View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8331_low_2 (Length: 913)

Name: NF8331_low_2
Description: NF8331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8331_low_2
NF8331_low_2
[»] chr8 (10 HSPs)
chr8 (450-866)||(45099359-45099775)
chr8 (173-313)||(45098904-45099044)
chr8 (18-117)||(45098749-45098848)
chr8 (174-243)||(6526184-6526253)
chr8 (268-312)||(39551235-39551279)
chr8 (180-247)||(39049337-39049404)
chr8 (186-247)||(2487952-2488013)
chr8 (183-242)||(7918722-7918781)
chr8 (174-284)||(6950350-6950460)
chr8 (268-313)||(34551119-34551164)
[»] chr5 (9 HSPs)
chr5 (174-312)||(2568658-2568796)
chr5 (174-306)||(37611147-37611279)
chr5 (174-306)||(37787877-37788009)
chr5 (181-310)||(10125657-10125786)
chr5 (174-217)||(10771820-10771863)
chr5 (232-310)||(40205064-40205142)
chr5 (181-242)||(4273316-4273377)
chr5 (182-247)||(12459941-12460006)
chr5 (174-311)||(17258815-17258952)
[»] chr1 (8 HSPs)
chr1 (174-287)||(31517672-31517785)
chr1 (508-675)||(48886172-48886339)
chr1 (187-242)||(4033962-4034017)
chr1 (174-217)||(35017677-35017720)
chr1 (184-243)||(36070250-36070309)
chr1 (174-288)||(1662597-1662711)
chr1 (258-312)||(25005813-25005867)
chr1 (174-284)||(37593616-37593726)
[»] chr6 (4 HSPs)
chr6 (174-290)||(33080510-33080626)
chr6 (174-287)||(2455835-2455948)
chr6 (220-313)||(20368158-20368251)
chr6 (173-217)||(34429645-34429689)
[»] chr2 (6 HSPs)
chr2 (174-274)||(4350728-4350828)
chr2 (174-247)||(787397-787470)
chr2 (175-247)||(13866943-13867015)
chr2 (227-309)||(43065435-43065517)
chr2 (174-247)||(2964741-2964814)
chr2 (174-247)||(28803462-28803535)
[»] chr4 (4 HSPs)
chr4 (175-242)||(18628486-18628553)
chr4 (174-312)||(27721717-27721855)
chr4 (252-313)||(36722679-36722740)
chr4 (174-247)||(42641571-42641644)
[»] chr7 (3 HSPs)
chr7 (189-242)||(30535633-30535686)
chr7 (193-247)||(36537973-36538027)
chr7 (174-247)||(23214920-23214993)
[»] chr3 (3 HSPs)
chr3 (182-247)||(8797752-8797816)
chr3 (268-313)||(40665428-40665473)
chr3 (181-246)||(50211801-50211866)


Alignment Details
Target: chr8 (Bit Score: 417; Significance: 0; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 450 - 866
Target Start/End: Original strand, 45099359 - 45099775
Alignment:
Q  450 cgcgaacaaaggagttccctttagcttcaccagaagcaacaattctgataccatcaggagaccactgaagatcatcgatccttccagaaagaacacgaaa 549  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45099359 cgcgaacaaaggagttccctttagcttcaccagaagcaacaattctgataccatcaggagaccactgaagatcatcgatccttccagaaagaacacgaaa 45099458  T
Q  550 ctccttcttcaaaacgaattcattgcgagttccccagatcctcacggtacctgacacgtcagcagatgcaacccattcaccgttgggtgaaaatcgagcg 649  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45099459 ctccttcttcaaaacgaattcattgcgagttccccagatcctcacggtacctgacacgtcagcagatgcaacccattcaccgttgggtgaaaatcgagcg 45099558  T
Q  650 acggtggcagggtaagcatgttcgccatagacggagacttgaagggggttatggagattcatcatgataaccgatctggcattggtgtaggtgatggtgt 749  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45099559 acggtggcagggtaagcatgttcgccatagacggagacttgaagggggttatggagattcatcatgataaccgatctggcattggtgtaggtgatggtgt 45099658  T
Q  750 tggatttggagtcgccggagatgagaataccacggccacgttctgttgacggcgtacaggcgtaagtctccgtcaactcaaccgcgctcatcttgaaaga 849  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45099659 tggatttggagtcgccggagatgagaataccacggccacgttctgttgacggcgtacaggcgtaagtctccgtcaactcaaccgcgctcatcttgaaaga 45099758  T
Q  850 gagaaaatgcagtgcac 866  Q
    |||||||||||||||||    
T  45099759 gagaaaatgcagtgcac 45099775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 173 - 313
Target Start/End: Original strand, 45098904 - 45099044
Alignment:
Q  173 tttattcgagcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttataacatctagataaactattttgaggttatt 272  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  45098904 tttattcgagcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttatgacatctagataaactattttgaggttatt 45099003  T
