View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8333_low_4 (Length: 476)

Name: NF8333_low_4
Description: NF8333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8333_low_4
NF8333_low_4
[»] chr3 (27 HSPs)
chr3 (72-306)||(37638610-37638844)
chr3 (72-306)||(37643984-37644218)
chr3 (72-306)||(37635696-37635930)
chr3 (72-306)||(37646897-37647131)
chr3 (72-306)||(37649810-37650044)
chr3 (22-98)||(37644220-37644296)
chr3 (22-98)||(37650046-37650122)
chr3 (22-98)||(37635932-37636008)
chr3 (22-98)||(37638846-37638922)
chr3 (22-98)||(37647133-37647209)
chr3 (392-458)||(37635542-37635608)
chr3 (392-458)||(37643831-37643897)
chr3 (392-458)||(37646744-37646810)
chr3 (392-456)||(37649659-37649723)
chr3 (392-458)||(37638456-37638522)
chr3 (392-458)||(37652577-37652643)
chr3 (19-63)||(37636002-37636046)
chr3 (19-63)||(37638916-37638960)
chr3 (19-63)||(37644290-37644334)
chr3 (19-63)||(37647203-37647247)
chr3 (19-63)||(37650116-37650160)
chr3 (136-262)||(37633284-37633405)
chr3 (248-280)||(37635691-37635723)
chr3 (248-280)||(37638605-37638637)
chr3 (248-280)||(37643979-37644011)
chr3 (248-280)||(37646892-37646924)
chr3 (248-280)||(37649805-37649837)


Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 72 - 306
Target Start/End: Complemental strand, 37638844 - 37638610
Alignment:
Q  72 tcagcatgatccaatatagtgaacaaatatctaattgcatttttaaaatggcagatatgtgaaaaatatctaattctcttctcttttctcctcattacgt 171  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  37638844 tcagcatgatccaatatagtgaacaaatatccaattgcatttttaaaatggcagatatgtgaaaaatatccaattctcttctcttttctcctcagtacgt 37638745  T
Q  172 agatgttcttctaaccaaagtagtctctcattttaatcataatgtgatctctcttgacttaaataaatgatcatacatgtatatttgaatcgacattact 271  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  37638744 agatgttcttctaaccaaaatagtctctcattttaatcataatgtgatctctcttgacttaaataaatgatcaaacatgtatatttgaattgacattact 37638645  T
Q  272 ttagataatgtatatttgaatcaacattactttag 306  Q
    |||||||||||||||||||||| ||||||||||||    
T  37638644 ttagataatgtatatttgaatcgacattactttag 37638610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 72 - 306
Target Start/End: Complemental strand, 37644218 - 37643984
Alignment:
Q  72 tcagcatgatccaatatagtgaacaaatatctaattgcatttttaaaatggcagatatgtgaaaaatatctaattctcttctcttttctcctcattacgt 171  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  37644218 tcagcatgatccaatatagtgaacaaatatccaattgcatttttaaaatggcagatatgtgaaaaatatccaattctcttctcttttctcctcagtacgt 37644119  T
Q  172 agatgttcttctaaccaaagtagtctctcattttaatcataatgtgatctctcttgacttaaataaatgatcatacatgtatatttgaatcgacattact 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||    
T  37644118 agatgttcttctaaccaaagtagtctctcattttaatcataatgtgatctctcttgacttaaataaattatcaaacatgtatatttgaattgacattact 37644019  T
Q  272 ttagataatgtatatttgaatcaacattactttag 306  Q
    |||||||||||||||||||||| ||||||||||||    
T  37644018 ttagataatgtatatttgaatcgacattactttag 37643984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 72 - 306
Target Start/End: Complemental strand, 37635930 - 37635696
Alignment:
Q  72 tcagcatgatccaatatagtgaacaaatatctaattgcatttttaaaatggcagatatgtgaaaaatatctaattctcttctcttttctcctcattacgt 171  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  37635930 tcagcatgatccaatatagtgaacaaatatccaattgcatttttaaaatggcagatatgtgaaaaatatccaattctcttctcttttctcctcagtacgt 37635831  T
Q  172 agatgttcttctaaccaaagtagtctctcattttaatcataatgtgatctctcttgacttaaataaatgatcatacatgtatatttgaatcgacattact 271  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  37635830 agatgttcttctaaccaaaatagtctctcaatttaatcataatgtgatctctcttgacttaaataaatgatcaaacatgtatatttgaattgacattact 37635731  T
Q  272 ttagataatgtatatttgaatcaacattactttag 306  Q
    |||||||||||||||||||||| ||||||||||||    
T  37635730 ttagataatgtatatttgaatcgacattactttag 37635696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 72 - 306
Target Start/End: Complemental strand, 37647131 - 37646897
Alignment:
Q  72 tcagcatgatccaatatagtgaacaaatatctaattgcatttttaaaatggcagatatgtgaaaaatatctaattctcttctcttttctcctcattacgt 171  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||    
T  37647131 tcagcatgatccaatatagtgaacaaatatccaattgcatttttaaaatggcagatatgtgaaaaatatccaattctcttctattttctcctcagtacgt 37647032  T
Q  172 agatgttcttctaaccaaagtagtctctcattttaatcataatgtgatctctcttgacttaaataaatgatcatacatgtatatttgaatcgacattact 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||    
