View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8333_high_5 (Length: 330)
Name: NF8333_high_5
Description: NF8333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8333_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 20 - 314
Target Start/End: Original strand, 386331 - 386624
Alignment:
| Q |
20 |
tctagttagagcattatctcgttgaaagtcaaaatgtatcaaagaagccacaaattatcatctaaggtaactactatcctcgctcgaagtattcaaataa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
386331 |
tctagttagagcattatctcgttgaaagtcaaaatgtatcaaagaagccacaaattatcatctaaggttactactatcctcgctcgaagtattcaaataa |
386430 |
T |
|
| Q |
120 |
tcaaaacttggaaaaagttccaccttgaagatttctcaagaagattcaacaacaacaattatctgtccaaaagtgtcaaagattcaaattaaaaagaaag |
219 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
386431 |
tcaaaacttgtaaaaagttccac-ttgaagatttctcaagaagattcaacaacaataattatctgtccaaaagtgtcaaagattcaaattaaaaagaaag |
386529 |
T |
|
| Q |
220 |
ccgtacgccgactcatgcctgaaataggaactcaagaatacaacgaacttgtggaaaatcctcacaaggcttttttaaaaacaattacttcacag |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
386530 |
ccgtacgccgactcatgcctgaaataggaactcaagaatacaacgaacttgaggaaaatcctcacaaggcttttttaaaaacaattacttcacag |
386624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 228 - 314
Target Start/End: Original strand, 36926447 - 36926533
Alignment:
| Q |
228 |
cgactcatgcctgaaataggaactcaagaatacaacgaacttgtggaaaatcctcacaaggcttttttaaaaacaattacttcacag |
314 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||| |||||| ||||||||||| |||| |||||| | |||||||| ||||||||| |
|
|
| T |
36926447 |
cgactcatgcctgaaaaaggaactcaagagtacaatgaacttttggaaaatcctgacaaagcttttctgaaaacaatcacttcacag |
36926533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 229 - 314
Target Start/End: Complemental strand, 49608358 - 49608273
Alignment:
| Q |
229 |
gactcatgcctgaaataggaactcaagaatacaacgaacttgtggaaaatcctcacaaggcttttttaaaaacaattacttcacag |
314 |
Q |
| |
|
||||||||||||||| | | |||||||||||||| ||||||||||||||||| ||||| ||||||| || ||||||||||||||| |
|
|
| T |
49608358 |
gactcatgcctgaaaaaaggactcaagaatacaatcaacttgtggaaaatcctgacaagccttttttgaagacaattacttcacag |
49608273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University