Q  273 tttataagctctccaggaaaacctatgaaaacaacttataa 313  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  45099004 tttataagctctccaggaaaacctatgaaaacaacttataa 45099044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 45098749 - 45098848
Alignment:
Q  18 catcaaattcaccaacattagtcccagaatcccacctatccatagcagaaattgatcacagtaaatatcaccaactaaagaactaccatatagagtctga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45098749 catcaaattcaccaacattagtcccagaatcccacctatccatagcagaaattgatcacagtaaatatcaccaactaaagaactaccatatagagtctga 45098848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 243
Target Start/End: Original strand, 6526184 - 6526253
Alignment:
Q  174 ttattcgagcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttata 243  Q
    |||||||||| ||||||||||||||| | |||| ||||||||||  |||||| || ||||||||||||||    
T  6526184 ttattcgagcctatctactggcataagcccttgtgagattgtttgagagaacttaggaaaacaacttata 6526253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 268 - 312
Target Start/End: Original strand, 39551235 - 39551279
Alignment:
Q  268 ttatttttataagctctccaggaaaacctatgaaaacaacttata 312  Q
    ||||||||||||||||||||||||| | |||||||||||||||||    
T  39551235 ttatttttataagctctccaggaaagcttatgaaaacaacttata 39551279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 247
Target Start/End: Complemental strand, 39049404 - 39049337
Alignment:
Q  180 gagcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttataacat 247  Q
    ||||||||||||| ||||||||| ||| ||||||||||  || | | |||||||||||||||||||||    
T  39049404 gagcttatctactagcataaacatttgtgagattgtttgtgaaagcttatgaaaacaacttataacat 39049337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 247
Target Start/End: Original strand, 2487952 - 2488013
Alignment:
Q  186 atctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttataacat 247  Q
    |||||||| ||||| |||||| |||| |||||  |||||| |||||||||||||||||||||    
T  2487952 atctactgacataagcacttgtgagactgtttgggagaacttatgaaaacaacttataacat 2488013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 7918722 - 7918781
Alignment:
Q  183 cttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttat 242  Q
    |||||||||| ||||||||||||| |||| |||||  |||| | ||||||||||||||||    
T  7918722 cttatctactagcataaacacttgtgagactgtttgggagagcttatgaaaacaacttat 7918781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 284
Target Start/End: Complemental strand, 6950460 - 6950350
Alignment:
Q  174 ttattcgagcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttataacatctagataaactattttgaggttattt 273  Q
    ||||| ||| ||||||||||||||||||| ||| ||||||||||  |||| | |||| ||||||| ||| |||| | |||||  | |||| || ||||||    
T  6950460 ttatttgagtttatctactggcataaacatttgtgagattgtttgggagagcttatgtaaacaacctatgacatgtcgataagttgttttcagcttattt 6950361  T
Q  274 ttataagctct 284  Q
      |||||||||    
T  6950360 ccataagctct 6950350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 268 - 313
Target Start/End: Complemental strand, 34551164 - 34551119
Alignment:
Q  268 ttatttttataagctctccaggaaaacctatgaaaacaacttataa 313  Q
    ||||||| ||||||||||||||| ||| || |||||||||||||||    
T  34551164 ttattttcataagctctccaggataacttaagaaaacaacttataa 34551119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 312
Target Start/End: Complemental strand, 2568796 - 2568658
Alignment:
Q  174 ttattcgagcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttataacatctagataaactattttgaggttattt 273  Q
    ||||| |||||||||||||||  ||| ||||||||||| |||||   ||||| |||||||||| ||||| |||| |  ||||  |||||| || ||||||    
T  2568796 ttatttgagcttatctactggtgtaagcacttgagagactgtttagaagaacttatgaaaacagcttatgacatattcataagttatttttagcttattt 2568697  T
Q  274 ttataagctctccaggaaaacctatgaaaacaacttata 312  Q
    | || ||||||||| || | | |||||||||||||||||    
T  2568696 tcattagctctccatgatagcttatgaaaacaacttata 2568658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 306
Target Start/End: Original strand, 37611147 - 37611279
