View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8332_low_4 (Length: 293)

Name: NF8332_low_4
Description: NF8332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8332_low_4
NF8332_low_4
[»] chr4 (13 HSPs)
chr4 (11-277)||(11847908-11848174)
chr4 (14-277)||(8045827-8046083)
chr4 (198-272)||(53483687-53483760)
chr4 (216-272)||(15408139-15408195)
chr4 (215-281)||(13888641-13888707)
chr4 (236-281)||(15747547-15747592)
chr4 (215-271)||(8834895-8834951)
chr4 (215-281)||(15245215-15245281)
chr4 (217-269)||(14486661-14486713)
chr4 (215-266)||(22724691-22724742)
chr4 (241-271)||(15069781-15069811)
chr4 (241-271)||(15076381-15076411)
chr4 (215-281)||(15308120-15308186)
[»] scaffold0026 (2 HSPs)
scaffold0026 (14-277)||(11845-12102)
scaffold0026 (14-272)||(111491-111741)
[»] chr7 (24 HSPs)
chr7 (14-276)||(18873164-18873420)
chr7 (14-271)||(15167979-15168230)
chr7 (14-267)||(10895795-10896042)
chr7 (14-277)||(12709838-12710095)
chr7 (14-277)||(13122909-13123166)
chr7 (14-281)||(14422789-14423049)
chr7 (26-277)||(13743526-13743769)
chr7 (14-271)||(16009382-16009631)
chr7 (56-277)||(12590638-12590851)
chr7 (69-269)||(16677152-16677348)
chr7 (69-269)||(17651388-17651584)
chr7 (56-277)||(13007280-13007492)
chr7 (216-271)||(11382871-11382926)
chr7 (216-271)||(11389348-11389403)
chr7 (216-277)||(21230954-21231015)
chr7 (216-272)||(20311051-20311107)
chr7 (236-281)||(831624-831669)
chr7 (236-281)||(1196804-1196849)
chr7 (236-281)||(34958578-34958623)
chr7 (215-271)||(13679492-13679548)
chr7 (217-272)||(2971254-2971309)
chr7 (217-272)||(20906461-20906516)
chr7 (241-271)||(11311083-11311113)
chr7 (215-271)||(46625961-46626017)
[»] chr5 (13 HSPs)
chr5 (14-276)||(22750945-22751201)
chr5 (14-277)||(38144531-38144786)
chr5 (14-271)||(28370055-28370304)
chr5 (14-271)||(19512191-19512441)
chr5 (56-276)||(23528478-23528690)
chr5 (215-271)||(18407944-18408000)
chr5 (216-272)||(22438747-22438803)
chr5 (215-281)||(23111190-23111256)
chr5 (217-272)||(19236900-19236955)
chr5 (243-272)||(17021913-17021942)
chr5 (219-272)||(22461158-22461211)
chr5 (219-272)||(22467782-22467835)
chr5 (237-281)||(8952031-8952075)
[»] chr3 (22 HSPs)
chr3 (14-271)||(14762758-14763009)
chr3 (16-269)||(38310802-38311049)
chr3 (33-269)||(20247791-20248021)
chr3 (14-271)||(9534133-9534382)
chr3 (26-269)||(24192771-24193009)
chr3 (14-272)||(23370505-23370756)
chr3 (14-184)||(55499185-55499353)
chr3 (191-277)||(41455092-41455177)
chr3 (14-272)||(24933828-24934077)
chr3 (212-277)||(16801462-16801526)
chr3 (215-271)||(18929244-18929300)
chr3 (215-271)||(17240513-17240569)
chr3 (217-272)||(13302240-13302295)
chr3 (217-272)||(13323787-13323842)
chr3 (217-272)||(12033444-12033499)
chr3 (217-272)||(13312896-13312951)
chr3 (217-272)||(17131732-17131787)
chr3 (237-272)||(23392819-23392854)
chr3 (217-272)||(51301589-51301644)
chr3 (236-272)||(2247649-2247685)
chr3 (253-281)||(10833299-10833327)
chr3 (237-281)||(52337946-52337990)
[»] scaffold1773 (1 HSPs)
scaffold1773 (14-277)||(983-1238)
[»] scaffold0006 (1 HSPs)
scaffold0006 (14-277)||(49984-50239)
[»] chr6 (26 HSPs)
chr6 (32-271)||(23057760-23057993)
chr6 (14-277)||(29614141-29614398)
chr6 (14-281)||(23839003-23839263)
chr6 (14-272)||(10986180-10986431)
chr6 (14-277)||(18800242-18800498)
chr6 (30-271)||(4477678-4477912)
chr6 (131-277)||(930090-930229)
chr6 (14-184)||(21565294-21565462)
chr6 (56-277)||(19785864-19786076)
chr6 (56-277)||(12168211-12168423)
chr6 (56-277)||(19287120-19287332)
chr6 (56-277)||(19878304-19878516)
chr6 (191-272)||(34639986-34640067)
chr6 (56-277)||(19884080-19884292)
chr6 (211-272)||(34646660-34646721)
chr6 (226-272)||(25469704-25469750)
chr6 (216-277)||(24512838-24512899)
chr6 (219-271)||(9187498-9187550)
chr6 (215-271)||(25348486-25348542)
chr6 (215-269)||(25598643-25598697)
chr6 (237-281)||(24441673-24441717)
chr6 (215-271)||(25397172-25397228)
chr6 (237-281)||(29415547-29415591)
chr6 (237-271)||(18659450-18659484)
chr6 (215-271)||(19471335-19471391)
chr6 (244-272)||(28288509-28288537)
[»] scaffold0924 (1 HSPs)
scaffold0924 (14-277)||(745-1002)
[»] scaffold0029 (1 HSPs)
scaffold0029 (55-277)||(111726-111943)
[»] chr8 (14 HSPs)
chr8 (14-277)||(23866418-23866675)
chr8 (14-269)||(8727735-8727984)
chr8 (14-272)||(44477428-44477678)
chr8 (14-272)||(44492586-44492836)
chr8 (14-174)||(27940946-27941104)
chr8 (56-277)||(17054439-17054651)
chr8 (215-281)||(23482043-23482109)
chr8 (215-271)||(18614271-18614327)
chr8 (215-271)||(39364919-39364975)
chr8 (217-271)||(29643386-29643440)
chr8 (216-277)||(14056558-14056619)
chr8 (216-277)||(25111976-25112037)
chr8 (217-272)||(24320670-24320725)
chr8 (215-271)||(21931696-21931752)
[»] scaffold0117 (2 HSPs)
scaffold0117 (14-277)||(1892-2148)
scaffold0117 (14-277)||(8569-8825)
[»] scaffold0025 (1 HSPs)
scaffold0025 (26-269)||(14398-14635)
[»] chr1 (16 HSPs)
chr1 (14-281)||(20437014-20437274)
chr1 (191-277)||(41112010-41112095)
chr1 (215-271)||(32651571-32651627)
chr1 (215-271)||(18712798-18712854)
chr1 (216-271)||(19663517-19663572)
chr1 (215-271)||(20805320-20805376)
chr1 (216-271)||(11158093-11158148)
chr1 (215-269)||(10811785-10811839)
chr1 (217-272)||(20851132-20851187)
chr1 (217-272)||(20857759-20857814)
chr1 (217-272)||(21706276-21706331)
chr1 (217-272)||(21710818-21710873)
chr1 (241-271)||(24476350-24476380)
chr1 (241-271)||(25091418-25091448)
chr1 (237-270)||(18271338-18271371)
chr1 (237-270)||(18275992-18276025)
[»] chr2 (17 HSPs)
chr2 (14-271)||(19661454-19661703)
chr2 (14-281)||(6483523-6483782)
chr2 (14-281)||(6486990-6487249)
chr2 (14-277)||(26583632-26583887)
chr2 (14-184)||(23089137-23089305)
chr2 (14-184)||(23101545-23101713)
chr2 (14-185)||(23878813-23878982)
chr2 (198-272)||(5706023-5706096)
chr2 (215-271)||(21908358-21908414)
chr2 (215-271)||(23265141-23265197)
chr2 (215-271)||(23280209-23280265)
chr2 (215-271)||(24661576-24661632)
chr2 (217-272)||(10577-10632)
chr2 (217-272)||(25180929-25180984)
chr2 (211-269)||(23879002-23879060)
chr2 (211-271)||(23101463-23101524)
chr2 (200-272)||(26885166-26885237)
[»] scaffold0247 (1 HSPs)
scaffold0247 (14-277)||(11146-11402)
[»] scaffold0553 (1 HSPs)
scaffold0553 (14-272)||(10195-10446)
[»] scaffold0544 (1 HSPs)
scaffold0544 (14-272)||(1525-1776)
[»] scaffold0058 (1 HSPs)
scaffold0058 (26-277)||(109-351)
[»] scaffold0090 (1 HSPs)
scaffold0090 (14-277)||(17973-18230)
[»] scaffold0634 (1 HSPs)
scaffold0634 (14-106)||(3466-3558)
[»] scaffold0476 (1 HSPs)
scaffold0476 (14-184)||(3375-3544)
[»] scaffold0077 (1 HSPs)
scaffold0077 (14-184)||(3704-3872)
[»] scaffold0154 (1 HSPs)
scaffold0154 (197-277)||(30838-30918)
[»] scaffold0796 (2 HSPs)
scaffold0796 (75-277)||(1727-1920)
scaffold0796 (75-277)||(5750-5943)
[»] scaffold0456 (4 HSPs)
scaffold0456 (26-110)||(806-889)
scaffold0456 (26-110)||(7951-8034)
scaffold0456 (201-276)||(916-991)
scaffold0456 (201-276)||(8061-8136)
[»] scaffold0129 (1 HSPs)
scaffold0129 (198-277)||(45269-45347)
[»] scaffold0020 (1 HSPs)
scaffold0020 (215-271)||(101928-101984)
[»] scaffold0107 (2 HSPs)
scaffold0107 (216-277)||(40526-40587)
scaffold0107 (237-281)||(3905-3949)
[»] scaffold0310 (1 HSPs)
scaffold0310 (216-272)||(17643-17699)
[»] scaffold0222 (1 HSPs)
scaffold0222 (215-271)||(16819-16875)
[»] scaffold0019 (1 HSPs)
scaffold0019 (216-272)||(135473-135529)
[»] scaffold0004 (2 HSPs)
scaffold0004 (215-271)||(116895-116951)
scaffold0004 (237-270)||(60441-60474)
[»] scaffold0461 (1 HSPs)
scaffold0461 (215-271)||(8-64)
[»] scaffold0235 (1 HSPs)
scaffold0235 (218-270)||(22594-22646)
[»] scaffold0146 (1 HSPs)
scaffold0146 (215-271)||(13631-13687)
[»] scaffold0124 (1 HSPs)
scaffold0124 (216-271)||(34276-34331)
[»] scaffold0138 (1 HSPs)
scaffold0138 (215-281)||(12296-12362)
[»] scaffold0139 (1 HSPs)
scaffold0139 (216-271)||(14997-15052)
[»] scaffold0096 (1 HSPs)
scaffold0096 (215-281)||(39497-39563)
[»] scaffold0815 (1 HSPs)
scaffold0815 (220-277)||(1453-1510)
[»] scaffold0317 (1 HSPs)
scaffold0317 (215-271)||(1385-1441)
[»] scaffold0001 (1 HSPs)
scaffold0001 (200-272)||(493028-493099)
[»] scaffold0348 (1 HSPs)
scaffold0348 (217-272)||(9336-9391)
[»] scaffold0127 (1 HSPs)
scaffold0127 (217-272)||(10239-10294)
[»] scaffold2054 (1 HSPs)
scaffold2054 (219-277)||(717-775)
[»] scaffold1318 (1 HSPs)
scaffold1318 (217-271)||(1913-1967)
[»] scaffold0790 (1 HSPs)
scaffold0790 (243-277)||(5480-5514)
[»] scaffold0429 (1 HSPs)
scaffold0429 (237-281)||(1990-2034)
[»] scaffold0335 (1 HSPs)
scaffold0335 (215-271)||(2628-2684)


Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 11 - 277
Target Start/End: Original strand, 11847908 - 11848174
Alignment:
Q  11 catcatcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacat 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11847908 catcatcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacat 11848007  T
Q  111 tatattataagaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccac 210  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11848008 tatattataaaaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaattgattttaatttttcaaaactatgccac 11848107  T
Q  211 taggtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttg 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11848108 taggtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttg 11848174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 14 - 277
Target Start/End: Complemental strand, 8046083 - 8045827
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattat 113  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8046083 catcatacacaaattcatcaattcatccaatcactcataaatttcaatcaatttatgatcacagcaacaacaaggattaagttttcattctgaacattat 8045984  T
Q  114 attataagaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccactag 213  Q
    |||| ||||| |||||||| ||| ||||||||| | |||||||||  || ||||||||||||||||||||||      |||| ||||||||||| | |||    
T  8045983 attacaagagaattaacattatctttacccatttcccttcagaattctcgtcaaaccctaaccctcaattta------ttttccaaaactatgcaattag 8045890  T
Q  214 gtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttg 277  Q
    ||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8045889 gtcaa-tttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttg 8045827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 198 - 272
Target Start/End: Original strand, 53483687 - 53483760
Alignment:
Q  198 aaaactatgccactaggtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttag 272  Q
    |||||||| | | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53483687 aaaactattcaattaggtcaattt-caggaattatagattatgattattgagagatagtctcacccttaccttag 53483760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 216 - 272
Target Start/End: Original strand, 15408139 - 15408195
Alignment:
Q  216 caattttcaggaattatagattatgattattgagagatagtctcacccttaccttag 272  Q
    |||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||    
T  15408139 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttag 15408195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 215 - 281
Target Start/End: Original strand, 13888641 - 13888707
Alignment:
Q  215 tcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttgatga 281  Q
    ||||||||||| ||||||| |||||||| |||||||| ||| ||||||||||||||| ||| |||||    
T  13888641 tcaattttcagaaattatacattatgatcattgagagttagcctcacccttaccttaatttagatga 13888707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 281
Target Start/End: Complemental strand, 15747592 - 15747547
Alignment:
Q  236 ttatgattattgagagatagtctcacccttaccttagttttgatga 281  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||    
T  15747592 ttataattattgagagttagtctcacccttaccttagttttgatga 15747547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 8834895 - 8834951
Alignment:
Q  215 tcaattttcaggaattatagattatgattattgagagatagtctcacccttacctta 271  Q
    ||||||||||| ||||||| |||||||| |||||||| ||| |||||||||||||||    
T  8834895 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttacctta 8834951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 281
Target Start/End: Original strand, 15245215 - 15245281
Alignment:
Q  215 tcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttgatga 281  Q
    ||||||||||| ||||||| |||| ||| |||||||| ||| ||||||||||||||| ||| |||||    
T  15245215 tcaattttcagaaattatatattacgatcattgagagttagcctcacccttaccttaatttagatga 15245281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 14486661 - 14486713
Alignment:
Q  217 aattttcaggaattatagattatgattattgagagatagtctcacccttacct 269  Q
    ||||||||| ||||||| |||||||| |||||  |||||||||||||||||||    
T  14486661 aattttcagaaattatatattatgatcattgaaggatagtctcacccttacct 14486713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 266
Target Start/End: Complemental strand, 22724742 - 22724691
Alignment:
Q  215 tcaattttcaggaattatagattatgattattgagagatagtctcaccctta 266  Q
    ||||||||||| |||| || | ||| ||||||||||||||||||||||||||    
T  22724742 tcaattttcagaaattctatactattattattgagagatagtctcaccctta 22724691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 271
Target Start/End: Original strand, 15069781 - 15069811
Alignment:
Q  241 attattgagagatagtctcacccttacctta 271  Q
    |||||||||||||||||||||||||||||||    
T  15069781 attattgagagatagtctcacccttacctta 15069811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 271
Target Start/End: Original strand, 15076381 - 15076411
Alignment:
Q  241 attattgagagatagtctcacccttacctta 271  Q
    |||||||||||||||||||||||||||||||    
T  15076381 attattgagagatagtctcacccttacctta 15076411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 281
Target Start/End: Original strand, 15308120 - 15308186
Alignment:
Q  215 tcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttgatga 281  Q
    ||||||||||| ||||||| |||| ||| |||||||| ||| |||||||||| |||| ||| |||||    
T  15308120 tcaattttcagaaattatatattacgatcattgagagttagcctcacccttaacttaatttagatga 15308186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 14 - 277
Target Start/End: Complemental strand, 12102 - 11845
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattat 113  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  12102 catcatacacaaattcatcaattcatccaatcactcataaatttcaatcaacttatgatcacagcaacaacaaagattaagttttcattctgaagattat 12003  T
Q  114 attataagaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccactag 213  Q
    |||| ||||| |||||||||||||||||||||| | |||||||||| ||||||||||||||| |||||||||      |||| ||||||||||| | |||    
T  12002 attacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaactctcaattta------ttttccaaaactatgcaattag 11909  T
Q  214 gtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttg 277  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11908 gtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttg 11845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 14 - 272
Target Start/End: Original strand, 111491 - 111741
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattat 113  Q
    ||||||||| |  |||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||  | |||||||||||||||||| |||||||     
T  111491 catcatacaaatcttcatcaattcatccaatcaatcataattt-caatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattac 111589  T
Q  114 attataagaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccactag 213  Q
    |||| || || ||||||||||||| |||||||||| | |||||||| ||||||||||||||||||||||||      ||||| ||||||||||| | |||    
T  111590 attacaacagaattaacatgatcaatacccattcc-cctcagaatcatcatcaaaccctaaccctcaattt------attttccaaaactatgcaattag 111682  T
Q  214 gtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttag 272  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  111683 gtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 111741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 14 - 276
Target Start/End: Original strand, 18873164 - 18873420
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattat 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  18873164 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattat 18873263  T
Q  114 attataagaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccactag 213  Q
    |||| ||||| |||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||      || || ||||||||||| | |||    
T  18873264 attacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaattt------atcttccaaaactatgcaattag 18873357  T
Q  214 gtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttagtttt 276  Q
    |||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  18873358 gtcaattttcagaaattatagattatgattatcgagagaaagtctcacccttaccttagtttt 18873420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 271
Target Start/End: Original strand, 15167979 - 15168230
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattat 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  15167979 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattat 15168078  T
Q  114 attataagaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccactag 213  Q
    |||| ||||| |||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||      || || ||||||||||| | |||    
T  15168079 attacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaattt------atcttccaaaactatgcaattag 15168172  T
Q  214 gtcaattttcaggaattatagattatgattattgagagatagtctcacccttacctta 271  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  15168173 gtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 15168230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 14 - 267
Target Start/End: Complemental strand, 10896042 - 10895795
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattat 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10896042 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattat 10895943  T
Q  114 attataagaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccactag 213  Q
    |||| ||||| ||||||||||||| |||||||||| | |||||||| ||||||||||||||||| ||||||||      ||   |||||||||| | |||    
T  10895942 attacaagagaattaacatgatcaatacccattcc-cctcagaatcatcatcaaaccctaacccacaatttat-----cttccaaaaactatgcaattag 10895849  T
Q  214 gtcaattttcaggaattatagattatgattattgagagatagtctcacccttac 267  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  10895848 gtcaattttcaaaaattatagattatgattattgagagatagtctcacccttac 10895795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 14 - 277
Target Start/End: Complemental strand, 12710095 - 12709838
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcactcataattttcaa-tcaatttatgatcacagcaacaacaaagattaagttttcattctgaacatta 112  Q
    |||||||||||||||||||||||||||||||||||||||| || ||| ||| |||| ||||||||||||||||| ||||||||||  |||||||||||||    
T  12710095 catcatacacaaattcatcaattcatccaatcactcataaattccaaatcagtttacgatcacagcaacaacaa-gattaagtttatattctgaacatta 12709997  T
Q  113 tattataag-aggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccact 211  Q
    ||||| ||  || |||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||      |||| ||||||||||| | |    
T  12709996 tattacaaatagaattaacatgatcattacccatttctcttcataatcatcatcaaaccctaaccctcaattta------ttttccaaaactatgcaatt 12709903  T
Q  212 aggtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttg 277  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  12709902 aggtcaa-tttcaggaattataaattatgattattgagagatagtctcacccttaccttagttttg 12709838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 14 - 277
Target Start/End: Complemental strand, 13123166 - 13122909
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcactcataattttcaa-tcaatttatgatcacagcaacaacaaagattaagttttcattctgaacatta 112  Q
    |||||||||||||||||||||||||||||||||||||||| || ||| ||| |||| ||||||||||||||||| ||||||||||  |||||||||||||    
T  13123166 catcatacacaaattcatcaattcatccaatcactcataaattccaaatcagtttacgatcacagcaacaacaa-gattaagtttatattctgaacatta 13123068  T
Q  113 tattataag-aggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccact 211  Q
    ||||| ||  || |||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||      |||| ||||||||||| | |    
T  13123067 tattacaaatagaattaacatgatcattacccatttctcttcataatcatcatcaaaccctaaccctcaattta------ttttccaaaactatgcaatt 13122974  T
Q  212 aggtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttg 277  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13122973 aggtcaa-tttcaggaattataaattatgattattgagagatagtctcacccttaccttagttttg 13122909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 14 - 281
Target Start/End: Original strand, 14422789 - 14423049
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattat 113  Q
    ||||||||| |  |||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||| | |||||||||||||||||| |||||||     
T  14422789 catcatacaaatcttcatcaattcatccaatcaatcataattt-caatcaatttatgatcacaacaacaatatagattaagttttcattctaaacattac 14422887  T
Q  114 attataagaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccactag 213  Q
    |||| || || ||||||||||||| |||||||||| | |||||||| ||||||||||||||||||||||||||      ||   |||||||||| | |||    
T  14422888 attacaacagaattaacatgatcaatacccattcc-cctcagaatcatcatcaaaccctaaccctcaatttat-----cttccaaaaactatgcaattag 14422981  T
Q  214 gtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttgatga 281  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14422982 gtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagtttagatga 14423049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 26 - 277
Target Start/End: Original strand, 13743526 - 13743769
Alignment:
Q  26 attcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattatattataagagga 125  Q
    ||||||||||| |||||| ||  |||||||| ||| ||||||||||||||||||| |||| ||||||||| |||| ||||||||  ||| || ||||  |    
T  13743526 attcatcaatttatccaaccaagcataattt-caaccaatttatgatcacagcaataacatagattaagtcttcaatctgaacagcataatacaagaaaa 13743624  T
Q  126 ttaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccactaggtcaattttcag 225  Q
    ||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||      ||||| ||||||||||| | |||||||| ||||||    
T  13743625 ttaacatgatcattacccatttctcttcataatcatcatcaaaccctaaccctcaattt------attttccaaaactatgcaattaggtcaa-tttcag 13743717  T
Q  226 gaattatagattatgattattgagagatagtctcacccttaccttagttttg 277  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13743718 gaattataaattatgattattgagagatagtctcacccttaccttagttttg 13743769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 14 - 271
Target Start/End: Original strand, 16009382 - 16009631
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattat 113  Q
    ||||||||| |  |||||||||||||||||||| ||||||||| |||||| |||||||||||| |||||  | |||||||||||||||||| |||||||     
T  16009382 catcatacaaatcttcatcaattcatccaatcaatcataattt-caatcagtttatgatcacaacaacagtatagattaagttttcattctaaacattac 16009480  T
Q  114 attataagaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccactag 213  Q
    |||| || || ||||||||||||| |||||||||| | |||||||| |||||||||| |||||| ||||||      || || |||||| |||| | |||    
T  16009481 attacaacagaattaacatgatcaatacccattcc-cctcagaatcatcatcaaaccttaacccacaattt------atcttccaaaaccatgcaattag 16009573  T
Q  214 gtcaattttcaggaattatagattatgattattgagagatagtctcacccttacctta 271  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  16009574 gtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 16009631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 56 - 277
Target Start/End: Complemental strand, 12590851 - 12590638
Alignment:
Q  56 ttcaatcaatttatg-atcacagcaacaacaaagattaagttttcattctgaacattatattataagaggattaacatgatcattacccattcctcttca 154  Q
    ||||||||||| ||| || ||||||||||||  ||||||| ||||||||| ||||||| |||  ||||  | |||||| ||| |||| ||||||   |||    
T  12590851 ttcaatcaattaatggattacagcaacaacatggattaagctttcattcttaacattaaattccaagaaaactaacatcatctttactcattcca--tca 12590754  T
Q  155 gaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccactaggtcaattttcaggaattatagattatgattattgagagata 254  Q
    ||||| |||||||||||||||  |||   ||||   ||||| ||||||||| | | ||||||||||| ||| ||||||||||||||||||||||||||||    
T  12590753 gaatcatcatcaaaccctaactttca---tatt---attttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagata 12590661  T
Q  255 gtctcacccttaccttagttttg 277  Q
    |||||||||||||||||||||||    
T  12590660 gtctcacccttaccttagttttg 12590638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 69 - 269
Target Start/End: Original strand, 16677152 - 16677348
Alignment:
Q  69 tgatcacagcaacaacaaagattaagttttcattctgaacattatattataagaggattaacatgatcattacccattcctcttcagaatcgtcatcaaa 168  Q
    ||||||||||||||  | |||||| |  |||||||||||||| |  ||| || |   |||||||||||||||| |  ||||| ||| |||| ||||||||    
T  16677152 tgatcacagcaacattatagattaggaattcattctgaacatcactttacaacatatttaacatgatcattacaccatcctcctcaaaatcatcatcaaa 16677251  T
Q  169 ccctaaccctcaatttattttaatttttcaaaactatgccactaggtcaattttcaggaattatagattatgattattgagagatagtctcacccttacc 268  Q
    |||||||||| |||||    ||  ||   |||||||||| | |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  16677252 ccctaacccttaattt----tatcttccaaaaactatgcaattaggtcaatttttagaaattatagattatgattattgagagatagtctcacccttacc 16677347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 69 - 269
Target Start/End: Original strand, 17651388 - 17651584
Alignment:
Q  69 tgatcacagcaacaacaaagattaagttttcattctgaacattatattataagaggattaacatgatcattacccattcctcttcagaatcgtcatcaaa 168  Q
    ||||||||||||||  | |||||| |  |||||||||||||| |  ||| || |   |||||||||||||||| |  ||||| ||| |||| ||||||||    
T  17651388 tgatcacagcaacattatagattaggaattcattctgaacatcactttacaacatatttaacatgatcattacaccatcctcctcaaaatcatcatcaaa 17651487  T
Q  169 ccctaaccctcaatttattttaatttttcaaaactatgccactaggtcaattttcaggaattatagattatgattattgagagatagtctcacccttacc 268  Q
    |||||||||| |||||    ||  ||   |||||||||| | |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  17651488 ccctaacccttaattt----tatcttccaaaaactatgcaattaggtcaatttttagaaattatagattatgattattgagagatagtctcacccttacc 17651583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 56 - 277
Target Start/End: Original strand, 13007280 - 13007492
Alignment:
Q  56 ttcaatcaatttatg-atcacagcaacaacaaagattaagttttcattctgaacattatattataagaggattaacatgatcattacccattcctcttca 154  Q
    ||||||||||| ||| || ||||||||||||  ||||||| |||| |||| ||||||| |||  ||||  | |||||| ||| |||| ||||||   |||    
T  13007280 ttcaatcaattcatggattacagcaacaacatggattaagatttcgttcttaacattaaattccaagaa-actaacatcatctttactcattcca--tca 13007376  T
Q  155 gaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccactaggtcaattttcaggaattatagattatgattattgagagata 254  Q
    ||||| |||||||||||||||  |||  |||||||       ||||||||| | | ||||||||||| ||| ||||||||||||||||||||||||||||    
T  13007377 gaatcatcatcaaaccctaactttcatcttattttc------caaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagata 13007469  T
Q  255 gtctcacccttaccttagttttg 277  Q
    |||||||||||||||||||||||    
T  13007470 gtctcacccttaccttagttttg 13007492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 216 - 271
Target Start/End: Complemental strand, 11382926 - 11382871
Alignment:
Q  216 caattttcaggaattatagattatgattattgagagatagtctcacccttacctta 271  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  11382926 caattttcagaaattatatattatgattattgagagatagtctcacccttacctta 11382871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 216 - 271
Target Start/End: Complemental strand, 11389403 - 11389348
Alignment:
Q  216 caattttcaggaattatagattatgattattgagagatagtctcacccttacctta 271  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  11389403 caattttcagaaattatatattatgattattgagagatagtctcacccttacctta 11389348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 216 - 277
Target Start/End: Complemental strand, 21231015 - 21230954
Alignment:
Q  216 caattttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttg 277  Q
    |||||||||| ||||||| | |||||||||||||||||||||||||||||||||||| ||||    
T  21231015 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttagatttg 21230954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 216 - 272
Target Start/End: Complemental strand, 20311107 - 20311051
Alignment:
Q  216 caattttcaggaattatagattatgattattgagagatagtctcacccttaccttag 272  Q
    |||||||||| |||||||  |||||||||||||||||||||||||||||||||||||    
T  20311107 caattttcagaaattatacgttatgattattgagagatagtctcacccttaccttag 20311051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 281
Target Start/End: Complemental strand, 831669 - 831624
Alignment:
Q  236 ttatgattattgagagatagtctcacccttaccttagttttgatga 281  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||    
T  831669 ttataattattgagagttagtctcacccttaccttagttttgatga 831624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 281
Target Start/End: Complemental strand, 1196849 - 1196804
Alignment:
Q  236 ttatgattattgagagatagtctcacccttaccttagttttgatga 281  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||    
T  1196849 ttataattattgagagttagtctcacccttaccttagttttgatga 1196804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 34958578 - 34958623
Alignment:
Q  236 ttatgattattgagagatagtctcacccttaccttagttttgatga 281  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||    
T  34958578 ttataattattgagagttagtctcacccttaccttagttttgatga 34958623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 13679492 - 13679548
Alignment:
Q  215 tcaattttcaggaattatagattatgattattgagagatagtctcacccttacctta 271  Q
    ||||||||||  ||||||| || ||||| ||||| ||||||||||||||||||||||    
T  13679492 tcaattttcaaaaattatatatcatgatcattgaaagatagtctcacccttacctta 13679548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 272
Target Start/End: Original strand, 2971254 - 2971309
Alignment:
Q  217 aattttcaggaattatagattatgattattgagagatagtctcacccttaccttag 272  Q
    ||||||||| ||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  2971254 aattttcagaaattataaattatgactattgaaagataatcccacccttaccttag 2971309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 272
Target Start/End: Complemental strand, 20906516 - 20906461
Alignment:
Q  217 aattttcaggaattatagattatgattattgagagatagtctcacccttaccttag 272  Q
    ||||||||| ||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  20906516 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 20906461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 271
Target Start/End: Original strand, 11311083 - 11311113
Alignment:
Q  241 attattgagagatagtctcacccttacctta 271  Q
    |||||||||||||||||||||||||||||||    
T  11311083 attattgagagatagtctcacccttacctta 11311113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 46625961 - 46626017
Alignment:
Q  215 tcaattttcaggaattatagattatgattattgagagatagtctcacccttacctta 271  Q
    ||||||||| | ||||||| ||||| || |||||||| |||||||||||||| ||||    
T  46625961 tcaattttccgaaattatatattataatcattgagagttagtctcacccttatctta 46626017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 14 - 276
Target Start/End: Original strand, 22750945 - 22751201
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattat 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  22750945 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattat 22751044  T
Q  114 attataagaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccactag 213  Q
    |||| ||||| |||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||      || || ||||||||||| | |||    
T  22751045 attacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaattt------atcttccaaaactatgcaattag 22751138  T
Q  214 gtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttagtttt 276  Q
    |||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  22751139 gtcaattttcagaaattatagattatgattatcgagagaaagtctcacccttaccttagtttt 22751201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 14 - 277
Target Start/End: Complemental strand, 38144786 - 38144531
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattat 113  Q
    ||||||||| |  |||||||||||||||||||| || |||||| ||||||||||||||||||| |||||  | |||||||||||||||||| |||||||     
T  38144786 catcatacaaatcttcatcaattcatccaatcaatcgtaattt-caatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattac 38144688  T
Q  114 attataagaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccactag 213  Q
    |||| || || ||||||||||||| |||||||||| | |||||||| ||||||||||||||||||||||||      ||||| ||||| ||||| | |||    
T  38144687 attacaatagaattaacatgatcaatacccattcc-cctcagaatcatcatcaaaccctaaccctcaattt------attttccaaaattatgcaattag 38144595  T
Q  214 gtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttg 277  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38144594 gtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttg 38144531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 14 - 271
Target Start/End: Complemental strand, 28370304 - 28370055
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattat 113  Q
    ||||||||| |  ||||||||||||||| |||| ||||||||| ||||||||||||||||||| |||||  | |||||||||||||||||| |||||||     
T  28370304 catcatacaaatcttcatcaattcatcccatcaatcataattt-caatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattac 28370206  T
Q  114 attataagaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccactag 213  Q
     ||| || || ||||||||||||| |||||||||| | ||| |||| ||||||||||||||||||||||||      ||||| ||||||||||| | |||    
T  28370205 gttacaacagaattaacatgatcaatacccattcc-cctcaaaatcatcatcaaaccctaaccctcaattt------attttccaaaactatgcaattag 28370113  T
Q  214 gtcaattttcaggaattatagattatgattattgagagatagtctcacccttacctta 271  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28370112 gtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 28370055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 14 - 271
Target Start/End: Original strand, 19512191 - 19512441
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattat 113  Q
    ||||||||| |  |||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||  | |||||||||||||||||| |||||||     
T  19512191 catcatacaaatcttcatcaattcatccaatcaatcataattt-caatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattac 19512289  T
Q  114 attataagaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccactag 213  Q
     ||| || || ||||||||||||| |||||||||| | ||| |||| ||||||||||||||||||||||||||      ||   |||||||||| | |||    
T  19512290 gttacaatagaattaacatgatcaatacccattcc-cctcaaaatcatcatcaaaccctaaccctcaatttat-----cttccaaaaactatgcaattag 19512383  T
Q  214 gtcaattttcaggaattatagattatgattattgagagatagtctcacccttacctta 271  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  19512384 gtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 19512441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 56 - 276
Target Start/End: Original strand, 23528478 - 23528690
Alignment:
Q  56 ttcaatcaatttatg-atcacagcaacaacaaagattaagttttcattctgaacattatattataagaggattaacatgatcattacccattcctcttca 154  Q
    ||||||||||| ||| || ||||||||||||  ||||||| |||| |||| ||||||| |||  ||||  | |||||| ||| |||| ||||||   |||    
T  23528478 ttcaatcaattcatggattacagcaacaacatggattaagatttcgttcttaacattaaattccaagaaaactaacatcatccttactcattcca--tca 23528575  T
Q  155 gaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccactaggtcaattttcaggaattatagattatgattattgagagata 254  Q
    ||||| |||||||||||||||  |||  |||||||       ||||||||| | | ||||||||||| ||| ||||||||||||||||||||||||||||    
T  23528576 gaatcatcatcaaaccctaactttcatcttattttc------caaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagata 23528668  T
Q  255 gtctcacccttaccttagtttt 276  Q
    ||||||||||||||||||||||    
T  23528669 gtctcacccttaccttagtttt 23528690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 215 - 271
Target Start/End: Complemental strand, 18408000 - 18407944
Alignment:
Q  215 tcaattttcaggaattatagattatgattattgagagatagtctcacccttacctta 271  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  18408000 tcaattttcagaaattatatattatgattattgagagatagtctcacccttacctta 18407944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 216 - 272
Target Start/End: Complemental strand, 22438803 - 22438747
Alignment:
Q  216 caattttcaggaattatagattatgattattgagagatagtctcacccttaccttag 272  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  22438803 caattttcagaaattatacattatgattattgagagatagtctcacccttaccttag 22438747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 215 - 281
Target Start/End: Complemental strand, 23111256 - 23111190
Alignment:
Q  215 tcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttgatga 281  Q
    ||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||| ||| |||||    
T  23111256 tcaattttcagaaattatatactatgattattgagagatagtctcacccttaccttaatttagatga 23111190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 272
Target Start/End: Original strand, 19236900 - 19236955
Alignment:
Q  217 aattttcaggaattatagattatgattattgagagatagtctcacccttaccttag 272  Q
    ||||||||| ||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  19236900 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 19236955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 272
Target Start/End: Complemental strand, 17021942 - 17021913
Alignment:
Q  243 tattgagagatagtctcacccttaccttag 272  Q
    ||||||||||||||||||||||||||||||    
T  17021942 tattgagagatagtctcacccttaccttag 17021913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 272
Target Start/End: Original strand, 22461158 - 22461211
Alignment:
Q  219 ttttcaggaattatagattatgattattgagagatagtctcacccttaccttag 272  Q
    ||||||| ||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  22461158 ttttcagaaattatatattatgactattgaaagataatcccacccttaccttag 22461211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 272
Target Start/End: Original strand, 22467782 - 22467835
Alignment:
Q  219 ttttcaggaattatagattatgattattgagagatagtctcacccttaccttag 272  Q
    ||||||| ||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  22467782 ttttcagaaattatatattatgactattgaaagataatcccacccttaccttag 22467835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 281
Target Start/End: Complemental strand, 8952075 - 8952031
Alignment:
Q  237 tatgattattgagagatagtctcacccttaccttagttttgatga 281  Q
    ||||||||||||||| ||| ||||||||||||||| ||| |||||    
T  8952075 tatgattattgagagttagcctcacccttaccttaatttagatga 8952031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 271
Target Start/End: Complemental strand, 14763009 - 14762758
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattat 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  14763009 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattat 14762910  T
Q  114 attataagaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccactag 213  Q
    |||| ||||| |||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||      || || ||||||||||| | |||    
T  14762909 attacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaattt------atcttccaaaactatgcaattag 14762816  T
Q  214 gtcaattttcaggaattatagattatgattattgagagatagtctcacccttacctta 271  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  14762815 gtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 14762758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 16 - 269
Target Start/End: Complemental strand, 38311049 - 38310802
Alignment:
Q  16 tcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattatat 115  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  38311049 tcatacacaaattcatccattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatat 38310950  T
Q  116 tataagaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccactaggt 215  Q
    || ||||| |||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||      || || ||||||||||| | |||||    
T  38310949 tacaagagaattaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaattt------atcttccaaaactatgcaattaggt 38310856  T
Q  216 caattttcaggaattatagattatgattattgagagatagtctcacccttacct 269  Q
    |||| ||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  38310855 caatattcagaaattatagattatgattatcgagagatagtctcacccttacct 38310802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 33 - 269
Target Start/End: Complemental strand, 20248021 - 20247791
Alignment:
Q  33 aattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattatattataagaggattaacat 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||  ||||||||    
T  20248021 aattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagaaaattaacat 20247922  T
Q  133 gatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccactaggtcaattttcaggaattat 232  Q
    |||||||||||||| | |||||||||| ||||||||||||||||||||||||      || || ||||||||||| | ||||||||||||||| ||||||    
T  20247921 gatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaattt------atcttccaaaactatgcaattaggtcaattttcagaaattat 20247828  T
Q  233 agattatgattattgagagatagtctcacccttacct 269  Q
    |||||||||||||||||||||||||||||||||||||    
T  20247827 agattatgattattgagagatagtctcacccttacct 20247791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 14 - 271
Target Start/End: Original strand, 9534133 - 9534382
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattat 113  Q
    ||||||||| |  |||||||||||||||||||| ||||||||| ||||||||||||||||||  |||||  | |||||||||||||||||| |||||||     
T  9534133 catcatacaaatcttcatcaattcatccaatcaatcataattt-caatcaatttatgatcacgacaacagtatagattaagttttcattctaaacattac 9534231  T
Q  114 attataagaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccactag 213  Q
    |||| || || ||||||||||||| |||||||||| | |||||||| ||||||||||||||||||||||||      ||||| ||||||||||| | |||    
T  9534232 attacaacagaattaacatgatcaatacccattccac-tcagaatcatcatcaaaccctaaccctcaattt------attttccaaaactatgcaattag 9534324  T
Q  214 gtcaattttcaggaattatagattatgattattgagagatagtctcacccttacctta 271  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  9534325 gtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 9534382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 26 - 269
Target Start/End: Original strand, 24192771 - 24193009
Alignment:
Q  26 attcatcaattcatccaatcactcataattttcaatcaatttatgat-cacagcaacaacaaagattaagttttcattctgaacattatattataagagg 124  Q
    ||||||||||| ||||||||| ||||| |||||||||| |||||||| |||||||||| || |||||||||||||||||||||||| | |||| || ||     
T  24192771 attcatcaatttatccaatcaatcata-ttttcaatcagtttatgattcacagcaacagcatagattaagttttcattctgaacatcacattacaacaga 24192869  T
Q  125 attaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccactaggtcaattttca 224  Q
    |||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||      ||   |||||||||| | ||||||||||||||    
T  24192870 attaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttat-----cttccaaaaactatgcaattaggtcaattttca 24192964  T
Q  225 ggaattatagattatgattattgagagatagtctcacccttacct 269  Q
    | |||||||||||||||||||||||||||||||||||||||||||    
T  24192965 gaaattatagattatgattattgagagatagtctcacccttacct 24193009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 14 - 272
Target Start/End: Complemental strand, 23370756 - 23370505
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattat 113  Q
    ||||||||| |  |||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||  | |||||||||||||||||| |||||||     
T  23370756 catcatacaaatcttcatcaattcatccaatcaatcataattt-caatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattac 23370658  T
Q  114 attataagaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccactag 213  Q
    |||| || || ||||||||||||| |||||||||| | |||||||| ||||||||||||||||| ||||||||      ||   |||||||||| | |||    
T  23370657 attacaacagaattaacatgatcaatacccattcc-cctcagaatcatcatcaaaccctaacccacaatttat-----cttccaaaaactatgcaattag 23370564  T
Q  214 gtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttag 272  Q
    |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  23370563 gtcaattttcagaaattatagattatgattattgagagatagtcccacccttaccttag 23370505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 55499353 - 55499185
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattat 113  Q
    ||||||||| || || ||||||||||||||||| | ||| ||||||||||||||||||||||||||||   | |||||||| |||||||| |||||| |     
T  55499353 catcatacaaaacttgatcaattcatccaatcaattata-ttttcaatcaatttatgatcacagcaactgtatagattaagatttcattccgaacatcac 55499255  T
Q  114 attataagaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaattt 184  Q
    |||| || |  |||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||    
T  55499254 attacaacataattaacatgatcattacccattcc-cctcagaatcatcatcaaaccctaaccctcaattt 55499185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 191 - 277
Target Start/End: Complemental strand, 41455177 - 41455092
Alignment:
Q  191 atttttcaaaactatgccactaggtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttg 277  Q
    ||||| ||||||||| | | ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41455177 attttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcacccttaccttagttttg 41455092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 14 - 272
Target Start/End: Complemental strand, 24934077 - 24933828
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatg-atcacagcaacaacaaagattaagttttcattctgaacatta 112  Q
    ||||||||| | |||||||||||||| ||||   ||| || || ||||||||| ||| ||  |||||||||||  ||||||| ||||||||| |||||||    
T  24934077 catcatacaaatattcatcaattcatacaatacatcaaaaatt-caatcaattaatggattgcagcaacaacatggattaagctttcattcttaacatta 24933979  T
Q  113 tattataagaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccacta 212  Q
     |||   |||  | |||||| ||| |||| ||||||   |||||||| ||||||||||||||   |||   ||||   ||||| ||||||||| | | ||    
T  24933978 aattccgagaaaactaacatcatctttactcattcca--tcagaatcatcatcaaaccctaattttca---tatt---attttccaaaactattcaatta 24933887  T
Q  213 ggtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttag 272  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  24933886 ggtcaattt-cagaaattatagattatgattattgagagatagtctcacccttaccttag 24933828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 212 - 277
Target Start/End: Complemental strand, 16801526 - 16801462
Alignment:
Q  212 aggtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttg 277  Q
    |||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  16801526 aggtcaattttcagaaattatatat-atgattattgagagatagtctcacccttaccttagttttg 16801462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 18929244 - 18929300
Alignment:
Q  215 tcaattttcaggaattatagattatgattattgagagatagtctcacccttacctta 271  Q
    ||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||    
T  18929244 tcaattttcagaaattatatatcatgattattgagagatagtctcacccttacctta 18929300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 271
Target Start/End: Complemental strand, 17240569 - 17240513
Alignment:
Q  215 tcaattttcaggaattatagattatgattattgagagatagtctcacccttacctta 271  Q
    ||||||||||| ||||||  |||| ||||||||||||||||||||||||||||||||    
T  17240569 tcaattttcagaaattatgtattaagattattgagagatagtctcacccttacctta 17240513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 272
Target Start/End: Complemental strand, 13302295 - 13302240
Alignment:
Q  217 aattttcaggaattatagattatgattattgagagatagtctcacccttaccttag 272  Q
    ||||||||| ||||| | |||||||||||||| ||||| |||||||||||||||||    
T  13302295 aattttcagaaattacatattatgattattgaaagataatctcacccttaccttag 13302240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 272
Target Start/End: Complemental strand, 13323842 - 13323787
Alignment:
Q  217 aattttcaggaattatagattatgattattgagagatagtctcacccttaccttag 272  Q
    ||||||||| ||||| | |||||||||||||| ||||| |||||||||||||||||    
T  13323842 aattttcagaaattacatattatgattattgaaagataatctcacccttaccttag 13323787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 272
Target Start/End: Complemental strand, 12033499 - 12033444
Alignment:
Q  217 aattttcaggaattatagattatgattattgagagatagtctcacccttaccttag 272  Q
    ||||||||| ||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  12033499 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 12033444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 272
Target Start/End: Complemental strand, 13312951 - 13312896
Alignment:
Q  217 aattttcaggaattatagattatgattattgagagatagtctcacccttaccttag 272  Q
    ||||||||  ||||| | |||||||||||||| ||||| |||||||||||||||||    
T  13312951 aattttcaaaaattacatattatgattattgaaagataatctcacccttaccttag 13312896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 272
