View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8331_low_9 (Length: 368)
Name: NF8331_low_9
Description: NF8331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8331_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 42 - 347
Target Start/End: Complemental strand, 26217187 - 26216882
Alignment:
| Q |
42 |
tttcatagagaagatggtttccttgaattcttcaaataggaaagcagcaaatagaaactcattatccatactagtgaatagtgatagatggattaatggc |
141 |
Q |
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| T |
26217187 |
tttcatagagaagatggtttccttgaattcttcaaataggaaagcggcaaatagaaactcattatccatactagtgaatagtgttagatggattaatggt |
26217088 |
T |
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| Q |
142 |
attaagaatcgcctcactggagctattctgcttttaaaaaagttctaaaaaataatcacaagccatggaagtcattccgtcccacgttctacatattgtg |
241 |
Q |
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| T |
26217087 |
attaagaatcgcctcactggtgctattctgcttctaaaaaagttctaaaaaataatcacaagccatggaagtcattccgtcccgcgttctacatattgtg |
26216988 |
T |
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| Q |
242 |
ccatcttcatctctaaggctagttattcggttagccttctttctagttgtagctgcaacatgaaagaatttgttgtttaatctccatccttataccataa |
341 |
Q |
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| T |
26216987 |
ccatcttcatctctaaggctagttattcggttagccttctttctagttgtagctgcaacatgaaagaatttgttgtttaatctccatccttataccataa |
26216888 |
T |
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| Q |
342 |
tgcttt |
347 |
Q |
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|||||| |
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| T |
26216887 |
tgcttt |
26216882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 26217290 - 26217246
Alignment:
| Q |
1 |
ttcaaagtgcaacccgcagtaaatatatcatgaccacaatttttc |
45 |
Q |
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| T |
26217290 |
ttcaaagtgcaacccgcagtaaatatatgatgaccacaatttttc |
26217246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 16322611 - 16322575
Alignment:
| Q |
276 |
ccttctttctagttgtagctgcaacatgaaagaattt |
312 |
Q |
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| T |
16322611 |
ccttctttctagatatagctgcaacatgaaagaattt |
16322575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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