T  37647031 agatgttcttctaaccaaagtagtctctcattttaatcataatgtgatctctcttgacttaaataaatgatcaaacatgtatatttaaattgacattact 37646932  T
Q  272 ttagataatgtatatttgaatcaacattactttag 306  Q
    |||||||||||||||||||||| ||||||||||||    
T  37646931 ttagataatgtatatttgaatcgacattactttag 37646897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 72 - 306
Target Start/End: Complemental strand, 37650044 - 37649810
Alignment:
Q  72 tcagcatgatccaatatagtgaacaaatatctaattgcatttttaaaatggcagatatgtgaaaaatatctaattctcttctcttttctcctcattacgt 171  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||| |||||    
T  37650044 tcagcatgatccaatatagtgaacaaatatccaatagcatttttaaaatggtagatatgtgaaaaatatccaattctcttctcatttctcctcagtacgt 37649945  T
Q  172 agatgttcttctaaccaaagtagtctctcattttaatcataatgtgatctctcttgacttaaataaatgatcatacatgtatatttgaatcgacattact 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||    
T  37649944 agatgttcttctaaccaaagtagtctctcattttaatcataatgtgatctctcttgacttaaataaatgatcaaacaggtatatttgaattgacattact 37649845  T
Q  272 ttagataatgtatatttgaatcaacattactttag 306  Q
    |||||||||||||||||||||| ||||||||||||    
T  37649844 ttagataatgtatatttgaatcgacattactttag 37649810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 22 - 98
Target Start/End: Complemental strand, 37644296 - 37644220
Alignment:
Q  22 ccaacaatggaaaatgaagacacatatgtcttaaaccaacaactcaaacttcagcatgatccaatatagtgaacaaa 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37644296 ccaacaatggaaaatgaagacacatatgtcttaaaccaacaactcaaacttcagcatgatccaatatagtgaacaaa 37644220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 22 - 98
Target Start/End: Complemental strand, 37650122 - 37650046
Alignment:
Q  22 ccaacaatggaaaatgaagacacatatgtcttaaaccaacaactcaaacttcagcatgatccaatatagtgaacaaa 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37650122 ccaacaatggaaaatgaagacacatatgtcttaaaccaacaactcaaacttcagcatgatccaatatagtgaacaaa 37650046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 22 - 98
Target Start/End: Complemental strand, 37636008 - 37635932
Alignment:
Q  22 ccaacaatggaaaatgaagacacatatgtcttaaaccaacaactcaaacttcagcatgatccaatatagtgaacaaa 98  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  37636008 ccaacaatggaaaatgaagacacatatgtcttaaacccacaactcaaacttcagcatgatccaatatagtgaacaaa 37635932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 22 - 98
Target Start/End: Complemental strand, 37638922 - 37638846
Alignment:
Q  22 ccaacaatggaaaatgaagacacatatgtcttaaaccaacaactcaaacttcagcatgatccaatatagtgaacaaa 98  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  37638922 ccaacaatggaaaatgaagacacatatgtcttaaacccacaactcaaacttcagcatgatccaatatagtgaacaaa 37638846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 22 - 98
Target Start/End: Complemental strand, 37647209 - 37647133
Alignment:
Q  22 ccaacaatggaaaatgaagacacatatgtcttaaaccaacaactcaaacttcagcatgatccaatatagtgaacaaa 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  37647209 ccaacaatggaaaatgaagacacatatgtcttaaaccaacaactcaaacttttgcatgatccaatatagtgaacaaa 37647133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 392 - 458
Target Start/End: Complemental strand, 37635608 - 37635542
Alignment:
Q  392 gagaagtaaagcgttcaataaggaattcaagatcagaaaattaagggaaaccaaagatgtttgaatg 458  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  37635608 gagaagtagagcgttcaataaggaattcacgatcagaaaattaagggaaaccaaagatgtttgaatg 37635542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 392 - 458
Target Start/End: Complemental strand, 37643897 - 37643831
Alignment:
Q  392 gagaagtaaagcgttcaataaggaattcaagatcagaaaattaagggaaaccaaagatgtttgaatg 458  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  37643897 gagaagtagagcgttcaataaggaattcacgatcagaaaattaagggaaaccaaagatgtttgaatg 37643831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 392 - 458
Target Start/End: Complemental strand, 37646810 - 37646744
Alignment:
Q  392 gagaagtaaagcgttcaataaggaattcaagatcagaaaattaagggaaaccaaagatgtttgaatg 458  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  37646810 gagaagtagagcgttcaataaggaattcacgatcagaaaattaagggaaaccaaagatgtttgaatg 37646744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 392 - 456
Target Start/End: Complemental strand, 37649723 - 37649659
Alignment:
Q  392 gagaagtaaagcgttcaataaggaattcaagatcagaaaattaagggaaaccaaagatgtttgaa 456  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  37649723 gagaagtagagcgttcaataaggaattcacgatcagaaaattaagggaaaccaaagatgtttgaa 37649659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 392 - 458
Target Start/End: Complemental strand, 37638522 - 37638456
Alignment:
Q  392 gagaagtaaagcgttcaataaggaattcaagatcagaaaattaagggaaaccaaagatgtttgaatg 458  Q
    |||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  37638522 gagaagtagagtgttcaataaggaattcacgatcagaaaattaagggaaaccaaagatgtttgaatg 37638456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 392 - 458
Target Start/End: Complemental strand, 37652643 - 37652577
Alignment:
Q  392 gagaagtaaagcgttcaataaggaattcaagatcagaaaattaagggaaaccaaagatgtttgaatg 458  Q
    |||||||| ||||||||| |||||||||||||||| ||||||  |||||||||||||| ||||||||    
T  37652643 gagaagtagagcgttcaacaaggaattcaagatcacaaaatttcgggaaaccaaagatttttgaatg 37652577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 37636046 - 37636002
Alignment:
Q  19 gatccaacaatggaaaatgaagacacatatgtcttaaaccaacaa 63  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  37636046 gatccaacaatggaaaatgaagatacatatgtcttaaaccaacaa 37636002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 37638960 - 37638916
Alignment:
Q  19 gatccaacaatggaaaatgaagacacatatgtcttaaaccaacaa 63  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  37638960 gatccaacaatggaaaatgaagatacatatgtcttaaaccaacaa 37638916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 37644334 - 37644290
Alignment:
Q  19 gatccaacaatggaaaatgaagacacatatgtcttaaaccaacaa 63  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  37644334 gatccaacaatggaaaatgaagatacatatgtcttaaaccaacaa 37644290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 37647247 - 37647203
Alignment:
Q  19 gatccaacaatggaaaatgaagacacatatgtcttaaaccaacaa 63  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  37647247 gatccaacaatggaaaatgaagatacatatgtcttaaaccaacaa 37647203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 37650160 - 37650116
Alignment:
Q  19 gatccaacaatggaaaatgaagacacatatgtcttaaaccaacaa 63  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  37650160 gatccaacaatggaaaatgaagatacatatgtcttaaaccaacaa 37650116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 136 - 262
Target Start/End: Complemental strand, 37633405 - 37633284
Alignment:
Q  136 aatatctaattctcttctcttttctcctcattacgtagatgttcttctaaccaaagtagtctctcattttaatcataatgtgatctctcttgacttaaat 235  Q
    |||||| ||||||||||||||||||||| |    |||||||||||||||| |||| ||  ||||||||||||| ||||| ||||  ||||| | ||||||    
T  37633405 aatatccaattctcttctcttttctcctta----gtagatgttcttctaatcaaaatacgctctcattttaattataatatgattcctcttaaattaaat 37633310  T
Q  236 aaatgatcatacatgtatatttgaatc 262  Q
     |||||||| ||  ||||||| |||||    
T  37633309 -aatgatcaaacgcgtatattcgaatc 37633284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 248 - 280
Target Start/End: Complemental strand, 37635723 - 37635691
Alignment:
Q  248 atgtatatttgaatcgacattactttagataat 280  Q
    |||||||||||||||||||||||||||||||||    
T  37635723 atgtatatttgaatcgacattactttagataat 37635691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 248 - 280
Target Start/End: Complemental strand, 37638637 - 37638605
Alignment:
Q  248 atgtatatttgaatcgacattactttagataat 280  Q
    |||||||||||||||||||||||||||||||||    
T  37638637 atgtatatttgaatcgacattactttagataat 37638605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 248 - 280
Target Start/End: Complemental strand, 37644011 - 37643979
Alignment:
Q  248 atgtatatttgaatcgacattactttagataat 280  Q
    |||||||||||||||||||||||||||||||||    
T  37644011 atgtatatttgaatcgacattactttagataat 37643979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 248 - 280
Target Start/End: Complemental strand, 37646924 - 37646892
Alignment:
Q  248 atgtatatttgaatcgacattactttagataat 280  Q
    |||||||||||||||||||||||||||||||||    
T  37646924 atgtatatttgaatcgacattactttagataat 37646892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 248 - 280
Target Start/End: Complemental strand, 37649837 - 37649805
Alignment:
Q  248 atgtatatttgaatcgacattactttagataat 280  Q
    |||||||||||||||||||||||||||||||||    
T  37649837 atgtatatttgaatcgacattactttagataat 37649805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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