Target Start/End: Original strand, 17131732 - 17131787
Alignment:
Q  217 aattttcaggaattatagattatgattattgagagatagtctcacccttaccttag 272  Q
    ||||||||| ||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  17131732 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 17131787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 237 - 272
Target Start/End: Complemental strand, 23392854 - 23392819
Alignment:
Q  237 tatgattattgagagatagtctcacccttaccttag 272  Q
    ||||||||||||||| ||||||||||||||||||||    
T  23392854 tatgattattgagagttagtctcacccttaccttag 23392819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 272
Target Start/End: Original strand, 51301589 - 51301644
Alignment:
Q  217 aattttcaggaattatagattatgattattgagagatagtctcacccttaccttag 272  Q
    ||||||||| ||||| | |||||||||||||  ||||| |||||||||||||||||    
T  51301589 aattttcagaaattacatattatgattattggaagataatctcacccttaccttag 51301644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 272
Target Start/End: Complemental strand, 2247685 - 2247649
Alignment:
Q  236 ttatgattattgagagatagtctcacccttaccttag 272  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  2247685 ttataattattgagagttagtctcacccttaccttag 2247649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 281
Target Start/End: Complemental strand, 10833327 - 10833299
Alignment:
Q  253 tagtctcacccttaccttagttttgatga 281  Q
    |||||||||||||||||||||||||||||    
T  10833327 tagtctcacccttaccttagttttgatga 10833299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 281
Target Start/End: Complemental strand, 52337990 - 52337946
Alignment:
Q  237 tatgattattgagagatagtctcacccttaccttagttttgatga 281  Q
    ||||||||||||||| ||| ||||||||||||||| || ||||||    
T  52337990 tatgattattgagagttagcctcacccttaccttaattctgatga 52337946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 14 - 277
Target Start/End: Original strand, 983 - 1238
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattat 113  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  983 catcatacacaaattcatcaattcatccaatcactcataaatttcaatcaatttatgatcacagcaacaacaa-gattaagttttcattctgaacattat 1081  T
Q  114 attataagaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccactag 213  Q
    |||| ||||| |||||||||||||||||||||| | ||||| |||| ||||||||||||||||||||||||      ||||| ||||||||||| | |||    
T  1082 attacaagagaattaacatgatcattacccatttcccttcataatcctcatcaaaccctaaccctcaattt------attttccaaaactatgcaattag 1175  T
Q  214 gtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttg 277  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1176 gtcaa-tttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttg 1238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 14 - 277
Target Start/End: Original strand, 49984 - 50239
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattat 113  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  49984 catcatacacaaattcatcaattcatccaatcactcataaatttcaatcaatttatgatcacagcaacaacaa-gattaagttttcattctgaacattat 50082  T
Q  114 attataagaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccactag 213  Q
    |||| ||||| |||||||||||||||||||||| | ||||| |||| ||||||||||||||||||||||||      ||||| ||||||||||| | |||    
T  50083 attacaagagaattaacatgatcattacccatttcccttcataatcctcatcaaaccctaaccctcaattt------attttccaaaactatgcaattag 50176  T
Q  214 gtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttg 277  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50177 gtcaa-tttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttg 50239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 173; Significance: 5e-93; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 32 - 271
Target Start/End: Original strand, 23057760 - 23057993
Alignment:
Q  32 caattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattatattataagaggattaaca 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  23057760 caattcatccaatcactcataattttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagagaattaaca 23057859  T
Q  132 tgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccactaggtcaattttcaggaatta 231  Q
    ||||||||||||||| | |||||||||| ||||||||||||||||||||||||      || || ||||||||||| | |||||||||||||||||||||    
T  23057860 tgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaattt------atcttccaaaactatgcaattaggtcaattttcaggaatta 23057953  T
Q  232 tagattatgattattgagagatagtctcacccttacctta 271  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  23057954 tagattatgattatcgagagatagtctcacccttacctta 23057993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 14 - 277
Target Start/End: Complemental strand, 29614398 - 29614141
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattat 113  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||      
T  29614398 catcatacacaaattcatcaattcatccaatcattcataaatttcaatcaagttatgatcacagcaacaacaaagattaagttttcattctaaacattca 29614299  T
Q  114 attataagaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccactag 213  Q
    || | ||||| |||||||||||||||||||||| | ||||| |||| |||||||||||||||||||||||||||||     | ||||| ||||| |||||    
T  29614298 at-acaagagaattaacatgatcattacccatttcccttcataatcatcatcaaaccctaaccctcaatttatttt-----tccaaaattatgcaactag 29614205  T
Q  214 gtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttg 277  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29614204 gtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttg 29614141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 14 - 281
Target Start/End: Original strand, 23839003 - 23839263
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattat 113  Q
    ||||||||| |  |||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||  | ||||||||||||||||||||||||||     
T  23839003 catcatacaaatcttcatcaattcatccaatcaatcataattt-caatcaatttatgatcacaacaacagtatagattaagttttcattctgaacattac 23839101  T
Q  114 attataagaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaa-actatgccacta 212  Q
    |||| || || ||||||||||||| |||||||||| ||| |||||| ||||||||||||||||||||||||      || || |||| ||||||| | ||    
T  23839102 attacaacagaattaacatgatcaatacccattcccctt-agaatcatcatcaaaccctaaccctcaattt------atcttccaaacactatgcaatta 23839194  T
Q  213 ggtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttgatga 281  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  23839195 ggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttaatttagatga 23839263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 14 - 272
Target Start/End: Complemental strand, 10986431 - 10986180
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattat 113  Q
    ||||||||| |  |||||||||||||||||||| || |||||| ||||||||||||||||||| |||||  | ||||||||||||||||||||||||||     
T  10986431 catcatacaaatcttcatcaattcatccaatcaatcgtaattt-caatcaatttatgatcacaacaacagtatagattaagttttcattctgaacattac 10986333  T
Q  114 attataagaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccactag 213  Q
    |||| || || ||||||||||||| |||||||||| | |||||||| ||||||||||||||||||||||||||      ||   |||||||||| | |||    
T  10986332 attacaacagaattaacatgatcaatacccattcc-cctcagaatcatcatcaaaccctaaccctcaatttat-----cttccaaaaactatgcaattag 10986239  T
Q  214 gtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttag 272  Q
    ||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||    
T  10986238 gtcaatttttagaaattatagattatgattattgaaagatagtctcacccttaccttag 10986180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 14 - 277
Target Start/End: Original strand, 18800242 - 18800498
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattat 113  Q
    ||||||||  || |||||||||||||||||||| | ||| |||||||||||||| |||||||| |||||| | |||||||| ||||||| ||||||| |     
T  18800242 catcataccaaacttcatcaattcatccaatcaattata-ttttcaatcaatttgtgatcacaacaacaatatagattaagatttcattttgaacatcac 18800340  T
Q  114 attataagaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccactag 213  Q
    |||| || || ||||||||||||||||| |||||| || ||||||| |||||||||||||||||||||     ||  ||||| |||||||| || | |||    
T  18800341 attacaacagaattaacatgatcattactcattcc-ctccagaatcatcatcaaaccctaaccctcaa-----ttctattttccaaaactaagcaattag 18800434  T
Q  214 gtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttg 277  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  18800435 gtcaattttcagaaattatagattatgattattgagagatagtctcacccttacattagttttg 18800498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 30 - 271
Target Start/End: Original strand, 4477678 - 4477912
Alignment:
Q  30 atcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattatattataagaggattaa 129  Q
    ||||| ||||||||||| ||||||||| ||||||||||||||||||| |||||| | |||||||||||||||||| ||||||| |||| || || ||||     
T  4477678 atcaaatcatccaatcaatcataattt-caatcaatttatgatcacaacaacaatatagattaagttttcattctaaacattacattacaacagaattag 4477776  T
Q  130 catgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccactaggtcaattttcaggaat 229  Q
    |||||||| |||||||||| | |||||||| ||||||||||||||||| ||||||||      ||   |||||||||| | ||||||||||||||| |||    
T  4477777 catgatcaatacccattcc-cctcagaatcatcatcaaaccctaacccacaatttat-----cttccaaaaactatgcaattaggtcaattttcagaaat 4477870  T
Q  230 tatagattatgattattgagagatagtctcacccttacctta 271  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  4477871 tatagattatgattattgagagatagtctcacccttacctta 4477912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 131 - 277
Target Start/End: Complemental strand, 930229 - 930090
Alignment:
Q  131 atgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccactaggtcaattttcaggaatt 230  Q
    |||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||      |||||||||| | | ||||||||||||||| || |    
T  930229 atgatcattacccattcc-cttcagaaacatcatcaaaccctaaccctcaatttatttt------tcaaaactatacaattaggtcaattttcagaaact 930137  T
Q  231 atagattatgattattgagagatagtctcacccttaccttagttttg 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  930136 atagattatgattattgagagatagtctcacccttaccttagttttg 930090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 21565462 - 21565294
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattat 113  Q
    ||||||||| || |||||||||||||||||||| | ||| |||||||||||||||||||||||||||||  | |||||||| |||||||| |||| | |     
T  21565462 catcatacagaacttcatcaattcatccaatcaattata-ttttcaatcaatttatgatcacagcaacagtatagattaagatttcattccgaacgtcac 21565364  T
Q  114 attataagaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaattt 184  Q
    |||| || |  |||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||    
T  21565363 attacaacataattaacatgatcattacccattcccctt-agaatcatcatcaaaccctaaccctcaattt 21565294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 56 - 277
Target Start/End: Complemental strand, 19786076 - 19785864
Alignment:
Q  56 ttcaatcaatttatg-atcacagcaacaacaaagattaagttttcattctgaacattatattataagaggattaacatgatcattacccattcctcttca 154  Q
    ||||||||||| ||| || ||||||||||||  ||||||| |||| |||| ||||||| |||  ||||  | |||||| ||| |||| ||||||   |||    
T  19786076 ttcaatcaattcatggattacagcaacaacatggattaagatttcgttcttaacattaaattccaagaa-actaacatcatctttactcattcca--tca 19785980  T
Q  155 gaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccactaggtcaattttcaggaattatagattatgattattgagagata 254  Q
    ||||| |||||||||||||||  ||| ||||||||       ||||||||| | ||||||||||||| ||| ||||||||||||||||||||||||||||    
T  19785979 gaatcatcatcaaaccctaactttcattttattttc------caaaactattcaactaggtcaattt-cagaaattatagattatgattattgagagata 19785887  T
Q  255 gtctcacccttaccttagttttg 277  Q
    |||||||||||||||||||||||    
T  19785886 gtctcacccttaccttagttttg 19785864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 56 - 277
Target Start/End: Original strand, 12168211 - 12168423
Alignment:
Q  56 ttcaatcaatttatg-atcacagcaacaacaaagattaagttttcattctgaacattatattataagaggattaacatgatcattacccattcctcttca 154  Q
    ||||||||||| ||| || ||||||||||||  ||||||| |||| |||| ||||||| |||  ||||  | |||||| ||| |||| ||||||   |||    
T  12168211 ttcaatcaattcatggattacagcaacaacatggattaagatttcgttcttaacattaaattccaagaa-actaacatcatctttactcattcca--tca 12168307  T
Q  155 gaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccactaggtcaattttcaggaattatagattatgattattgagagata 254  Q
    ||||| |||||||||||||||  |||  |||||||       ||||||||| | | ||||||||||| ||| ||||||||||||||||||||||||||||    
T  12168308 gaatcatcatcaaaccctaactttcatcttattttc------caaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagata 12168400  T
Q  255 gtctcacccttaccttagttttg 277  Q
    |||||||||||||||||||||||    
T  12168401 gtctcacccttaccttagttttg 12168423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 56 - 277
Target Start/End: Original strand, 19287120 - 19287332
Alignment:
Q  56 ttcaatcaatttatg-atcacagcaacaacaaagattaagttttcattctgaacattatattataagaggattaacatgatcattacccattcctcttca 154  Q
    ||||||||||| ||| || ||||||||||||  ||||||| |||| |||| ||||||| |||  ||||  | |||||| ||| |||| ||||||   |||    
T  19287120 ttcaatcaattcatggattacagcaacaacatggattaagatttcgttcttaacattaaattccaagaa-actaacatcatctttactcattcca--tca 19287216  T
Q  155 gaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccactaggtcaattttcaggaattatagattatgattattgagagata 254  Q
    ||||| |||||||||||||||  |||  |||||||       ||||||||| | | ||||||||||| ||| ||||||||||||||||||||||||||||    
T  19287217 gaatcatcatcaaaccctaactttcatcttattttc------caaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagata 19287309  T
Q  255 gtctcacccttaccttagttttg 277  Q
    |||||||||||||||||||||||    
T  19287310 gtctcacccttaccttagttttg 19287332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 56 - 277
Target Start/End: Original strand, 19878304 - 19878516
Alignment:
Q  56 ttcaatcaatttatg-atcacagcaacaacaaagattaagttttcattctgaacattatattataagaggattaacatgatcattacccattcctcttca 154  Q
    ||||||||||| ||| || ||||||||||||  ||||||| |||| |||| ||||||| |||  ||||  | |||||| ||| |||| ||||||   |||    
T  19878304 ttcaatcaattcatggattacagcaacaacatggattaagatttcgttcttaacattaaattccaagaa-actaacatcatctttactcattcca--tca 19878400  T
Q  155 gaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccactaggtcaattttcaggaattatagattatgattattgagagata 254  Q
    ||||| |||||||||||||||  |||  |||||||       ||||||||| | | ||||||||||| ||| ||||||||||||||||||||||||||||    
T  19878401 gaatcatcatcaaaccctaactttcatcttattttc------caaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagata 19878493  T
Q  255 gtctcacccttaccttagttttg 277  Q
    |||||||||||||||||||||||    
T  19878494 gtctcacccttaccttagttttg 19878516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 191 - 272
Target Start/End: Complemental strand, 34640067 - 34639986
Alignment:
Q  191 atttttcaaaactatgccactaggtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttag 272  Q
    ||||| ||||||||| | | ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  34640067 attttccaaaactattcaattaggtcaattttcagaaattatagattaagattattgagagatagtctcacccttaccttag 34639986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 56 - 277
Target Start/End: Original strand, 19884080 - 19884292
Alignment:
Q  56 ttcaatcaatttatg-atcacagcaacaacaaagattaagttttcattctgaacattatattataagaggattaacatgatcattacccattcctcttca 154  Q
    ||||||||||| ||| || ||||||||||||  ||||||| |||| |||| ||||||| |||  ||||  | |||||| ||| |||| ||||||   |||    
T  19884080 ttcaatcaattcatggattacagcaacaacatggattaagatttcgttcttaacattaaattccaagaa-actaacatcatctttactcattcca--tca 19884176  T
Q  155 gaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccactaggtcaattttcaggaattatagattatgattattgagagata 254  Q
    ||||| |||||||||||||||  |||  |||||||       ||||||||| | | ||||||||||| ||| ||||||||||||||||||||||||||||    
T  19884177 gaatcatcatcaaaccctaactttcatcttattttc------caaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagata 19884269  T
Q  255 gtctcacccttaccttagttttg 277  Q
    |||||||||| ||||||||||||    
T  19884270 gtctcaccctaaccttagttttg 19884292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 211 - 272
Target Start/End: Complemental strand, 34646721 - 34646660
Alignment:
Q  211 taggtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttag 272  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  34646721 taggtcaattttcagaaattatagattaagattattgagagatagtctcacccttaccttag 34646660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 226 - 272
Target Start/End: Complemental strand, 25469750 - 25469704
Alignment:
Q  226 gaattatagattatgattattgagagatagtctcacccttaccttag 272  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  25469750 gaattatagattatgattattgagagatagtctcacccttaccttag 25469704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 216 - 277
Target Start/End: Complemental strand, 24512899 - 24512838
Alignment:
Q  216 caattttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttg 277  Q
    |||||||||| ||||||| | |||||||||||||||||||||||||||| ||||||| ||||    
T  24512899 caattttcagaaattatatactatgattattgagagatagtctcaccctcaccttagatttg 24512838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 219 - 271
Target Start/End: Original strand, 9187498 - 9187550
Alignment:
Q  219 ttttcaggaattatagattatgattattgagagatagtctcacccttacctta 271  Q
    ||||||| ||||||  |||| ||||||||||||||||||||||||||||||||    
T  9187498 ttttcagaaattatgtattaagattattgagagatagtctcacccttacctta 9187550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 25348486 - 25348542
Alignment:
Q  215 tcaattttcaggaattatagattatgattattgagagatagtctcacccttacctta 271  Q
    ||||||||||| |||| || | ||| |||||||||||||||||||||||||||||||    
T  25348486 tcaattttcagaaattctatactattattattgagagatagtctcacccttacctta 25348542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 269
Target Start/End: Original strand, 25598643 - 25598697
Alignment:
Q  215 tcaattttcaggaattatagattatgattattgagagatagtctcacccttacct 269  Q
    ||||||||||| || |||| |||||||| |||||||| |||||||||||||||||    
T  25598643 tcaattttcagaaaatatatattatgatcattgagagttagtctcacccttacct 25598697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 281
Target Start/End: Original strand, 24441673 - 24441717
Alignment:
Q  237 tatgattattgagagatagtctcacccttaccttagttttgatga 281  Q
    ||||||||||||||| ||||||||||||||||||| ||| |||||    
T  24441673 tatgattattgagagttagtctcacccttaccttaatttagatga 24441717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 25397172 - 25397228
Alignment:
Q  215 tcaattttcaggaattatagattatgattattgagagatagtctcacccttacctta 271  Q
    ||||||||||| ||||||| |||||||| || ||||| ||| |||||||||||||||    
T  25397172 tcaattttcagaaattatatattatgatcatcgagagttagcctcacccttacctta 25397228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 281
Target Start/End: Complemental strand, 29415591 - 29415547
Alignment:
Q  237 tatgattattgagagatagtctcacccttaccttagttttgatga 281  Q
    ||||||||||||||| ||| ||||| |||||||||||||||||||    
T  29415591 tatgattattgagagttagcctcactcttaccttagttttgatga 29415547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 271
Target Start/End: Original strand, 18659450 - 18659484
Alignment:
Q  237 tatgattattgagagatagtctcacccttacctta 271  Q
    ||||||||||||||| |||||||||||||||||||    
T  18659450 tatgattattgagagttagtctcacccttacctta 18659484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 271
Target Start/End: Complemental strand, 19471391 - 19471335
Alignment:
Q  215 tcaattttcaggaattatagattatgattattgagagatagtctcacccttacctta 271  Q
    ||||||| ||| ||||||| |||||||| || ||||| ||| |||||||||||||||    
T  19471391 tcaatttccagaaattatatattatgatcatcgagaggtagcctcacccttacctta 19471335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 272
Target Start/End: Complemental strand, 28288537 - 28288509
Alignment:
Q  244 attgagagatagtctcacccttaccttag 272  Q
    |||||||||||||||||||||||||||||    
T  28288537 attgagagatagtctcacccttaccttag 28288509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0924 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: scaffold0924
Description:

