View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8331_low_15 (Length: 241)

Name: NF8331_low_15
Description: NF8331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8331_low_15
NF8331_low_15
[»] chr1 (5 HSPs)
chr1 (1-83)||(51459233-51459315)
chr1 (1-91)||(51485596-51485686)
chr1 (113-224)||(51462055-51462166)
chr1 (9-73)||(30200632-30200696)
chr1 (1-73)||(51505713-51505785)
[»] chr5 (2 HSPs)
chr5 (1-79)||(27400053-27400131)
chr5 (4-79)||(20866346-20866421)
[»] scaffold0020 (1 HSPs)
scaffold0020 (4-93)||(134884-134973)


Alignment Details
Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 51459233 - 51459315
Alignment:
Q  1 gacttttattcagaagcttggagatgctgttttcattcccgctggtttgcctcaccaagtcagaaatctgaagataaaattta 83  Q
    |||||||||||||||| | |||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||    
T  51459233 gacttttattcagaagttgggagatgccgttttcattcctgctggtttgcctcaccaagtcagaaatctgaaggtaaagttta 51459315  T

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Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 51485596 - 51485686
Alignment:
Q  1 gacttttattcagaagcttggagatgctgttttcattcccgctggtttgcctcaccaagtcagaaatctgaagataaaatttacatacatg 91  Q
    |||||||||||||||||| |||||||||||||||||||| || ||||  |||||||||||||||||||| ||| |||||| ||||||||||    
T  51485596 gacttttattcagaagctaggagatgctgttttcattcctgccggttgtcctcaccaagtcagaaatctaaaggtaaaatctacatacatg 51485686  T

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Target: chr1; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 113 - 224
Target Start/End: Original strand, 51462055 - 51462166
Alignment:
Q  113 ttggagcgaggaataacagcttaaattagatttaagtctgaaatgatatctgatttattgtgtgttttatctcttatcctttgtacttgtgttctctaaa 212  Q
    |||||||||||||||||||| | ||||||||| |  ||||||  || || ||||||||| |||| |||||||||||||||| || ||||| |||||||||    
T  51462055 ttggagcgaggaataacagcctcaattagattaagatctgaatcgagatatgatttattatgtgctttatctcttatccttggtgcttgtattctctaaa 51462154  T
Q  213 ttttagtagatt 224  Q
    ||||||||||||    
T  51462155 ttttagtagatt 51462166  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 30200696 - 30200632
Alignment:
Q  9 ttcagaagcttggagatgctgttttcattcccgctggtttgcctcaccaagtcagaaatctgaag 73  Q
    |||||||||| |||||||||||||||||||| |||||||  || ||||||||| |||||||||||    
T  30200696 ttcagaagctgggagatgctgttttcattccggctggttgtccccaccaagtccgaaatctgaag 30200632  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 51505713 - 51505785
Alignment:
Q  1 gacttttattcagaagcttggagatgctgttttcattcccgctggtttgcctcaccaagtcagaaatctgaag 73  Q
    ||||||| | |||||||| |||||||||||||||||||| |||||||  || ||||||||| |||||||||||    
T  51505713 gacttttttccagaagctaggagatgctgttttcattccagctggttgtccgcaccaagtccgaaatctgaag 51505785  T

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Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 27400053 - 27400131
Alignment:
Q  1 gacttttattcagaagcttggagatgctgttttcattcccgctggtttgcctcaccaagtcagaaatctgaagataaaa 79  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||| |  || ||||||||| ||||||||||| |||||    
T  27400053 gacttttgttcagaagcttggagatgctgttttcattccagctggctgcccccaccaagtccgaaatctgaaggtaaaa 27400131  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 20866421 - 20866346
Alignment:
Q  4 ttttattcagaagcttggagatgctgttttcattcccgctggtttgcctcaccaagtcagaaatctgaagataaaa 79  Q
    |||| |||||||||| |||||||||||||||||||| |||||||  || || |||||||||||||||||| |||||    
T  20866421 ttttgttcagaagctaggagatgctgttttcattccagctggttgtccacatcaagtcagaaatctgaaggtaaaa 20866346  T

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Target: scaffold0020 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 93
Target Start/End: Complemental strand, 134973 - 134884
Alignment:
Q  4 ttttattcagaagcttggagatgctgttttcattcccgctggtttgcctcaccaagtcagaaatctgaagataaaatttacatacatggt 93  Q
    |||| |||||||||| |||| ||||||||||||||| |||||||  || |||||||| || ||||||||| |||| ||||| ||||||||    
T  134973 ttttgttcagaagctaggagctgctgttttcattccagctggttgtccccaccaagtgaggaatctgaaggtaaattttacgtacatggt 134884  T

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