View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8333_low_2 (Length: 538)
Name: NF8333_low_2
Description: NF8333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8333_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 15 - 520
Target Start/End: Complemental strand, 31059418 - 31058905
Alignment:
| Q |
15 |
agagaagattgaaagagagaatcatagagtgaatgcaatagtggtgccagaagggtctcttgtgccaatgaatttcaagtgcactagggtttgggtttgg |
114 |
Q |
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| T |
31059418 |
agagaagattgaaagagagaatcatagagtgaatgcaatagtggtgccggaagggtctcttgtgccaatgaatttcaagtgcactagggtttgggtttgg |
31059319 |
T |
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| Q |
115 |
gtcgacaaagaaaggaaagtctttcgagtgccaaaaataggataactagctacccagctat------------attaatgaataagactatggggtggct |
202 |
Q |
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| T |
31059318 |
gtcgacaaagaagggaaagtctttcgagtgccaaaaataggataactagctacccagctattagtgatgcaatattaatgaataagactatggggtggct |
31059219 |
T |
|
| Q |
203 |
agctagcaaaaatgatcattatcaatgtcatcnnnnnnnnnnnn-agtgaatcttccatattcactattctaaagatatcttgaattggccttttataaa |
301 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31059218 |
agctagcaaaaatgatcattatcaatgtcatctttttttttttttagtgaatcttccatattcactattctaaagatatcttgaattggccttttataaa |
31059119 |
T |
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| Q |
302 |
tnnnnnnngctctatatatagatatcttgaacgtgaatcatgagattattgcaactgcatttattaattcattgagcatttaagctgagtagaccacaaa |
401 |
Q |
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| T |
31059118 |
taaaaaaagatctatatatagatatcttgaacctgaatcatgagattcttgcaa-----tttattaattcattgagcatttaagctgagtagaccacaaa |
31059024 |
T |
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| Q |
402 |
taatttgatcatgagattctaccgctactacaacacctaagcttaacaatgttggctgaatagcgtttcctatgatgaaacgtttaattaacaagtaata |
501 |
Q |
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| T |
31059023 |
taatttgatcatgagattctaccgctactacaacacctaagcttaacaatgttggctgaatagcgtttcctatgatgaaacgtttaattaacaagtaata |
31058924 |
T |
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| Q |
502 |
agatcttgttggtatatca |
520 |
Q |
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| T |
31058923 |
agatcttgttggtatatca |
31058905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 16 - 179
Target Start/End: Complemental strand, 31068093 - 31067930
Alignment:
| Q |
16 |
gagaagattgaaagagagaatcatagagtgaatgcaatagtggtgccagaagggtctcttgtgccaatgaatttcaagtgcactagggtttgggtttggg |
115 |
Q |
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|||||||| |||||||||||| | | ||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
31068093 |
gagaagatagaaagagagaatgagaaagtgaatgcaatagtggtgccagaagggtctgttgtgacaatggatttcaagtgcactagggtttgggtttggg |
31067994 |
T |
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| Q |
116 |
tcgacaaagaaaggaaagtctttcgagtgccaaaaataggataactagctacccagctatatta |
179 |
Q |
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| T |
31067993 |
tcgacaaacatgggagagtcactcgaatgccaaaaataggataactagctacccagctatatta |
31067930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 440 - 520
Target Start/End: Complemental strand, 31067714 - 31067630
Alignment:
| Q |
440 |
aagcttaacaatgttggctgaatagcgtttcctatgatgaaacgtt----taattaacaagtaataagatcttgttggtatatca |
520 |
Q |
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| T |
31067714 |
aagcttaacaatgttggccgaatagcgttttctctgctgaaacgtttaactaattaacaagtaacaagatcttgatggtatatca |
31067630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 194 - 231
Target Start/End: Complemental strand, 31067801 - 31067764
Alignment:
| Q |
194 |
ggggtggctagctagcaaaaatgatcattatcaatgtc |
231 |
Q |
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| T |
31067801 |
ggggtggctggctagcaaaaatgatcattatcaatgtc |
31067764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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