Target: scaffold0924; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 14 - 277
Target Start/End: Complemental strand, 1002 - 745
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattat 113  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||| ||||||||||| || |||||||||||    
T  1002 catcatacacaaattcatcaattcatccaatcactcataaatttcaatcagtttatgatcacatcaacaacaa-gattaagtttttatcctgaacattat 904  T
Q  114 attataagaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccactag 213  Q
    |||| ||||| |||| ||||||||||||||||| | ||||| |||| ||||||||||||||||||||||||||     |||   |||||||||| | |||    
T  903 attacaagagtattatcatgatcattacccatttcccttcataatcctcatcaaaccctaaccctcaatttat-----tttccaaaaactatgcaattag 809  T
Q  214 gtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttg 277  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  808 gtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttg 745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 55 - 277
Target Start/End: Original strand, 111726 - 111943
Alignment:
Q  55 tttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattatattataagaggattaacatgatcattacccattcctcttca 154  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| | |||||    
T  111726 tttcaatcaatttatgatcacagcagcaacaaagattaagttttcattctgaacattatattacaagagaattaacatgatcattacccatttcccttca 111825  T
Q  155 gaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccactaggtcaa-ttttcaggaattatagattatgattattgagagat 253  Q
    ||||| ||||||||||||||||||||||||      || || ||||||||||| | |||||||| ||||||| |||||||||||||||||||||||||||    
T  111826 gaatcatcatcaaaccctaaccctcaattt------atcttccaaaactatgcaattaggtcaatttttcagaaattatagattatgattattgagagat 111919  T
Q  254 agtctcacccttaccttagttttg 277  Q
    ||||||||||||||||||||||||    
T  111920 agtctcacccttaccttagttttg 111943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 143; Significance: 4e-75; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 14 - 277
Target Start/End: Original strand, 23866418 - 23866675
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcactcataattttcaa-tcaatttatgatcacagcaacaacaaagattaagttttcattctgaacatta 112  Q
    |||||||||||||||||||||||||||||||||||||||| || ||| ||| |||| ||||| ||||||||||| ||||||||||  |||||||||||||    
T  23866418 catcatacacaaattcatcaattcatccaatcactcataaattccaaatcagtttacgatcagagcaacaacaa-gattaagtttatattctgaacatta 23866516  T
Q  113 tattataag-aggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccact 211  Q
    ||||| ||  || |||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||      ||||| ||||||||||| | |    
T  23866517 tattacaaatagaattaacatgatcattacccatttctcttcataatcatcatcaaaccctaaccctcaattt------attttccaaaactatgcaatt 23866610  T
Q  212 aggtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttg 277  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  23866611 aggtcaa-tttcaggaattataaattatgattattgagagatagtctcacccttaccttagttttg 23866675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 14 - 269
Target Start/End: Complemental strand, 8727984 - 8727735
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattat 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  | ||||||||||||||||||||||||||     
T  8727984 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacaacaacagtatagattaagttttcattctgaacattac 8727885  T
Q  114 attataagaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccactag 213  Q
    |||| || || ||||||||||||| ||||||| || | |||||||| || |||||||||||||||||||||||      ||   |||||||||| | |||    
T  8727884 attacaacagaattaacatgatcaatacccatacc-cctcagaatcatcgtcaaaccctaaccctcaatttat-----cttccaaaaactatgcaattag 8727791  T
Q  214 gtcaattttcaggaattatagattatgattattgagagatagtctcacccttacct 269  Q
    |||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||    
T  8727790 gtcaattttcagaaattatagattatgattattgagggataatctcacccttacct 8727735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 14 - 272
Target Start/End: Original strand, 44477428 - 44477678
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattat 113  Q
    ||||||||| |  |||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||  | |||||||||||||||||| |||||||     
T  44477428 catcatacaaatcttcatcaattcatccaatcaatcataattt-caatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattac 44477526  T
Q  114 attataagaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccactag 213  Q
     ||| || || ||||||||||||| |||||||||| | ||| |||| ||||||||||||||||||||||||      ||||| ||||||||||| | |||    
T  44477527 gttacaacagaattaacatgatcaatacccattcc-cctcaaaatcatcatcaaaccctaaccctcaattt------attttccaaaactatgcaattag 44477619  T
Q  214 gtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttag 272  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  44477620 gtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 44477678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 14 - 272
Target Start/End: Original strand, 44492586 - 44492836
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattat 113  Q
    ||||||||| |  |||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||  | |||||||||||||||||| |||||||     
T  44492586 catcatacaaatcttcatcaattcatccaatcaatcataattt-caatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattac 44492684  T
Q  114 attataagaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccactag 213  Q
     ||| || || ||||||||||||| |||||||||| | ||| |||| ||||||||||||||||||||||||      ||||| ||||||||||| | |||    
T  44492685 gttacaacagaattaacatgatcaatacccattcc-cctcaaaatcatcatcaaaccctaaccctcaattt------attttccaaaactatgcaattag 44492777  T
Q  214 gtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttag 272  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  44492778 gtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 44492836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 14 - 174
Target Start/End: Complemental strand, 27941104 - 27940946
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattat 113  Q
    ||||||||| |  |||||||||||||||||||| ||||||||| ||||||||||||||||| | |||||  | ||||||| ||||||||||||||||||     
T  27941104 catcatacaaatcttcatcaattcatccaatcaatcataattt-caatcaatttatgatcataacaacagtatagattaaattttcattctgaacattac 27941006  T
Q  114 attataagaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaa 174  Q
    |||| || || ||||||||||||| |||||||||| | |||||||| ||||||||||||||    
T  27941005 attacaacagaattaacatgatcaatacccattcc-cctcagaatcatcatcaaaccctaa 27940946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 56 - 277
Target Start/End: Original strand, 17054439 - 17054651
Alignment:
Q  56 ttcaatcaatttatg-atcacagcaacaacaaagattaagttttcattctgaacattatattataagaggattaacatgatcattacccattcctcttca 154  Q
    ||||||||||| ||| || ||||||||||||  ||||||| |||| |||| ||||||| |||  ||||  | |||||| ||| |||| ||||||   |||    
T  17054439 ttcaatcaattcatggattacagcaacaacatggattaagatttcgttcttaacattaaattccaagaa-actaacatcatctttactcattcca--tca 17054535  T
Q  155 gaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccactaggtcaattttcaggaattatagattatgattattgagagata 254  Q
    ||||| |||||||||||||||  |||  |||||||       ||||||||| | | ||||||||||| ||||||||||||||||||||||||||||||||    
T  17054536 gaatcatcatcaaaccctaactttcatcttattttc------caaaactattcaattaggtcaattt-caggaattatagattatgattattgagagata 17054628  T
Q  255 gtctcacccttaccttagttttg 277  Q
    |||||||||||||||| ||||||    
T  17054629 gtctcacccttaccttggttttg 17054651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 215 - 281
Target Start/End: Complemental strand, 23482109 - 23482043
Alignment:
Q  215 tcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttgatga 281  Q
    ||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||| ||| |||||    
T  23482109 tcaattttcagaaattatatactatgattattgagagatagtctcacccttaccttaatttagatga 23482043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 18614271 - 18614327
Alignment:
Q  215 tcaattttcaggaattatagattatgattattgagagatagtctcacccttacctta 271  Q
    ||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||    
T  18614271 tcaattttcagaaattatatatcatgattattgagagatagtctcacccttacctta 18614327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 39364919 - 39364975
Alignment:
Q  215 tcaattttcaggaattatagattatgattattgagagatagtctcacccttacctta 271  Q
    ||||||||||| |||| || | ||| |||||||||||||||||||||||||||||||    
T  39364919 tcaattttcagaaattctatactattattattgagagatagtctcacccttacctta 39364975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 29643440 - 29643386
Alignment:
Q  217 aattttcaggaattatagattatgattattgagagatagtctcacccttacctta 271  Q
    ||||||||| ||||| | |||||||||||||| ||||| ||||||||||||||||    
T  29643440 aattttcagaaattacatattatgattattgaaagataatctcacccttacctta 29643386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 277
Target Start/End: Complemental strand, 14056619 - 14056558
Alignment:
Q  216 caattttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttg 277  Q
    |||||||||| | ||| | | ||| |||||||||||||||||||||||||||||||| ||||    
T  14056619 caattttcagaatttacatactattattattgagagatagtctcacccttaccttagatttg 14056558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 277
Target Start/End: Original strand, 25111976 - 25112037
Alignment:
Q  216 caattttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttg 277  Q
    |||||||||| | ||| | | ||| |||||||||||||||||||||||||||||||| ||||    
T  25111976 caattttcagaatttacatactattattattgagagatagtctcacccttaccttagatttg 25112037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 272
Target Start/End: Complemental strand, 24320725 - 24320670
Alignment:
Q  217 aattttcaggaattatagattatgattattgagagatagtctcacccttaccttag 272  Q
    ||||||||| ||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  24320725 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 24320670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 21931696 - 21931752
Alignment:
Q  215 tcaattttcaggaattatagattatgattattgagagatagtctcacccttacctta 271  Q
    ||||||||||| | ||||| ||||| || |||||||| ||| |||||||||||||||    
T  21931696 tcaattttcagaagttatatattataatcattgagagttagcctcacccttacctta 21931752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 139; Significance: 9e-73; HSPs: 2)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 14 - 277
Target Start/End: Complemental strand, 2148 - 1892
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattat 113  Q
    |||| ||||||||||||||||||||| ||||||||||| | |||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||     
T  2148 catcgtacacaaattcatcaattcatacaatcactcatcaatttcaatcaagttatgatcacagcaacaacaaggattaagttttcattatgaacattaa 2049  T
Q  114 attataagaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccactag 213  Q
    |||| ||||| |||||||| ||||||||||||||  | ||| |||| ||||||||||||||||||||| ||      ||||| ||||||||| | | |||    
T  2048 attacaagagaattaacataatcattacccattc--catcaaaatcatcatcaaaccctaaccctcaaatt------attttccaaaactatacaattag 1957  T
Q  214 gtcaa-ttttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttg 277  Q
    ||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1956 gtcaatttttcagaaattatagattatgattattgagatatagtctcacccttaccttagttttg 1892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 14 - 277
Target Start/End: Complemental strand, 8825 - 8569
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattat 113  Q
    |||| ||||||||||||||||||||| |||||||| || | |||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||     
T  8825 catcgtacacaaattcatcaattcatacaatcacttatcaatttcaatcaagttatgatcacagcaacaacaaggattaagttttcattttgaacattaa 8726  T
Q  114 attataagaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccactag 213  Q
    |||| ||||| |||||||| ||||||||||||||  | ||| |||| ||||||||||||||||||||| ||      ||||| ||||||||| | | |||    
T  8725 attacaagagaattaacataatcattacccattc--catcataatcatcatcaaaccctaaccctcaaatt------attttccaaaactatacaattag 8634  T
Q  214 gtcaa-ttttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttg 277  Q
    ||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8633 gtcaatttttcagaaattatagattatgattattgagatatagtctcacccttaccttagttttg 8569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 26 - 269
Target Start/End: Complemental strand, 14635 - 14398
Alignment:
Q  26 attcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattatattataagagga 125  Q
    ||||||||||| ||||||||| ||||| |||||||||| |||||||||||||||||| || ||||||||||||||||| |||||| | |||| || || |    
T  14635 attcatcaatttatccaatcaatcata-ttttcaatcagtttatgatcacagcaacagcatagattaagttttcattcggaacatcacattacaacagaa 14537  T
Q  126 ttaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccactaggtcaattttcag 225  Q
    ||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||      ||   |||||||||| | |||||||||||||||    
T  14536 ttaacatgatcattacccatttcccttcagaatcatcatcaaaccctaaccctcaatttat-----cttccaaaaactatgcaattaggtcaattttcag 14442  T
Q  226 gaattatagattatgattattgagagatagtctcacccttacct 269  Q
     |||||||||||||||||||||||||||||||||||||||||||    
T  14441 aaattatagattatgattattgagagatagtctcacccttacct 14398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 14 - 281
Target Start/End: Complemental strand, 20437274 - 20437014
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattat 113  Q
    ||||||||| |  |||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||  | ||||||||||||||||||||||||||     
T  20437274 catcatacaaatcttcatcaattcatccaatcaatcataattt-caatcaatttatgatcacaacaacagtatagattaagttttcattctgaacattac 20437176  T
Q  114 attataagaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccactag 213  Q
    |||| || |  ||||||||||||| |||||||||| | |||||||| ||||||||||||||||||||||||||      ||   |||||||||| | |||    
T  20437175 attacaacataattaacatgatcaatacccattcc-cctcagaatcatcatcaaaccctaaccctcaatttat-----cttccaaaaactatgcaattag 20437082  T
Q  214 gtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttgatga 281  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  20437081 gtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttaatttagatga 20437014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 191 - 277
Target Start/End: Original strand, 41112010 - 41112095
Alignment:
Q  191 atttttcaaaactatgccactaggtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttg 277  Q
    ||||||||||||||| | | ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41112010 atttttcaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcacccttaccttagttttg 41112095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 32651571 - 32651627
Alignment:
Q  215 tcaattttcaggaattatagattatgattattgagagatagtctcacccttacctta 271  Q
    ||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||    
T  32651571 tcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 32651627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 18712798 - 18712854
Alignment:
Q  215 tcaattttcaggaattatagattatgattattgagagatagtctcacccttacctta 271  Q
    ||||||||||| ||||||| | ||||||||||||||||||||||||||| |||||||    
T  18712798 tcaattttcagaaattatatactatgattattgagagatagtctcacccatacctta 18712854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 271
Target Start/End: Complemental strand, 19663572 - 19663517
Alignment:
Q  216 caattttcaggaattatagattatgattattgagagatagtctcacccttacctta 271  Q
    |||||||||| ||||||| | ||||||||| |||||||||||||||||||||||||    
T  19663572 caattttcagaaattatatactatgattatcgagagatagtctcacccttacctta 19663517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 20805320 - 20805376
Alignment:
Q  215 tcaattttcaggaattatagattatgattattgagagatagtctcacccttacctta 271  Q
    ||||||||||| ||||||| |||||||| |||||||| ||| |||||||||||||||    
T  20805320 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttacctta 20805376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 271
Target Start/End: Original strand, 11158093 - 11158148
Alignment:
Q  216 caattttcaggaattatagattatgattattgagagatagtctcacccttacctta 271  Q
    |||||||||| ||||||| |||| ||| |||||||| |||||||||||||||||||    
T  11158093 caattttcagaaattatatattaagatcattgagagttagtctcacccttacctta 11158148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 10811839 - 10811785
Alignment:
Q  215 tcaattttcaggaattatagattatgattattgagagatagtctcacccttacct 269  Q
    ||||||||||| |||| || | ||| |||||||||||||||||||||||||||||    
T  10811839 tcaattttcagaaattctacactattattattgagagatagtctcacccttacct 10811785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 272
Target Start/End: Complemental strand, 20851187 - 20851132
Alignment:
Q  217 aattttcaggaattatagattatgattattgagagatagtctcacccttaccttag 272  Q
    ||||||||| ||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  20851187 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 20851132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 272
Target Start/End: Complemental strand, 20857814 - 20857759
Alignment:
Q  217 aattttcaggaattatagattatgattattgagagatagtctcacccttaccttag 272  Q
    ||||||||| ||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  20857814 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 20857759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 272
Target Start/End: Original strand, 21706276 - 21706331
Alignment:
Q  217 aattttcaggaattatagattatgattattgagagatagtctcacccttaccttag 272  Q
    ||||||||| ||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  21706276 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 21706331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 272
Target Start/End: Original strand, 21710818 - 21710873
Alignment:
Q  217 aattttcaggaattatagattatgattattgagagatagtctcacccttaccttag 272  Q
    ||||||||| ||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  21710818 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 21710873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 271
Target Start/End: Original strand, 24476350 - 24476380
Alignment:
Q  241 attattgagagatagtctcacccttacctta 271  Q
    |||||||||||||||||||||||||||||||    
T  24476350 attattgagagatagtctcacccttacctta 24476380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 271
Target Start/End: Complemental strand, 25091448 - 25091418
Alignment:
Q  241 attattgagagatagtctcacccttacctta 271  Q
    |||||||||||||||||||||||||||||||    
T  25091448 attattgagagatagtctcacccttacctta 25091418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 270
Target Start/End: Original strand, 18271338 - 18271371
Alignment:
Q  237 tatgattattgagagatagtctcacccttacctt 270  Q
    ||||||||||||||| ||||||||||||||||||    
T  18271338 tatgattattgagagttagtctcacccttacctt 18271371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 270
Target Start/End: Original strand, 18275992 - 18276025
Alignment:
Q  237 tatgattattgagagatagtctcacccttacctt 270  Q
    ||||||||||||||| ||||||||||||||||||    
T  18275992 tatgattattgagagttagtctcacccttacctt 18276025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 131; Significance: 5e-68; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 14 - 271
Target Start/End: Complemental strand, 19661703 - 19661454
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattat 113  Q
    ||||||||| |  |||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||| | |||||||||||||||||| |||||||     
T  19661703 catcatacaaatcttcatcaattcatccaatcaatcataattt-caatcaatttatgatcacaacaacaatatagattaagttttcattctaaacattac 19661605  T
Q  114 attataagaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccactag 213  Q
    |||| || || ||||||||||||| |||||||||| | |||||||| ||||||||||||||||||||||||      || || ||||||||||| | |||    
T  19661604 attacaacagaattaacatgatcaatacccattcc-cctcagaatcatcatcaaaccctaaccctcaattt------atcttccaaaactatgcaattag 19661512  T
Q  214 gtcaattttcaggaattatagattatgattattgagagatagtctcacccttacctta 271  Q
    |||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||    
T  19661511 gtcaattttcagaaattatagattatgattatcgagagaaagtctcacccttacctta 19661454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 14 - 281
Target Start/End: Original strand, 6483523 - 6483782
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattat 113  Q
    ||||||||| |  ||||||||||||||| |||| ||||||||| ||||||||||||||||||| |||||  | |||||||||||||||||| |||||||     
T  6483523 catcatacaaatcttcatcaattcatcccatcaatcataattt-caatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattac 6483621  T
Q  114 attataagaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccactag 213  Q
     ||| || || ||||||||||||| |||||||||| | ||| |||| ||||||||||||||||||||||||      ||||| ||||||||||| | |||    
T  6483622 gttacaacagaattaacatgatcaatacccattcc-cctcaaaatcatcatcaaaccctaaccctcaattt------attttccaaaactatgcaattag 6483714  T
Q  214 gtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttgatga 281  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  6483715 gtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttaatttagatga 6483782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 14 - 281
Target Start/End: Original strand, 6486990 - 6487249
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattat 113  Q
    ||||||||| |  ||||||||||||||| |||| ||||||||| ||||||||||||||||||| |||||  | |||||||||||||||||| |||||||     
T  6486990 catcatacaaatcttcatcaattcatcccatcaatcataattt-caatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattac 6487088  T
Q  114 attataagaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccactag 213  Q
     ||| || || ||||||||||||| |||||||||| | ||| |||| ||||||||||||||||||||||||      ||||| ||||||||||| | |||    
T  6487089 gttacaacagaattaacatgatcaatacccattcc-cctcaaaatcatcatcaaaccctaaccctcaattt------attttccaaaactatgcaattag 6487181  T
Q  214 gtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttgatga 281  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  6487182 gtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttaatttagatga 6487249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 14 - 277
Target Start/End: Original strand, 26583632 - 26583887
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattat 113  Q
    ||||||||| || |||| |||||||||||| || |  |||||   | |||| || ||||||||||||||  | |||||| |  |||||||||||||| |     
T  26583632 catcatacaaaatttcaccaattcatccaaccaattctaattacaattcaaattgtgatcacagcaacattatagattaggaattcattctgaacatcac 26583731  T
Q  114 attataagaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccactag 213  Q
     ||| || |   |||||||||||||||||| |||| || ||||||| ||||||| |||||||||||||||||||||       ||||||||||| | |||    
T  26583732 tttacaacatatttaacatgatcattaccctttcccct-cagaatcatcatcaagccctaaccctcaatttattttc------caaaactatgcaattag 26583824  T
Q  214 gtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttg 277  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26583825 gtcaattt-cagaaattatagattatgattattgagagatagtctcacccttaccttagttttg 26583887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 23089305 - 23089137
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattat 113  Q
    ||||||||| || |||||||||||||||||||| | ||| |||||||||||||||||||||||||||||  | |||||||| |||||||| |||| | |     
T  23089305 catcatacagaacttcatcaattcatccaatcaattata-ttttcaatcaatttatgatcacagcaacagtatagattaagatttcattccgaacgtcac 23089207  T
Q  114 attataagaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaattt 184  Q
    |||| || |  |||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||    
T  23089206 attacaacataattaacatgatcattacccattcccctt-agaatcatcatcaaaccctaaccctcaattt 23089137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 23101713 - 23101545
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattat 113  Q
    ||||||||| || ||||| |||||||||||||| | ||| ||||||||||||||||||||||| |||||  | |||||||| |||||||| |||| | |     
T  23101713 catcatacagaacttcatgaattcatccaatcaattata-ttttcaatcaatttatgatcacaacaacagtatagattaagatttcattccgaacgtcac 23101615  T
Q  114 attataagaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaattt 184  Q
    |||| || |  |||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||    
T  23101614 attacaacataattaacatgatcattacccattcc-cctcagaatcatcatcaaaccctaaccctcaattt 23101545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 185
Target Start/End: Original strand, 23878813 - 23878982
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattat 113  Q
    ||||||||| || |||||||||||||||||||| |  || ||||||||||||||||||||||| |||||  | |||||||| ||||||||||||||| |     
T  23878813 catcatacaaaacttcatcaattcatccaatcaattcta-ttttcaatcaatttatgatcacaacaacagtatagattaagatttcattctgaacatcac 23878911  T
Q  114 attataagaggattaacatgatcatta-cccattcctcttcagaatcgtcatcaaaccctaaccctcaattta 185  Q
    |||| || |  |||||||||||||||| |||||||| | |||||||| ||| | |||||||||||||||||||    
T  23878912 attacaacataattaacatgatcattaccccattcc-cctcagaatcatcaac-aaccctaaccctcaattta 23878982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 198 - 272
Target Start/End: Complemental strand, 5706096 - 5706023
Alignment:
Q  198 aaaactatgccactaggtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttag 272  Q
    |||||||| | | ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5706096 aaaactattcaattaggtcaattt-caggaattatagattatgattaatgagagatagtctcacccttaccttag 5706023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 21908358 - 21908414
Alignment:
Q  215 tcaattttcaggaattatagattatgattattgagagatagtctcacccttacctta 271  Q
    ||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||    
T  21908358 tcaattttcagaaattatatatcatgattattgagagatagtctcacccttacctta 21908414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 23265141 - 23265197
Alignment:
Q  215 tcaattttcaggaattatagattatgattattgagagatagtctcacccttacctta 271  Q
    ||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||    
T  23265141 tcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23265197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 23280209 - 23280265
Alignment:
Q  215 tcaattttcaggaattatagattatgattattgagagatagtctcacccttacctta 271  Q
    ||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||    
T  23280209 tcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23280265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 24661576 - 24661632
Alignment:
Q  215 tcaattttcaggaattatagattatgattattgagagatagtctcacccttacctta 271  Q
    ||||||||||| ||||||| |||||||| || ||||| ||| |||||||||||||||    
T  24661576 tcaattttcagaaattatatattatgatcatcgagagttagcctcacccttacctta 24661632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 272
Target Start/End: Original strand, 10577 - 10632
Alignment:
Q  217 aattttcaggaattatagattatgattattgagagatagtctcacccttaccttag 272  Q
    ||||||||| ||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  10577 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 10632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 272
Target Start/End: Complemental strand, 25180984 - 25180929
Alignment:
Q  217 aattttcaggaattatagattatgattattgagagatagtctcacccttaccttag 272  Q
    ||||||||| ||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  25180984 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 25180929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 269
Target Start/End: Original strand, 23879002 - 23879060
Alignment:
Q  211 taggtcaattttcaggaattatagattatgattattgagagatagtctcacccttacct 269  Q
    ||||||||||||  | ||||||| || || |||| ||||||||||||||||||||||||    
T  23879002 taggtcaatttttcgaaattatatataattattaatgagagatagtctcacccttacct 23879060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 271
Target Start/End: Complemental strand, 23101524 - 23101463
Alignment:
Q  211 taggtcaattttcaggaattatagattatg-attattgagagatagtctcacccttacctta 271  Q
    ||||||||||||| | ||||| | |||||  |||| ||||||||||||||||||||||||||    
T  23101524 taggtcaattttccgaaattacatattatctattaatgagagatagtctcacccttacctta 23101463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 272
Target Start/End: Original strand, 26885166 - 26885237
Alignment:
Q  200 aactatgccactaggtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttag 272  Q
    |||||| ||| ||| | ||||||||| ||||||| |||| ||||||||| ||||| || ||||||||||||||    
T  26885166 aactattccattagattaattttcagaaattatacatta-gattattgaaagataatcccacccttaccttag 26885237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 14 - 277
Target Start/End: Original strand, 11146 - 11402
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattat 113  Q
    ||||||||| || |||||||||||||||||||| | ||| |||||||||||||| ||||||||||||||  |  ||||||| ||||||| ||||||| |     
T  11146 catcatacaaaacttcatcaattcatccaatcaattata-ttttcaatcaatttgtgatcacagcaacagtatggattaagatttcattttgaacatcac 11244  T
Q  114 attataagaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccactag 213  Q
    |||| || || ||||||||||||||||| |||||| || ||||||| |||||||||||||||||||||     ||  ||||| |||||||| || | |||    
T  11245 attacaacagaattaacatgatcattactcattcc-ctccagaatcatcatcaaaccctaaccctcaa-----ttctattttccaaaactaagcaattag 11338  T
Q  214 gtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttg 277  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11339 gtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttg 11402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 14 - 272
Target Start/End: Complemental strand, 10446 - 10195
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattat 113  Q
    ||||||||| |  |||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||  | |||||||||||||||||| |||||||     
T  10446 catcatacaaatcttcatcaattcatccaatcaatcataattt-caatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattac 10348  T
Q  114 attataagaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccactag 213  Q
    |||| || || ||||||||||||| |||||||||| | |||||||| ||||||||||||||||| ||||||||      ||   |||||||||| | |||    
T  10347 attacaacagaattaacatgatcaatacccattcc-cctcagaatcatcatcaaaccctaacccacaatttat-----cttccaaaaactatgcaattag 10254  T
Q  214 gtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttag 272  Q
    |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  10253 gtcaattttcagaaattatagattatgattattgagagatagtcccacccttaccttag 10195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0544 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 14 - 272
Target Start/End: Complemental strand, 1776 - 1525
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattat 113  Q
    ||||||||| |  |||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||  | |||||||||||||||||| |||||||     
T  1776 catcatacaaatcttcatcaattcatccaatcaatcataattt-caatcaatttatgatcacaacaacagtatagattaagttttcattctaaacattac 1678  T
Q  114 attataagaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccactag 213  Q
    |||| || || ||||||||||||| |||||||||| | |||||||| ||||||||||||||||| ||||||||      ||   |||||||||| | |||    
T  1677 attacaacagaattaacatgatcaatacccattcc-cctcagaatcatcatcaaaccctaacccacaatttat-----cttccaaaaactatgcaattag 1584  T
Q  214 gtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttag 272  Q
    |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  1583 gtcaattttcagaaattatagattatgattattgagagatagtcccacccttaccttag 1525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 26 - 277
Target Start/End: Original strand, 109 - 351
Alignment:
Q  26 attcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattatattataagagga 125  Q
    ||||||||||| |||||| || ||||||||| ||| ||||||||||||||| ||| |||| ||||||||| |||| ||||||||  ||| || ||||  |    
T  109 attcatcaatttatccaaccaatcataattt-caaccaatttatgatcacatcaataacatagattaagtcttcaatctgaacaccataatacaagaaaa 207  T
Q  126 ttaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccactaggtcaattttcag 225  Q
    ||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||      ||||| ||||||||||| | |||||||| ||||||    
T  208 ttaacatgatcattacccattcc-cctcagaatcatcatcaaaccctaaccctcaattt------attttccaaaactatgcaattaggtcaa-tttcag 299  T
Q  226 gaattatagattatgattattgagagatagtctcacccttaccttagttttg 277  Q
     |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  300 aaattatagattatggttattgagagatagtctcacccttaccttagttttg 351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 14 - 277
Target Start/End: Original strand, 17973 - 18230
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattat 113  Q
    ||||||||| | ||||||||||| ||||||||| ||  ||||| ||||||||| |||||||||||||||||| || |||||||||||||||| |||| |     
T  17973 catcatacaaatattcatcaatttatccaatcaatccaaattt-caatcaattcatgatcacagcaacaacataggttaagttttcattctggacatcac 18071  T
Q  114 atta-taagaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaatttattttaatttttcaaaactatgccacta 212  Q
    ||||  || || |||||||||| ||||| ||||| | | | |||||| |||| ||||| ||||||||||||||||||  |     ||| ||| || | ||    
T  18072 attacaaacagaattaacatgaccatta-ccatttcccgttagaatcatcattaaaccttaaccctcaatttattttcct-----aaagctaagcaatta 18165  T
Q  213 ggtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttg 277  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18166 ggtcaattttcaaaaattatagattatgattattgagagatagtctcacccttaccttagttttg 18230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 14 - 106
Target Start/End: Original strand, 3466 - 3558
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctga 106  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3466 catcatacacaaattcatcaattcatccaatcacccataaatttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctga 3558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0476 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0476
Description:

Target: scaffold0476; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 3544 - 3375
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattat 113  Q
    ||||||||| || |||||||||||||||||||| | ||| |||||||||||||| ||||||||||||||  | |||||||| ||||||||||||||| |     
T  3544 catcatacaaaacttcatcaattcatccaatcaattata-ttttcaatcaatttgtgatcacagcaacagtatagattaagatttcattctgaacatcac 3446  T
Q  114 attataagaggattaacatga-tcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaattt 184  Q
    |||| || |  |||||||||| |||||||||||||| | |||||||| ||||||||||||||||||||||||    
T  3445 attacaacaaaattaacatgattcattacccattcc-cctcagaatcatcatcaaaccctaaccctcaattt 3375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 3872 - 3704
Alignment:
Q  14 catcatacacaaattcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacattat 113  Q
    ||||||||| || |||||||||||||||||||| | ||| ||||||||||||||||||||||| |||||  | |||||||| |||||||| |||||| |     
T  3872 catcatacaaaacttcatcaattcatccaatcaattata-ttttcaatcaatttatgatcacaacaacagtatagattaagatttcattccgaacatcac 3774  T
Q  114 attataagaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaaccctcaattt 184  Q
    |||| || |  |||||||||||||||||||| ||| | |||||||| ||||||||||||||||||||||||    
T  3773 attacaacataattaacatgatcattaccca-tccccctcagaatcatcatcaaaccctaaccctcaattt 3704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 197 - 277
Target Start/End: Original strand, 30838 - 30918
Alignment:
Q  197 caaaactatgccactaggtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttg 277  Q
    ||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30838 caaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttg 30918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0796 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: scaffold0796
Description:

