View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8331_low_12 (Length: 262)
Name: NF8331_low_12
Description: NF8331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8331_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 12 - 246
Target Start/End: Original strand, 48753422 - 48753656
Alignment:
| Q |
12 |
aagcagagatggtcatatgcatgtgctaagcaattgattgagaggttgatttatggagaaggtgatgaaaatgggttggaatttacaattgtgagacctt |
111 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48753422 |
aagcaaagatggtcatatgcatgtgctaagcaattgattgagaggttgatttatggagaaggtgatgaaaatgggttggaatttacaattgtgagacctt |
48753521 |
T |
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| Q |
112 |
ttaattggattggaccgagaatggatttcattcatggtgttgatggtccaagtgagggagttcctagggttcttgcttgcttcagcaacaatcttcttcg |
211 |
Q |
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||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48753522 |
ttaattggattggaccgagaatggatttcattcctagtgttgatggtccaagtgagggagttcctagggttcttgcttgcttcagcaacaatcttcttcg |
48753621 |
T |
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| Q |
212 |
aggagagccgttgaagcttgtggatggtggtgagt |
246 |
Q |
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| T |
48753622 |
aggagagccgttgaagcttgtggatggtggtgagt |
48753656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 12 - 246
Target Start/End: Original strand, 49052057 - 49052291
Alignment:
| Q |
12 |
aagcagagatggtcatatgcatgtgctaagcaattgattgagaggttgatttatggagaaggtgatgaaaatgggttggaatttacaattgtgagacctt |
111 |
Q |
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| T |
49052057 |
aagcaaagatggtcgtatgcatgtgcgaagcagttgattgaaaggttgatttatggtgaaggtgatgaaaaggggttggagtttacaattgtgaggcctt |
49052156 |
T |
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| Q |
112 |
ttaattggattggaccgagaatggatttcattcatggtgttgatggtccaagtgagggagttcctagggttcttgcttgcttcagcaacaatcttcttcg |
211 |
Q |
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| T |
49052157 |
ttaattggattgacccgagaatggatttcattcctggtgttgatggtccaagtgagggagttcctagggttcttgcttgcttcagcaacaatcttcttcg |
49052256 |
T |
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| Q |
212 |
aggagagccgttgaagcttgtggatggtggtgagt |
246 |
Q |
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|||||||||||||||||||| ||||||||||||| |
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| T |
49052257 |
tggagagccgttgaagcttgtagatggtggtgagt |
49052291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 18136633 - 18136426
Alignment:
| Q |
19 |
gatggtcatatgcatgtgctaagcaattgattgagaggttgatttatggagaaggtgatgaaaatgggttggaatttacaattgtgagaccttttaattg |
118 |
Q |
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| T |
18136633 |
gatggtcatatgcatgtgcaaagcaattgattgagaggttgatttatggtgaaggtgatgaaaatgggttggagtttacaattgtgagaccttttaattg |
18136534 |
T |
|
| Q |
119 |
gattggaccgagaatggatttcattcatggtgttgatggtccaagtgagggagttcctagggttcttgcttgcttcagcaacaatcttcttcgaggagag |
218 |
Q |
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| T |
18136533 |
gattggaccaagaatggatctcgttcctagtgttgatggtccaagtgagagagttcctagggttcttgcttgcttcagcaacaatcttcttcgtggagag |
18136434 |
T |
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| Q |
219 |
ccgttgaa |
226 |
Q |
| |
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|||||||| |
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| T |
18136433 |
ccgttgaa |
18136426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 20489087 - 20488960
Alignment:
| Q |
72 |
ggtgatgaaaatgggttggaatttacaattgtgagaccttttaattggattggaccgagaatggatttcattcatggtgttgatggtccaagtgagggag |
171 |
Q |
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|||| |||||| || ||||| || ||||||||||| || ||||||||||| ||||| |||||||| ||||||| ||| |||| || ||||||||||| | |
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| T |
20489087 |
ggtgctgaaaacggcttggagttcacaattgtgaggccctttaattggatcggacctagaatggacttcattcccggtattgacggaccaagtgagggtg |
20488988 |
T |
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| Q |
172 |
ttcctagggttcttgcttgcttcagcaa |
199 |
Q |
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|||| | |||||||| ||||||||||| |
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| T |
20488987 |
ttccccgtgttcttgcatgcttcagcaa |
20488960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 99 - 196
Target Start/End: Original strand, 19389507 - 19389604
Alignment:
| Q |
99 |
attgtgagaccttttaattggattggaccgagaatggatttcattcatggtgttgatggtccaagtgagggagttcctagggttcttgcttgcttcag |
196 |
Q |
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||||||||||||| ||| ||||||||||| |||||||| ||||||| ||| || |||||||||||||| || || || || ||| | ||||||||||| |
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| T |
19389507 |
attgtgagaccttataactggattggaccaagaatggacttcattcctggagtggatggtccaagtgatggtgtcccaagagttttagcttgcttcag |
19389604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 20489236 - 20489181
Alignment:
| Q |
12 |
aagcagagatggtcatatgcatgtgctaagcaattgattgagaggttgatttatgg |
67 |
Q |
| |
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|||||||||||||||||||||||||| ||||| |||||||||||| || ||||||| |
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| T |
20489236 |
aagcagagatggtcatatgcatgtgcaaagcagttgattgagaggctggtttatgg |
20489181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 97
Target Start/End: Complemental strand, 15565689 - 15565604
Alignment:
| Q |
12 |
aagcagagatggtcatatgcatgtgctaagcaattgattgagaggttgatttatggagaaggtgatgaaaatgggttggaatttac |
97 |
Q |
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|||||||||||||| ||| ||||||| | || |||||||| ||||||||||| | ||||||| ||||||| ||||||| ||||| |
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| T |
15565689 |
aagcagagatggtcgtatccatgtgcatatcagttgattgaaaggttgatttacgatgaaggtgctgaaaataggttggagtttac |
15565604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 97
Target Start/End: Complemental strand, 15578336 - 15578251
Alignment:
| Q |
12 |
aagcagagatggtcatatgcatgtgctaagcaattgattgagaggttgatttatggagaaggtgatgaaaatgggttggaatttac |
97 |
Q |
| |
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|||||||||||||| ||| ||||||| | || |||||||| ||||||||||| | ||||||| ||||||| ||||||| ||||| |
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| T |
15578336 |
aagcagagatggtcgtatccatgtgcatatcagttgattgaaaggttgatttacgatgaaggtgctgaaaataggttggagtttac |
15578251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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