View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8333_low_3 (Length: 498)
Name: NF8333_low_3
Description: NF8333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8333_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 1 - 481
Target Start/End: Original strand, 38475759 - 38476253
Alignment:
| Q |
1 |
tggtgaagcgtatgaaattcttaaggtattattaatcgcgtgtt------------aattaattaaaccgataagttagagattaattaattgtttgatt |
88 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38475759 |
tggtgaagcgtatgaaattcttaaggtattattaatcgcgtgtttgatttagtattaattaattaaaccgataagttagagattaattaattgtttgatt |
38475858 |
T |
|
| Q |
89 |
attatttcttaaccgttttttgttactatttttaacagggtttggtggcgtgtccaaatgttaatgaaagaaacttgttagcagacacaacaaagataat |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38475859 |
attatttcttaaccgttttttgttactatttttaacagggtttggtggcgtgtccaaatgttaatgaaagaaacttgttagcagacacaacaaagataat |
38475958 |
T |
|
| Q |
189 |
tgagaagaacaaaactttgtgcaaacgcaaagatgataattgtagaaaatttgttattgatggattgttgagtcttggatatgatgcttcaatttgcaaa |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38475959 |
tgagaagaacaaaactttgtgcaaacgcaaagatgataattgtagaaaatttgttattgatggattgttgagtcttggatatgatgcttcaatttgcaaa |
38476058 |
T |
|
| Q |
289 |
tctcgctgggaaaaatccactttctgtatagccggtaatttctc-taactatgaaaaattcttatcaaacacttttgatcaaagacgtgtcta-ttgtcg |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
38476059 |
tctcgctgggaaaaatccactttctgtatagccggtaatttctcttaactatgaaaaattcttatcaaacacttttgatcaaagacgtgtccagttgtcg |
38476158 |
T |
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| Q |
387 |
gtgtctctctgatactcaaattttaattttttaggtgaatatgaatacattgatgtggtaattggaaaggagagggtgataattgacgttgattt |
481 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38476159 |
gtgtctctctgatactcaaattttaattttttaggtgaatatgaatacattgatgtggtaattggaaaggagagggtgataattgacgttgattt |
38476253 |
T |
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