Target: scaffold0796; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 75 - 277
Target Start/End: Complemental strand, 1920 - 1727
Alignment:
Q  75 cagcaacaacaaagattaagttttcattctgaacattatattataagaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaa 174  Q
    |||||||| ||  ||||||| ||||||||| ||||||| |||   |||  | |||||| ||| |||| ||||||   |||||||| ||||||||||||||    
T  1920 cagcaacagcatggattaagctttcattcttaacattaaattccgagaaaactaacatcatccttactcattcca--tcagaatcatcatcaaaccctaa 1823  T
Q  175 ccctcaatttattttaatttttcaaaactatgccactaggtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttagtt 274  Q
    |  |||   ||||   ||||| ||||||||| | | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1822 ctttca---tatt---attttccaaaactattcaattaggtcaattt-caggaattatagattatgattattgagagatagtctcacccttaccttagtt 1730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0796; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 75 - 277
Target Start/End: Complemental strand, 5943 - 5750
Alignment:
Q  75 cagcaacaacaaagattaagttttcattctgaacattatattataagaggattaacatgatcattacccattcctcttcagaatcgtcatcaaaccctaa 174  Q
    |||||||| ||  ||||||| ||||||||| ||||||| |||   |||  | |||||| ||| |||| ||||||   |||||||| ||||||||||||||    
T  5943 cagcaacagcatggattaagctttcattcttaacattaaattccgagaaaactaacatcatccttactcattcca--tcagaatcatcatcaaaccctaa 5846  T
Q  175 ccctcaatttattttaatttttcaaaactatgccactaggtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttagtt 274  Q
    |  |||   ||||   ||||| ||||||||| | | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5845 ctttca---tatt---attttccaaaactattcaattaggtcaattt-caggaattatagattatgattattgagagatagtctcacccttaccttagtt 5753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 806 - 889
Alignment:
Q  26 attcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacat 110  Q
    ||||||||||| |||||||| |||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  806 attcatcaatttatccaatccctcataattc-caatcaatttatgatcacagcaacaacacagattaagttttcattctgaacat 889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 7951 - 8034
Alignment:
Q  26 attcatcaattcatccaatcactcataattttcaatcaatttatgatcacagcaacaacaaagattaagttttcattctgaacat 110  Q
    ||||||||||| |||||||| |||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7951 attcatcaatttatccaatccctcataattc-caatcaatttatgatcacagcaacaacacagattaagttttcattctgaacat 8034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 201 - 276
Target Start/End: Original strand, 916 - 991
Alignment:
Q  201 actatgccactaggtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttagtttt 276  Q
    ||||||| | ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  916 actatgcaattaggtcaattttcagaaactatagattatgattattgagagatagtctcacccttaccttagtttt 991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 201 - 276
Target Start/End: Original strand, 8061 - 8136
Alignment:
Q  201 actatgccactaggtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttagtttt 276  Q
    ||||||| | ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  8061 actatgcaattaggtcaattttcagaaactatagattatgattattgagagatagtctcacccttaccttagtttt 8136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 198 - 277
Target Start/End: Complemental strand, 45347 - 45269
Alignment:
Q  198 aaaactatgccactaggtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttg 277  Q
    |||||||| | | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  45347 aaaactattcaattaggtcaattt-caggaattatagattatgattattgagagatagtctcacccttaccttagatttg 45269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 215 - 271
Target Start/End: Complemental strand, 101984 - 101928
Alignment:
Q  215 tcaattttcaggaattatagattatgattattgagagatagtctcacccttacctta 271  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  101984 tcaattttcaggaattatatactatgattattgagagatagtctcacccttacctta 101928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 216 - 277
Target Start/End: Complemental strand, 40587 - 40526
Alignment:
Q  216 caattttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttg 277  Q
    |||||||||| ||||||| | |||||||||||||||||||||||||||||||||||| ||||    
T  40587 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttagatttg 40526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 281
Target Start/End: Original strand, 3905 - 3949
Alignment:
Q  237 tatgattattgagagatagtctcacccttaccttagttttgatga 281  Q
    ||||||||||||||| ||| ||||||||||||||| || ||||||    
T  3905 tatgattattgagagttagcctcacccttaccttaattctgatga 3949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 216 - 272
Target Start/End: Original strand, 17643 - 17699
Alignment:
Q  216 caattttcaggaattatagattatgattattgagagatagtctcacccttaccttag 272  Q
    |||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||    
T  17643 caattttcagaaattatacattatggttattgagagatagtctcacccttaccttag 17699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 16819 - 16875
Alignment:
Q  215 tcaattttcaggaattatagattatgattattgagagatagtctcacccttacctta 271  Q
    ||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||    
T  16819 tcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 16875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 216 - 272
Target Start/End: Original strand, 135473 - 135529
Alignment:
Q  216 caattttcaggaattatagattatgattattgagagatagtctcacccttaccttag 272  Q
    |||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||    
T  135473 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttag 135529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 116895 - 116951
Alignment:
Q  215 tcaattttcaggaattatagattatgattattgagagatagtctcacccttacctta 271  Q
    ||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||    
T  116895 tcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 116951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 270
Target Start/End: Original strand, 60441 - 60474
Alignment:
Q  237 tatgattattgagagatagtctcacccttacctt 270  Q
    ||||||||||||||| ||||||||||||||||||    
T  60441 tatgattattgagagttagtctcacccttacctt 60474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 271
Target Start/End: Complemental strand, 64 - 8
Alignment:
Q  215 tcaattttcaggaattatagattatgattattgagagatagtctcacccttacctta 271  Q
    ||||||||||| ||||||  |||| ||||||||||||||||||||||||||||||||    
T  64 tcaattttcagaaattatgtattaagattattgagagatagtctcacccttacctta 8  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 22646 - 22594
Alignment:
Q  218 attttcaggaattatagattatgattattgagagatagtctcacccttacctt 270  Q
    |||||||| ||||||| | ||||||||||||||||||||||||||||||||||    
T  22646 attttcagaaattatatactatgattattgagagatagtctcacccttacctt 22594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 13631 - 13687
Alignment:
Q  215 tcaattttcaggaattatagattatgattattgagagatagtctcacccttacctta 271  Q
    ||||||||||| ||||||  |||| ||||||||||||||||||||||||||||||||    
T  13631 tcaattttcagaaattatgtattaagattattgagagatagtctcacccttacctta 13687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 271
Target Start/End: Complemental strand, 34331 - 34276
Alignment:
Q  216 caattttcaggaattatagattatgattattgagagatagtctcacccttacctta 271  Q
    |||||||||| ||||||| | ||||||||| |||||||||||||||||||||||||    
T  34331 caattttcagaaattatatactatgattatcgagagatagtctcacccttacctta 34276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 215 - 281
Target Start/End: Original strand, 12296 - 12362
Alignment:
Q  215 tcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttgatga 281  Q
    ||||||||||| ||||||| |||||||| |||||||| ||| ||||||||||||||| ||| |||||    
T  12296 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttaccttaatttagatga 12362  T

