View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8332_low_3 (Length: 300)
Name: NF8332_low_3
Description: NF8332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8332_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 113 - 281
Target Start/End: Original strand, 17468273 - 17468441
Alignment:
| Q |
113 |
tagaatgtgggcctatgttcaatcttcttgacaattcatctggatgtttacattgcaaatttctacatatgaaacaagagttcagtactgatgaagagaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17468273 |
tagaatgtgggcctatgttcaatcttcttgacaattcatctggatgtttacattgcaaatttctacatatgaaacaagagttcagtactgatgaagagaa |
17468372 |
T |
|
| Q |
213 |
gttgacagcctgcgccgtcaaactggaagagtgagtccacaccacggacaacaatctattggacaagaa |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17468373 |
gttgacagcctgcgccgtcaaactggaagagtgagtccacaccacggacaacaatctattggacaagaa |
17468441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 6672343 - 6672388
Alignment:
| Q |
17 |
tgcaggttaggaagattgtgaaatgaagacatggctaaaatttgag |
62 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
6672343 |
tgcaggtttggaagattgtgaaatgaagatatggcaaaaatttgag |
6672388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 8e-24; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 17 - 179
Target Start/End: Complemental strand, 50831792 - 50831630
Alignment:
| Q |
17 |
tgcaggttaggaagattgtgaaatgaagacatggctaaaatttgaggggatgtt-tttaacgggtcagcacctattgttttaattgatagcagca-aata |
114 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||| |||||||||||||||||||| || ||| ||||| | |||| | ||||| ||||| |||| | || |
|
|
| T |
50831792 |
tgcaggtttggaagattgtgaaatgaagatatgactaaaatttgaggggatgttattcaacaggtcatccccta-tattttagttgattgcaggacgtta |
50831694 |
T |
|
| Q |
115 |
gaatgtgggcctatgttcaatcttcttgacaattcatctggatgtttacattgcaaatttctaca |
179 |
Q |
| |
|
|||| ||| ||||||||||| |||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
50831693 |
aaatgcgggactatgttcaatattctatacaattcatctggat-tttacattgcaaatttctaca |
50831630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 17 - 179
Target Start/End: Original strand, 50844061 - 50844223
Alignment:
| Q |
17 |
tgcaggttaggaagattgtgaaatgaagacatggctaaaatttgaggggatgtt-tttaacgggtcagcacctattgttttaattgatagcagca-aata |
114 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||| |||||||||||||||||||| || ||| ||||| | |||| | ||||| ||||| |||| | || |
|
|
| T |
50844061 |
tgcaggtttggaagattgtgaaatgaagatatgactaaaatttgaggggatgttattcaacaggtcatccccta-tattttagttgattgcaggacgtta |
50844159 |
T |
|
| Q |
115 |
gaatgtgggcctatgttcaatcttcttgacaattcatctggatgtttacattgcaaatttctaca |
179 |
Q |
| |
|
|||| ||| ||||||||||| |||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
50844160 |
aaatgcgggactatgttcaatattctatacaattcatctggat-tttacattgcaaatttctaca |
50844223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 178
Target Start/End: Complemental strand, 5574693 - 5574541
Alignment:
| Q |
26 |
ggaagattgtgaaatgaagacatggctaaaatttgaggggatgtt-tttaacgggtcagcacctattgttttaattgatagcagcaaatagaatgtgggc |
124 |
Q |
| |
|
|||||||||||||||| | | |||| ||||||||||||||||||| || ||||||||| |||||||| ||||| ||||| | |||| || |||| ||| |
|
|
| T |
5574693 |
ggaagattgtgaaatgcatatatggttaaaatttgaggggatgttattcaacgggtcatcacctattattttagttgatcgtagcacgtaaaatgcggga |
5574594 |
T |
|
| Q |
125 |
ctatgttcaatcttcttgacaattcatctggatgtttacattgcaaatttctac |
178 |
Q |
| |
|
|||||||||||||||| || ||||| ||||| |||||||| |||||| |||| |
|
|
| T |
5574593 |
ctatgttcaatcttctatacggttcatttggat-tttacattccaaattactac |
5574541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 42318990 - 42319034
Alignment:
| Q |
17 |
tgcaggttaggaagattgtgaaatgaagacatggctaaaatttga |
61 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
42318990 |
tgcaggtttggaagattgtgaaatgaagatatggctaaaatttga |
42319034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 45240825 - 45240780
Alignment:
| Q |
17 |
tgcaggttaggaagattgtgaaatgaagacatggctaaaatttgag |
62 |
Q |
| |
|
|||||||| |||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
45240825 |
tgcaggtttggaagattgtgagatgaagatatggctaaaatttgag |
45240780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 170
Target Start/End: Complemental strand, 45240774 - 45240690
Alignment:
| Q |
85 |
acctattgttttaattgatagcagcaaatagaatgtgggcctatgttcaatcttcttgacaattcatctggatgtttacattgcaa |
170 |
Q |
| |
|
||||| ||||||| ||||||| |||| || |||| ||| |||||||||||||| | ||||||||||||||| |||||| ||||| |
|
|
| T |
45240774 |
acctaatgttttagttgatagtagcatgtaaaatgcgggactatgttcaatcttttatacaattcatctggat-tttacaatgcaa |
45240690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 31662126 - 31662082
Alignment:
| Q |
17 |
tgcaggttaggaagattgtgaaatgaagacatggctaaaatttga |
61 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
31662126 |
tgcaggtttggaagattgtgaaatgaagatatggctaaaatttga |
31662082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University