View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8331_low_7 (Length: 403)
Name: NF8331_low_7
Description: NF8331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8331_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 267
Target Start/End: Original strand, 33780706 - 33780955
Alignment:
| Q |
19 |
aaaattgcctgagaagatactctaccacaaatatttatgtcctcttttaagaatcttattannnnnnngggttctttaaagaatcttatatatttgttaa |
118 |
Q |
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| T |
33780706 |
aaaattgcctgagaagatactctaccacaaatatttatgtcctcttttaagaatcttattatttttttgggttctttaaagaatcttatatatttgttaa |
33780805 |
T |
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| Q |
119 |
aaagaagacagtataaaattttgttgctgtcataacgaagttcaatggaaatttctcaaaaataatatttcaaaaattttcattttataaataaagtatt |
218 |
Q |
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| T |
33780806 |
aaagaagacagtataagattttgttgctgtcataacgaagttcaatggaaatttctcaaaaataatttttcaaaaattttcattttataaataacgtatt |
33780905 |
T |
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| Q |
219 |
tatcaacagcataaaatatgcctct-aaaaaactatagaatgtgtttaaa |
267 |
Q |
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| T |
33780906 |
tatcaacagcataaaatatgtctctaaaaaaactatagaatgtgtttaaa |
33780955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 305 - 373
Target Start/End: Original strand, 33780956 - 33781024
Alignment:
| Q |
305 |
acatgtatatctataaatcacgtactcgacttaacgtagtatacccgtaagcccatttgtgagtataat |
373 |
Q |
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| T |
33780956 |
acatgtatatctataaatcacatactcgacttaacgtagtatacccgtaggcccatttgtgagtataat |
33781024 |
T |
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