View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8331_low_3 (Length: 705)
Name: NF8331_low_3
Description: NF8331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8331_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 659; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 659; E-Value: 0
Query Start/End: Original strand, 10 - 688
Target Start/End: Original strand, 51405001 - 51405679
Alignment:
| Q |
10 |
gataatactccttccattccataaacaccagcgtatcgatggaacgatggagtcattaggacattcatttcatgtaatgaatgagctcgtgttgagtcat |
109 |
Q |
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| T |
51405001 |
gataatactccttccattccataaacaccagcgtatagatggaacgatggagtcattaggacattcatttcatgtaatgaatgagcttgtgttgagtcat |
51405100 |
T |
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| Q |
110 |
gcaccttgttctgttggaattttgattgatcgcggtctcggaggaacaagtcaagttcaagcaagtgaagtttcctttaaggttgctgtaatcttcttcg |
209 |
Q |
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| T |
51405101 |
gcaccttgttctgttggaattttgattgatcgcggtctcggaggaacaagtcaagttcaagcaagtgaagtttcctttaaggttgttgtaatcttcttcg |
51405200 |
T |
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| Q |
210 |
gaggacgcgacgatcatgaagcacttgcttatggtatgagaatggcagaacatccaggaattttactccatgttgttaagttcatttctccacctggaat |
309 |
Q |
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| T |
51405201 |
gaggacgcgacgatcatgaagcacttgcttatggtatgagaatggcagaacatccaggaattttactccatgttgttaagttcatttctccacctggaat |
51405300 |
T |
|
| Q |
310 |
gacattgtcttttggtgctaaattggttggtgtagcacaagataagagcaaaacagttgtgattgatgatattgaaggtagccatgatggtagtaaaaat |
409 |
Q |
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| T |
51405301 |
gacattgtcttttggtgctaaattggttggtgtagcacaagataagagcaaaacagttgtgattgatgatattgaaggtagccatgatggtagtaaaaat |
51405400 |
T |
|
| Q |
410 |
caagatgaacaactctggagtgaattccatagtgcaaagagcatgaatgaagagtcaattaagtatgaggaaaggatggttgaaagtaaaaataatattg |
509 |
Q |
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| T |
51405401 |
caagatgaacaactctggagtgaattccatagtgcaaagagcatgaatgaagagtcaattaagtatgaggaaaggatggttgaaagtaaaaatgatattg |
51405500 |
T |
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| Q |
510 |
agacagaattgaaggaattgagtaagagtaatttgatattggttggtagaatgccaccagttgcaccattggttagtaacagtgattctgctgaacttgg |
609 |
Q |
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| T |
51405501 |
agacagcattgaaggaattgagtaagagtaatttgatattggttggtagaatgccaccagttgcaccattggttagtaacagtgattctgctgaacttgg |
51405600 |
T |
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| Q |
610 |
acctattggaagttatatggcttcttctagtttctcaacttctgcatcaatcttggtgattcaacaatataattcaact |
688 |
Q |
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| T |
51405601 |
acctattggaagttatatggcttcttctagtttctcaacttctgcatcaatcttggtgattcaacaatataattcaact |
51405679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 47 - 277
Target Start/End: Complemental strand, 29981660 - 29981430
Alignment:
| Q |
47 |
gatggaacgatggagtcattaggacattcatttcatgtaatgaatgagctcgtgttgagtcatgcaccttgttctgttggaattttgattgatcgcggtc |
146 |
Q |
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| T |
29981660 |
gatggaactatggaatcattagggcactcgtttcgcgtaatgaatggacttgtacttagccatgctccttgctcggttggaattttggttgatcgtggcc |
29981561 |
T |
|
| Q |
147 |
tcggaggaacaagtcaagttcaagcaagtgaagtttcctttaaggttgctgtaatcttcttcggaggacgcgacgatcatgaagcacttgcttatggtat |
246 |
Q |
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| T |
29981560 |
ttggagggacaactcaagtccatgctagtgatgtttcttacaatgttgttgtagctttctttggaggatgtgatgatcgagaagcacttgcgtacggtat |
29981461 |
T |
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| Q |
247 |
gagaatggcagaacatccaggaattttactc |
277 |
Q |
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| T |
29981460 |
gagaatagcagaacatcctggaatttcactc |
29981430 |
T |
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