View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8331_low_8 (Length: 390)
Name: NF8331_low_8
Description: NF8331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8331_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 11 - 311
Target Start/End: Complemental strand, 29052370 - 29052070
Alignment:
| Q |
11 |
gagtgagaagaatgtggaagaaagcatttttgatatttgcattatttttgttaaagaagaataagtgaatgagtggtgcatggagcttcttggggtattg |
110 |
Q |
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| T |
29052370 |
gagtgaaaagaatgtggaagaaagcatttttgatatttgcattatttttgttaaagaagaataagtgaatgagtggtgcatggagcttcttggggtattg |
29052271 |
T |
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| Q |
111 |
taatgttgttaatctttatcaaccatatatttcatattccatcatagcaacaaaaatagttgaaattgatgtttttatatggttgaaattttggaaatat |
210 |
Q |
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| T |
29052270 |
taatgttgttaatctttatcaaccatatatttcatattccatcatagcaacaaaaatagttgaaattgatgtttttatatggttgaaattttggaaatat |
29052171 |
T |
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| Q |
211 |
gaaaaattgttacataacattatctagagataaaagagtacgacattttgtgtatatgtgagttacacgtgtatggattggcttgctttgttgattccat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29052170 |
gaaaaattgttacataacattatctagagataaaagagtacgacattttgtgtatatgtgagttacacgtgtatggattggcttgctttgttgattccat |
29052071 |
T |
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| Q |
311 |
g |
311 |
Q |
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| T |
29052070 |
g |
29052070 |
T |
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