View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8332_high_1 (Length: 315)
Name: NF8332_high_1
Description: NF8332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8332_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 21 - 298
Target Start/End: Complemental strand, 17430111 - 17429837
Alignment:
| Q |
21 |
aacacaattgcaaccacaatacaaaata-catgataaatcatctacaacattgtattactaatggcaacaaatcttcaactgaagtgtttactgattcaa |
119 |
Q |
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| T |
17430111 |
aacacaattgcaaccacaatataatatatcatgataaaccatctacaacattgtattactaatggcaacaaatcttcacctgaagtgtttacagatacaa |
17430012 |
T |
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| Q |
120 |
ctaatccttacataaccaaaatcaaaatactaatcaattaaaagcaataaatcatgaatgaacatatttaagaaggaaaacaagctttactaattccaac |
219 |
Q |
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| T |
17430011 |
ctaatccttacattaccaaaatcaaaatactaa-caattaatagcaataaatcatgaattaacatattaaag---gaaaacaagctttactaattccaac |
17429916 |
T |
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| Q |
220 |
tatacacaaatcaaaacaaacttcacttcaaaatatattcctcagatactagaaaatcattcattacaaacttgcttgc |
298 |
Q |
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| T |
17429915 |
tatacacaattcaaaacaaacttcacttcaaaaaatattcctcagacactagaaaatcattcattacaaacttgcttgc |
17429837 |
T |
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