View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8333_low_7 (Length: 372)
Name: NF8333_low_7
Description: NF8333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8333_low_7 |
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| [»] scaffold0449 (1 HSPs) |
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Alignment Details
Target: scaffold0449 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: scaffold0449
Description:
Target: scaffold0449; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 3739 - 4111
Alignment:
| Q |
1 |
atataaatgaaaataacaatgatactgagtaaataaacaagatgcatgctagccacatacatcaaa-gggggcagcaacaacagtagagagtagatagag |
99 |
Q |
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| T |
3739 |
atataaatgaaaataacaatgatactgggtaaataaacaagttgcatgctagccacatacatcaaaagggggcagcaacaacagtagagagtagatagag |
3838 |
T |
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| Q |
100 |
tatagttatagtgaaagtggagaggccaagatctttgagaggaatgacatattggagcatgagcagcgcgtaaaagcaccatccaaagaaaaatagaaaa |
199 |
Q |
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| T |
3839 |
tatagttgtagtgaaagtggagaggccaagatctttgagaggaatgacatattggagcatgagcagcgcgtaaaagcaccatccaaagaaaaatagaaaa |
3938 |
T |
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| Q |
200 |
tcacatatcaaagttatggcgcggcggctggtccaggttgggcagagcattagggttttcttgaggatgattgagagaatgtaacatacaaatgacgacg |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3939 |
tcacatatcaaagttatggcgcggcggctggtccaggttgggcagagcattagggttttcttgaggatgattgagagaatgtaacatacaaatgacgacg |
4038 |
T |
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| Q |
300 |
cagcaaatatcgtaaactctttcactatctctgatgcgggagggtcatatgagaagaaactcatgcaaaggcc |
372 |
Q |
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| T |
4039 |
cagcaaatatcgtaaactctttcactatctctgatgtgggagggtcatatgagaagaaactcatgcaaaggcc |
4111 |
T |
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