View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8333_low_1 (Length: 603)
Name: NF8333_low_1
Description: NF8333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8333_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 326 - 588
Target Start/End: Original strand, 21725211 - 21725472
Alignment:
| Q |
326 |
ttagtttccactacggtgggacaactactttgattactcaacataattcgactacaacaaaccaaaataagcacatgaatggctnnnnnnncatcaggga |
425 |
Q |
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| T |
21725211 |
ttagtttccactacggtgggacaactactttgattactcaacataattcgactacaacaaaccaaaataagcacaagaatggctaaaaaa-catcaggga |
21725309 |
T |
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| Q |
426 |
aggaacaagtttgttacattaaactgatatgaaacatacaagttaatgagacggctatttagggccttgcattcctgtgttatttcctattcatccagaa |
525 |
Q |
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| T |
21725310 |
aggaacacgtttgttacattgaactgctatgaaacatacaagttaatgagacggctatttagggccatgcattcctgtgttatttcctattcatccagaa |
21725409 |
T |
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| Q |
526 |
gctcttccaaagaatagttctccttgtccaatactaccatgacccgtataacatcaacaacac |
588 |
Q |
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| T |
21725410 |
gctcttctaaagaatagttctccttgtccaatactaccacgacccgtataacatcaacaacac |
21725472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 21724899 - 21725061
Alignment:
| Q |
18 |
aaaatgaggtaaataagaaagttgaaacataagctctttttaatcaaattatttgttaaaactgcatacttgaagattcgtttgttttcagcatcaattg |
117 |
Q |
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| T |
21724899 |
aaaatgaggtaaataagaaagttgaaacataagctctttttaatcaaattatttgttaaaactgcatacttgaagatttgtttgttttcagcatcaattg |
21724998 |
T |
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| Q |
118 |
gtgattattcaacaatgtacatagtgaaacaattgctcaacctgaggcatctctcttaaactg |
180 |
Q |
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| T |
21724999 |
gtgattattcaacaatgtacatagtgaaacaattgctcaacctgaggcatctctcttaaactg |
21725061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 206 - 262
Target Start/End: Original strand, 21725088 - 21725144
Alignment:
| Q |
206 |
ttagcagttagctttcatgaaatcatctatgtaattaaacttactctcacacaatat |
262 |
Q |
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| T |
21725088 |
ttagcaattagctttcatgaaatcatctatgtaattaaacttactctcacaaaatat |
21725144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 456 - 537
Target Start/End: Complemental strand, 40334333 - 40334252
Alignment:
| Q |
456 |
gaaacatacaagttaatgagacggctatttagggccttgcattcctgtgttatttcctattcatccagaagctcttccaaag |
537 |
Q |
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| T |
40334333 |
gaaacatacaagttgataagacgactgtttaaggccttgcattcttggattacttcctcttcatctagaagctcttctaaag |
40334252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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