Alignment:
Q  174 ttattcgagcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttataacatctagataaactattttgaggttattt 273  Q
    ||||| || |||||||||||||| ||  ||||| ||||||||||  |||| | |||||||||||||| | |||| |  |||| || |||| |||||||||    
T  37611147 ttatttgaacttatctactggcacaagtacttgtgagattgtttgagagagcttatgaaaacaacttgtgacatgttcataagctgttttcaggttattt 37611246  T
Q  274 ttataagctctccaggaaaacctatgaaaacaa 306  Q
      |||||||||||| || | | |||||||||||    
T  37611247 ccataagctctccaagatagcttatgaaaacaa 37611279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 306
Target Start/End: Original strand, 37787877 - 37788009
Alignment:
Q  174 ttattcgagcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttataacatctagataaactattttgaggttattt 273  Q
    ||||| || |||||||||||||| ||  ||||| ||||||||||  |||| | |||||||||||||| | |||| |  |||| || |||| |||||||||    
T  37787877 ttatttgaacttatctactggcacaagtacttgtgagattgtttgagagagcttatgaaaacaacttgtgacatgttcataagctgttttcaggttattt 37787976  T
Q  274 ttataagctctccaggaaaacctatgaaaacaa 306  Q
      |||||||||||| || | | |||||||||||    
T  37787977 ccataagctctccaagatagcttatgaaaacaa 37788009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 310
Target Start/End: Original strand, 10125657 - 10125786
Alignment:
Q  181 agcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttataacatctagataaactattttgaggttatttttataag 280  Q
    ||||||||||||| ||| | |||||| || ||||| |  |||||| |||| ||||||||||| |||| | |||||  | |||| || ||||||| |||||    
T  10125657 agcttatctactgacatgagcacttgtgacattgtctgagagaacttatgtaaacaacttatgacatgttgataaggtgttttcagcttattttcataag 10125756  T
Q  281 ctctccaggaaaacctatgaaaacaactta 310  Q
    ||||||| |  ||| |||||||| ||||||    
T  10125757 ctctccatggtaacttatgaaaataactta 10125786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 10771820 - 10771863
Alignment:
Q  174 ttattcgagcttatctactggcataaacacttgagagattgttt 217  Q
    ||||| |||||||||||||||||||| |||||| ||||||||||    
T  10771820 ttatttgagcttatctactggcataagcacttgtgagattgttt 10771863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 232 - 310
Target Start/End: Original strand, 40205064 - 40205142
Alignment:
Q  232 aaacaacttataacatctagataaactattttgaggttatttttataagctctccaggaaaacctatgaaaacaactta 310  Q
    ||||| |||||||||| |  |||| || |||| || |||||| |||||||||||||||| | | |||||||||||||||    
T  40205064 aaacagcttataacatgtccataatctgttttcagcttatttctataagctctccaggatagcttatgaaaacaactta 40205142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 4273316 - 4273377
Alignment:
Q  181 agcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttat 242  Q
    ||||| |||| ||||||||||| ||| ||||||||||  ||||||||||| ||||| |||||    
T  4273316 agcttgtctattggcataaacatttgtgagattgtttgagagaacctatggaaacagcttat 4273377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 12459941 - 12460006
Alignment:
Q  182 gcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttataacat 247  Q
    |||||||| ||| ||||| ||| || |||| |||||  ||||||||||||||||||||||| ||||    
T  12459941 gcttatctgctgacataagcacctgtgagactgtttgggagaacctatgaaaacaacttatgacat 12460006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 311
Target Start/End: Original strand, 17258815 - 17258952
Alignment:
Q  174 ttattcgagcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttataacatctagataaactattttgaggttattt 273  Q
    ||||| ||||||||| |||  ||||| |||||| || ||| |||  ||||||||||||||| | ||||| |||| |  |||| || |||| || ||||||    
T  17258815 ttatttgagcttatcaactaacataagcacttgtgacattctttgggagaacctatgaaaatagcttatgacatgttcataagctgttttcagcttattt 17258914  T
Q  274 ttataagctctccaggaaaacctatgaaaacaacttat 311  Q
    | ||||||||| ||||| |   |||||||||| |||||    
T  17258915 tcataagctcttcaggatagtttatgaaaacagcttat 17258952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000006; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 287
Target Start/End: Original strand, 31517672 - 31517785
Alignment:
Q  174 ttattcgagcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttataacatctagataaactattttgaggttattt 273  Q
    ||||| |||||||| ||||||||||| |||||| |||| |||||  |||||| ||| ||||||||| || |||| |  |||| || |||| || ||||||    
T  31517672 ttatttgagcttatttactggcataagcacttgtgagactgtttgggagaacttatcaaaacaactcatgacatgttcataagctgttttcagcttattt 31517771  T
Q  274 ttataagctctcca 287  Q
    | ||||||||||||    
T  31517772 tcataagctctcca 31517785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 508 - 675
Target Start/End: Complemental strand, 48886339 - 48886172
Alignment:
Q  508 agaccactgaagatcatcgatccttccagaaagaacacgaaactccttcttcaaaacgaattcattgcgagttccccagatcctcacggtacctgacacg 607  Q
    |||||||||||||||||||||||  ||||| ||||||||||| || ||||| | |||  | |||||  |||||||||| || |  | |||||| || ||     
T  48886339 agaccactgaagatcatcgatccgaccagatagaacacgaaattcgttcttgagaacataatcattatgagttccccaaatgcgaatggtaccggaaaca 48886240  T
Q  608 tcagcagatgcaacccattcaccgttgggtgaaaatcgagcgacggtggcagggtaagcatgttcgcc 675  Q
    ||||| || || | |||||| |||||||| ||  | || ||||||||| |||| |||| |||||||||    
T  48886239 tcagcggacgcgatccattcgccgttgggggagtaacgtgcgacggtgacaggataagaatgttcgcc 48886172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 242
Target Start/End: Original strand, 4033962 - 4034017
Alignment:
Q  187 tctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttat 242  Q
    |||||||||||||||||||| ||||||||||  |||| | |||||||| |||||||    
T  4033962 tctactggcataaacacttgtgagattgtttgagagagcttatgaaaataacttat 4034017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 35017720 - 35017677
Alignment:
Q  174 ttattcgagcttatctactggcataaacacttgagagattgttt 217  Q
    ||||| ||||||||||| ||||||||||||||| ||||||||||    
T  35017720 ttatttgagcttatctattggcataaacacttgtgagattgttt 35017677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 36070309 - 36070250
Alignment:
Q  184 ttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttata 243  Q
    |||||| ||||||||| |||||| |||| |||||  |||||| |||||||||||||||||    
T  36070309 ttatcttctggcataagcacttgtgagactgtttaggagaacttatgaaaacaacttata 36070250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 288
Target Start/End: Complemental strand, 1662711 - 1662597
Alignment:
Q  174 ttattcgagcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttataacatctagataaactattttgaggttattt 273  Q
    ||||| ||||||||||||| ||||||  || || |||| | ||| ||||| | || | ||||||||||| |||| |  ||||| |||||| || ||||||    
T  1662711 ttatttgagcttatctactagcataagtacatgcgagactatttgcgagagcttacggaaacaacttatgacatgtccataaaatatttttagtttattt 1662612  T
Q  274 ttataagctctccag 288  Q
    | |||||||||||||    
T  1662611 tcataagctctccag 1662597  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 258 - 312
Target Start/End: Original strand, 25005813 - 25005867
Alignment:
Q  258 tattttgaggttatttttataagctctccaggaaaacctatgaaaacaacttata 312  Q
    |||||| || || |||||||||||||||||||| | | |||||||||||||||||    
T  25005813 tattttaagcttgtttttataagctctccaggatagcttatgaaaacaacttata 25005867  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 284
Target Start/End: Original strand, 37593616 - 37593726
Alignment:
Q  174 ttattcgagcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttataacatctagataaactattttgaggttattt 273  Q
    ||||| |||||||| ||||||||||||||||||  ||| |||||  || |||  ||||| ||||||||| |||| |  |||| || |||| || ||||||    
T  37593616 ttatttgagcttatatactggcataaacacttgttagactgtttgggaaaactaatgaacacaacttatgacatgttcataagctgttttcagcttattt 37593715  T
Q  274 ttataagctct 284  Q
    | |||||||||    
T  37593716 tcataagctct 37593726  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 290
Target Start/End: Original strand, 33080510 - 33080626
Alignment:
Q  174 ttattcgagcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttataacatctagataaactattttgaggttattt 273  Q
    ||||| |||||||| ||||||||||| |||||| ||||||||||   ||||  | ||||| |||||||| |||| |  ||||  |||||| || ||||||    