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Target: scaffold0139 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 271
Target Start/End: Complemental strand, 15052 - 14997
Alignment:
Q  216 caattttcaggaattatagattatgattattgagagatagtctcacccttacctta 271  Q
    |||||||||| ||||||| |||| ||| |||||||| |||||||||||||||||||    
T  15052 caattttcagaaattatatattaagatcattgagagttagtctcacccttacctta 14997  T

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Target: scaffold0096 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 281
Target Start/End: Complemental strand, 39563 - 39497
Alignment:
Q  215 tcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttgatga 281  Q
    ||||||||| | ||||||| |||||||| |||||||| ||| |||||||||||||| |||| |||||    
T  39563 tcaattttctgaaattatatattatgatcattgagagttagcctcacccttacctttgtttagatga 39497  T

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Target: scaffold0815 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 277
Target Start/End: Original strand, 1453 - 1510
Alignment:
Q  220 tttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttg 277  Q
    |||||| ||||||| |||| ||| |||||||| ||||||||||||||||||| |||||    
T  1453 tttcagaaattatacattaagatcattgagagttagtctcacccttaccttaattttg 1510  T

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Target: scaffold0317 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 1385 - 1441
Alignment:
Q  215 tcaattttcaggaattatagattatgattattgagagatagtctcacccttacctta 271  Q
    ||||||||||  ||||||| || ||||| ||||| ||||||||||||||||||||||    
T  1385 tcaattttcaaaaattatatatcatgatcattgaaagatagtctcacccttacctta 1441  T

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Target: scaffold0001 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 272
Target Start/End: Complemental strand, 493099 - 493028
Alignment:
Q  200 aactatgccactaggtcaattttcaggaattatagattatgattattgagagatagtctcacccttaccttag 272  Q
    |||||| ||| ||| | ||||||||| ||||||| |||| ||||||||| ||||| |||||||||||||||||    
T  493099 aactattccattagattaattttcagaaattatacatta-gattattgaaagataatctcacccttaccttag 493028  T

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Target: scaffold0348 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 272
Target Start/End: Original strand, 9336 - 9391
Alignment:
Q  217 aattttcaggaattatagattatgattattgagagatagtctcacccttaccttag 272  Q
    ||||||||| ||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  9336 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 9391  T

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Target: scaffold0127 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 272
Target Start/End: Original strand, 10239 - 10294
Alignment:
Q  217 aattttcaggaattatagattatgattattgagagatagtctcacccttaccttag 272  Q
    ||||||||| ||||| | |||||||||||||  ||||| |||||||||||||||||    
T  10239 aattttcagaaattacatattatgattattggaagataatctcacccttaccttag 10294  T

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Target: scaffold2054 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold2054
Description:

Target: scaffold2054; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 277
Target Start/End: Original strand, 717 - 775
Alignment:
Q  219 ttttcaggaattatagattatgattattgagagatagtctcacccttaccttagttttg 277  Q
    ||||||| ||||||| |||| ||| ||||| ||||| || |||||||||||||||||||    
T  717 ttttcagaaattatatattaagatcattgaaagataatcccacccttaccttagttttg 775  T

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Target: scaffold1318 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1318
Description:

Target: scaffold1318; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 1967 - 1913
Alignment:
Q  217 aattttcaggaattatagattatgattattgagagatagtctcacccttacctta 271  Q
    ||||||||| ||||||| ||||||| |||||| ||||| || |||||||||||||    
T  1967 aattttcagaaattatatattatgactattgaaagataatcccacccttacctta 1913  T

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Target: scaffold0790 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0790
Description:

Target: scaffold0790; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 277
Target Start/End: Original strand, 5480 - 5514
Alignment:
Q  243 tattgagagatagtctcacccttaccttagttttg 277  Q
    |||||| ||||||||||||||||||||||||||||    
T  5480 tattgaaagatagtctcacccttaccttagttttg 5514  T

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Target: scaffold0429 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0429
Description:

Target: scaffold0429; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 281
Target Start/End: Complemental strand, 2034 - 1990
Alignment:
Q  237 tatgattattgagagatagtctcacccttaccttagttttgatga 281  Q
    ||||||||||||||| ||| ||||||||||||||| ||| |||||    
T  2034 tatgattattgagagttagcctcacccttaccttaatttagatga 1990  T

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Target: scaffold0335 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 271
Target Start/End: Complemental strand, 2684 - 2628
Alignment:
Q  215 tcaattttcaggaattatagattatgattattgagagatagtctcacccttacctta 271  Q
    ||||||||||| | ||||| ||||| || |||||||| ||| |||||||||||||||    
T  2684 tcaattttcagaagttatatattataatcattgagagttagcctcacccttacctta 2628  T

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