View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8333_low_5 (Length: 457)
Name: NF8333_low_5
Description: NF8333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8333_low_5 |
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| [»] scaffold0896 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Original strand, 4149575 - 4150012
Alignment:
| Q |
1 |
aattgtgtgttacttctcatactgtcggttttgaacaccaaagaggccgttcaaacctgtgttctgtccgcgagatggaagaatctctggaagtatattc |
100 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||| |
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| T |
4149575 |
aattgtgtgttacttctcatactgtcgattttgaacaccaaagaggccgttcaaacctgcgttttgtccacgagatggaagaatctctggaagtatattc |
4149674 |
T |
|
| Q |
101 |
ctgttctttcaataagttgttgccacttcgagactcggaagggtttcatcagattcgtgtctcaatttttgtatctacgtgataacaaaaccgcactgca |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4149675 |
ctgttctttcaataagttcttgccacttcgagactcggatgggtttcaccatattcgtgtatcaatttttgtatctacgtgataacaaaaccgcactgca |
4149774 |
T |
|
| Q |
201 |
cactctccatcttcaccgcgaaggtgtcatctggcctcgccacctcaagtgggttataaaatatgcatttgaccacggtgtccagctattagatgtagat |
300 |
Q |
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|
||||||| ||||||||||||| ||||||||||||||| || ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4149775 |
cactctcgatcttcaccgcgatggtgtcatctggcctggctacctcaactgggttataaaatacgcatttgaccacggtgtccagctattagatgtagat |
4149874 |
T |
|
| Q |
301 |
tcgacctttaatcatcaacactatccacttccctgcgtttcatgtgacactttaacatctcttaccctttgtagaaacgatcaattttgttatcattcac |
400 |
Q |
| |
|
||||||||| || ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||| |||||||| || ||| |||| |
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| T |
4149875 |
tcgaccttttattatcaacactatccacttccctacgtttcatgtcacactttaacatctcttaccctttgtacaaacaatcaatttggtcatccttcat |
4149974 |
T |
|
| Q |
401 |
cattattcccaacttctctgaatttgcctgcattaacc |
438 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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|
| T |
4149975 |
cattattcccaacttctctgaatttgcctgcattaacc |
4150012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Original strand, 4165347 - 4165784
Alignment:
| Q |
1 |
aattgtgtgttacttctcatactgtcggttttgaacaccaaagaggccgttcaaacctgtgttctgtccgcgagatggaagaatctctggaagtatattc |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||| |
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|
| T |
4165347 |
aattgtgtgttacttctcatactgtcgattttgaacaccaaagaggccgttcaaacctgcgttttgtccacgagatggaagaatctctggaagtatattc |
4165446 |
T |
|
| Q |
101 |
ctgttctttcaataagttgttgccacttcgagactcggaagggtttcatcagattcgtgtctcaatttttgtatctacgtgataacaaaaccgcactgca |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4165447 |
ctgttctttcaataagttcttgccacttcgagactcggatgggtttcaccatattcgtgtatcaatttttgtatctacgtgataacaaaaccgcactgca |
4165546 |
T |
|
| Q |
201 |
cactctccatcttcaccgcgaaggtgtcatctggcctcgccacctcaagtgggttataaaatatgcatttgaccacggtgtccagctattagatgtagat |
300 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||| || |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
4165547 |
cactctcgatcttcaccgcgatggtgtcatctggcctggctacctcatgtgggttataaaatacgcatttgaccacggtgtccagctattagatgtagat |
4165646 |
T |
|
| Q |
301 |
tcgacctttaatcatcaacactatccacttccctgcgtttcatgtgacactttaacatctcttaccctttgtagaaacgatcaattttgttatcattcac |
400 |
Q |
| |
|
||||||||| || ||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||| |||| |||||||| || ||| |||| |
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| T |
4165647 |
tcgaccttttattatcaacactatccacttccctacgttttatgtcacactttaacatctcttaccctttgtacaaacaatcaatttggtcatccttcat |
4165746 |
T |
|
| Q |
401 |
cattattcccaacttctctgaatttgcctgcattaacc |
438 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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|
| T |
4165747 |
cattattcccaacttctctgaatttgcctgcattaacc |
4165784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 2 - 94
Target Start/End: Complemental strand, 7115635 - 7115543
Alignment:
| Q |
2 |