T  33080510 ttatttgagcttatttactggcataagcacttgtgagattgtttaatagaatttctgaaaccaacttatgacatgtttataagttattttcagtttattt 33080609  T
Q  274 ttataagctctccagga 290  Q
     ||||||||||||||||    
T  33080610 ctataagctctccagga 33080626  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 287
Target Start/End: Complemental strand, 2455948 - 2455835
Alignment:
Q  174 ttattcgagcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttataacatctagataaactattttgaggttattt 273  Q
    ||||| |||||||||||| ||||||| |||||| ||||||||||   ||| | |||| ||||||||||| ||||    |||||||||||| |  ||||||    
T  2455948 ttatttgagcttatctaccggcataagcacttgcgagattgtttagaagagcttatggaaacaacttatgacatgcccataaactattttcaacttattt 2455849  T
Q  274 ttataagctctcca 287  Q
      ||||||||||||    
T  2455848 ccataagctctcca 2455835  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 220 - 313
Target Start/End: Original strand, 20368158 - 20368251
Alignment:
Q  220 gagaacctatgaaaacaacttataacatctagataaactattttgaggttatttttataagctctccaggaaaacctatgaaaacaacttataa 313  Q
    |||||| |||||||||||||||| |||| |  |||| ||| ||| |  ||||||| ||||| |||||| |||| | ||||||||||||||||||    
T  20368158 gagaacttatgaaaacaacttatgacatgttcataagctagtttcaacttattttcataagttctccaagaaagcttatgaaaacaacttataa 20368251  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 34429645 - 34429689
Alignment:
Q  173 tttattcgagcttatctactggcataaacacttgagagattgttt 217  Q
    |||||| ||||||||||||| |||||||||||||||| |||||||    
T  34429645 tttatttgagcttatctactagcataaacacttgagatattgttt 34429689  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 274
Target Start/End: Complemental strand, 4350828 - 4350728
Alignment:
Q  174 ttattcgagcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttataacatctagataaactattttgaggttattt 273  Q
    ||||| |||||| ||||||| ||||| ||||| |||||||||||  |||||| |||||||||| ||||| |||| |  |||||||  ||| |||||||||    
T  4350828 ttatttgagcttctctactgacataagcacttaagagattgtttgagagaacttatgaaaacagcttatgacatgttcataaactgattttaggttattt 4350729  T
Q  274 t 274  Q
    |    
T  4350728 t 4350728  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 787470 - 787397
Alignment:
Q  174 ttattcgagcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttataacat 247  Q
    |||||||||| ||||||||||||||| |||||| || | |||||  |||||| |||||||||| ||||| ||||    
T  787470 ttattcgagcatatctactggcataagcacttgtgacactgtttgtgagaacttatgaaaacagcttatgacat 787397  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 13867015 - 13866943
Alignment:
Q  175 tattcgagcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttataacat 247  Q
    |||| |||||||||||||| |||||||||||| |||| |||||  |||||| || ||||||||| ||| ||||    
T  13867015 tatttgagcttatctactgccataaacacttgtgagactgtttgagagaacttaagaaaacaacctatgacat 13866943  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 227 - 309
Target Start/End: Original strand, 43065435 - 43065517
Alignment:
Q  227 tatgaaaacaacttataacatctagataaactattttgaggttatttttataagctctccaggaaaacctatgaaaacaactt 309  Q
    |||||||||||||||| |||| |  ||||| | |||| || ||||||  |||||||||||| || ||| ||||||||||||||    
T  43065435 tatgaaaacaacttatgacatgtccataaattgttttcagcttatttcaataagctctccacgataacttatgaaaacaactt 43065517  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 2964741 - 2964814
Alignment:
Q  174 ttattcgagcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttataacat 247  Q
    ||||| || ||||||||| |||||||||||||| |||| |||||  | |||| |||||||||| ||||| ||||    
T  2964741 ttatttgaacttatctaccggcataaacacttgcgagaatgtttgagtgaacttatgaaaacagcttatgacat 2964814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 28803462 - 28803535
Alignment:
Q  174 ttattcgagcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttataacat 247  Q
    ||||| |||||||||||| ||||||| ||| || |||| |||||  |||||| |||| ||||||||||| ||||    
