagagataagagtatcagaaccaagaccagcagcatagaaagaagcatttcctgtagggttaaaacttgcaccac |
10341685 |
T |
|
| Q |
255 |
ccattgcattaccaat |
270 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
10341686 |
ccaaagcattaccaat |
10341701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University