attgtgtgttacttctcatactgtcggttttgaacaccaaagaggccgttcaaacctgtgttctgtccgcgagatggaagaatctctggaagt |
94 |
Q |
| |
|
||||||| ||||||| |||||| || |||||||||||||| | || |||||||| |||||| ||||| |||||||||||||||||||||| |
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|
| T |
7115635 |
attgtgttttacttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctggaagt |
7115543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 2 - 94
Target Start/End: Complemental strand, 7120707 - 7120615
Alignment:
| Q |
2 |
attgtgtgttacttctcatactgtcggttttgaacaccaaagaggccgttcaaacctgtgttctgtccgcgagatggaagaatctctggaagt |
94 |
Q |
| |
|
||||||| ||||||| |||||| || |||||||||||||| | || |||||||| |||||| ||||| |||||||||||||||||||||| |
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| T |
7120707 |
attgtgttttacttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctggaagt |
7120615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 2 - 94
Target Start/End: Complemental strand, 7124111 - 7124019
Alignment:
| Q |
2 |
attgtgtgttacttctcatactgtcggttttgaacaccaaagaggccgttcaaacctgtgttctgtccgcgagatggaagaatctctggaagt |
94 |
Q |
| |
|
||||||| ||||||| |||||| || |||||||||||||| | || |||||||| |||||| ||||| |||||||||||||||||||||| |
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| T |
7124111 |
attgtgttttacttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctggaagt |
7124019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 8656740 - 8656649
Alignment:
| Q |
2 |
attgtgtgttacttctcatactgtcggttttgaacaccaaagaggccgttcaaacctgtgttctgtccgcgagatggaagaatctctggaag |
93 |
Q |
| |
|
||||||| ||||||| |||||| || |||||||||||||| | || |||||||| |||||| || || ||||||||||||||||||||| |
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|
| T |
8656740 |
attgtgttttacttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttggccaaaagatggaagaatctctggaag |
8656649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 32413613 - 32413704
Alignment:
| Q |
2 |
attgtgtgttacttctcatactgtcggttttgaacaccaaagaggccgttcaaacctgtgttctgtccgcgagatggaagaatctctggaag |
93 |
Q |
| |
|
||||||| ||||||| |||||| || ||||||||||||| | ||||||||||| || || ||||| | ||||||||||||||||||||| |
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|
| T |
32413613 |
attgtgttttacttcacatactctcctctttgaacaccaaacacgccgttcaaacttgcattttgtccacaagatggaagaatctctggaag |
32413704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 19658395 - 19658349
Alignment:
| Q |
46 |
gccgttcaaacctgtgttctgtccgcgagatggaagaatctctggaa |
92 |
Q |
| |
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||||||||||| |||||| ||||| ||||||||| |||||||||||| |
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| T |
19658395 |
gccgttcaaacttgtgttttgtccacgagatggaggaatctctggaa |
19658349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 19675234 - 19675188
Alignment:
| Q |
46 |
gccgttcaaacctgtgttctgtccgcgagatggaagaatctctggaa |
92 |
Q |
| |
|
||||||||||| |||||| ||||| ||||||||| |||||||||||| |
|
|
| T |
19675234 |
gccgttcaaacttgtgttttgtccacgagatggaggaatctctggaa |
19675188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0896 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0896
Description:
Target: scaffold0896; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 2256 - 2321
Alignment:
| Q |
29 |
ttttgaacaccaaagaggccgttcaaacctgtgttctgtccgcgagatggaagaatctctggaagt |
94 |
Q |
| |
|
|||||||||||||| | || |||||||| |||||| || || |||||||||||||||||||||| |
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|
| T |
2256 |
ttttgaacaccaaatacgcagttcaaacttgtgttttggccaaaagatggaagaatctctggaagt |
2321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0896; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 1473 - 1537
Alignment:
| Q |
29 |
ttttgaacaccaaagaggccgttcaaacctgtgttctgtccgcgagatggaagaatctctggaag |
93 |
Q |
| |
|
|||||||||||||| | || |||||||| |||||| || || ||||||||||||||||||||| |
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|
| T |
1473 |
ttttgaacaccaaatacgcagttcaaacttgtgttttggccaaaagatggaagaatctctggaag |
1537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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