T  28803462 ttatttgagcttatctaccggcataagcacatgtgagactgtttgagagaacatatggaaacaacttatgacat 28803535  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 18628486 - 18628553
Alignment:
Q  175 tattcgagcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttat 242  Q
    |||| |||||||||||||| |||||||||||| |||| |||||  |||| | ||||||||||||||||    
T  18628486 tatttgagcttatctactgacataaacacttgtgagactgtttgggagagcttatgaaaacaacttat 18628553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 312
Target Start/End: Complemental strand, 27721855 - 27721717
Alignment:
Q  174 ttattcgagcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttataacatctagataaactattttgaggttattt 273  Q
    ||||| ||||| ||| | ||| || |||||||| ||||||||||  |||| | ||| ||||| |||||| |||| |  |||| || |||| || ||||||    
T  27721855 ttatttgagctaatcaagtggtattaacacttgtgagattgtttaagagagcttataaaaactacttatgacatatccataagctgttttcagcttattt 27721756  T
Q  274 ttataagctctccaggaaaacctatgaaaacaacttata 312  Q
    |   ||||||||||||| ||| |||||||||| ||||||    
T  27721755 tcgcaagctctccaggataacttatgaaaacagcttata 27721717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 252 - 313
Target Start/End: Original strand, 36722679 - 36722740
Alignment:
Q  252 ataaactattttgaggttatttttataagctctccaggaaaacctatgaaaacaacttataa 313  Q
    |||| ||||||| || ||||||| ||||||||| ||||| ||| ||| ||||||||||||||    
T  36722679 ataatctattttaagcttattttcataagctcttcaggataacttatcaaaacaacttataa 36722740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 42641571 - 42641644
Alignment:
Q  174 ttattcgagcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttataacat 247  Q
    ||||| |||||||||||||||| | |||||||| || | ||||| | ||||| |||||||||| ||||| ||||    
T  42641571 ttatttgagcttatctactggcgtgaacacttgtgatactgttttcaagaacttatgaaaacaccttatgacat 42641644  T

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Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 242
Target Start/End: Complemental strand, 30535686 - 30535633
Alignment:
Q  189 tactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttat 242  Q
    ||||| ||||||||||||||||| |||||  |||||| ||||||||||||||||    
T  30535686 tactgacataaacacttgagagactgttttggagaacttatgaaaacaacttat 30535633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 36538027 - 36537973
Alignment:
Q  193 ggcataaacacttgagagattgtttccgagaacctatgaaaacaacttataacat 247  Q
    |||||||||||||| ||||||||||  |||||| |||| ||||||||||| ||||    
T  36538027 ggcataaacacttgtgagattgtttgagagaacttatggaaacaacttatgacat 36537973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 23214993 - 23214920
Alignment:
Q  174 ttattcgagcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttataacat 247  Q
    ||||| || |||||||||| ||||||||||||  |||| |||||  |||||  |||||||||||||||| ||||    
T  23214993 ttatttgaccttatctactagcataaacacttatgagactgtttgagagaatttatgaaaacaacttatgacat 23214920  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 8797816 - 8797752
Alignment:
Q  182 gcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttataacat 247  Q
    ||||||||||||||||||| ||||| || | |||||  ||||||||||||||||| | ||||||||    
T  8797816 gcttatctactggcataaatacttgtgatactgttt-ggagaacctatgaaaacatcgtataacat 8797752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 268 - 313
Target Start/End: Complemental strand, 40665473 - 40665428
Alignment:
Q  268 ttatttttataagctctccaggaaaacctatgaaaacaacttataa 313  Q
    |||||||||||||||||||| || ||| |||||||||| |||||||    
T  40665473 ttatttttataagctctccaagataacttatgaaaacatcttataa 40665428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 246
Target Start/End: Complemental strand, 50211866 - 50211801
Alignment:
Q  181 agcttatctactggcataaacacttgagagattgtttccgagaacctatgaaaacaacttataaca 246  Q
    ||||||||||||  ||||| ||||||  ||| |||||  |||||| ||||||||||||||||||||    
T  50211866 agcttatctactaacataagcacttgtaagactgtttgagagaacttatgaaaacaacttataaca 50211801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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