View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8333_high_3 (Length: 416)
Name: NF8333_high_3
Description: NF8333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8333_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 81 - 406
Target Start/End: Original strand, 34649775 - 34650097
Alignment:
| Q |
81 |
gacaaaaagtgtccgtatacatggaacccgattccacgacatatgatgaagtaccatgcaatattnnnnnnnnnn-ttgtttatttattgagggagggca |
179 |
Q |
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| T |
34649775 |
gacaaaaagtgtctttatacatggaacccgattccacgacatatgatgaagtaccatgcaatattaaaaaaaaaaattgtttatttattgagg----gca |
34649870 |
T |
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| Q |
180 |
taggaatcaacgtcaataagtacaatttaaagacacatacgttacattttagtatttcaagattaatacattggcccctatttcaatgcttttttgtttt |
279 |
Q |
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| T |
34649871 |
taggaatcaacgtcaataagtacaatttaaagacacatacgttacattttagtatttcaagattaatacattggcccctatttcaatgcttttttgtttt |
34649970 |
T |
|
| Q |
280 |
gatttcaattttcacctccatatctcactcacattccaaccgtgtcttcctccttataaccagtaacaactgacgagaaaaacataagctccaacacaaa |
379 |
Q |
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||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34649971 |
gatttcaatttccacctccatatatcactcacattccaaccgtgtcttcctccttataaccagtaacaactgacgagaaaaacataagctccaacacaaa |
34650070 |
T |
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| Q |
380 |
caaaggaagcaatgaccaccaccaaac |
406 |
Q |
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|||||||| |||||||||||||||||| |
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| T |
34650071 |
caaaggaaacaatgaccaccaccaaac |
34650097 |
T |
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