View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8334_high_1 (Length: 1001)
Name: NF8334_high_1
Description: NF8334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8334_high_1 |
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| [»] scaffold0189 (3 HSPs) |
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Alignment Details
Target: scaffold0189 (Bit Score: 680; Significance: 0; HSPs: 3)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 680; E-Value: 0
Query Start/End: Original strand, 17 - 708
Target Start/End: Complemental strand, 14783 - 14092
Alignment:
| Q |
17 |
ttctacaatagtgctataaataactaaaacaaacaatcaacaatgaatatcaaaataacatgaacaacttataatttaaactacactatattgactttga |
116 |
Q |
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| T |
14783 |
ttctacaatagtgctataaataactaaaacaaacaatcaacaatgaatatcaaaataacatgaacaacttataatttaaactacactatattgactttga |
14684 |
T |
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| Q |
117 |
aacaccaattcaaatcaatcttaccacgacactgggacataaaattttcttaatcagctttgagtctccacccatatgcagcacgttccatattcttcta |
216 |
Q |
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| T |
14683 |
aacaccaattcaaatcaatcttaccacaacactgggacataaaattttcttaatcagctttgactctccacccatatgcagcacgttccatattcttcta |
14584 |
T |
|
| Q |
217 |
ttaggtgttatcttcgtcaagaatataataaacaaagatttttgccccatttcatcaatgtcaatgtcttcagaagcaatcactttaaaagtaggcataa |
316 |
Q |
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| T |
14583 |
ttaggtgttatattcgtcaagaatataataaacaaagatttttgccccatttcatcaatgtcaatgtcttcagaagcaatcactttaaaagtaggcataa |
14484 |
T |
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| Q |
317 |
gtttagtatcatcatcttcgccttggatctcctcatctagaaaaccagccgacaacacaaaactccacgttcttcctgacctttgcaaatcattaaccgt |
416 |
Q |
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| T |
14483 |
gtttagtatcatcatcttcgccttggatctcctcatctagaaaaccagccgacaacacaaaactccacgttcttcctgacctttgcaaatcattaaccgt |
14384 |
T |
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| Q |
417 |
ttcaggtttaaaatctgccaaaataaaaacatcgccaaacaatgttttgtataactcttttccatgaccagaggacctgtttttccaagtatcagtttta |
516 |
Q |
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| T |
14383 |
ttcaggtttaaaatctgccaaaataaaaacatcgccaaacaatgttttgtataactcttttccatgaccagaggacctgtttttccaagtatcagtttta |
14284 |
T |
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| Q |
517 |
acgacgtagtgattcctaccatatgaatgtgatcttgactcctcaagtgaaatcacttctgcataaggtgaagttgacaaaatttccatggaagaacata |
616 |
Q |
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| T |
14283 |
acgacgtagtgattcctaccatatgaatgtgatcttgactcctcaagtgaaatcacttctgcataaggtgaagttgacaaaatttccatggaagaacata |
14184 |
T |
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| Q |
617 |
gttgtgctcgagtttcatccaataaaggatacacaaatgacttaaaatattgttcactagaactgaataataaatcgatataatccatctac |
708 |
Q |
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| T |
14183 |
gttgtgctcgagtttcatccaataaaggatacacaaatgacttaaaatattgttcactagaactgaataataaatcgatataatccatctac |
14092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0189; HSP #2
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 873 - 985
Target Start/End: Complemental strand, 13993 - 13881
Alignment:
| Q |
873 |
atagtaactagcattcttcttccttgaagttgaacggttcattgtgttttcttcctaactaagaatctcaagagttttcacttcatgaaacactgaactg |
972 |
Q |
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| T |
13993 |
atagtaactagcattcttcttccttgaagttgaacggttcattgtgttttcttcctaactaagaatctcaagagttttcacttcaagaaacactgaactg |
13894 |
T |
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| Q |
973 |
atgagtggaaact |
985 |
Q |
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| T |
13893 |
atgagtggaaact |
13881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0189; HSP #3
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 756 - 808
Target Start/End: Complemental strand, 14045 - 13993
Alignment:
| Q |
756 |
tgataatgtgatagagtaagagaaagaagttttcaaaaccttgtttttgtaaa |
808 |
Q |
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| T |
14045 |
tgataatgtgatagagtaagagaaagaagttttcaaaaccttgtttttgtaaa |
13993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 807 - 868
Target Start/End: Original strand, 34632504 - 34632565
Alignment:
| Q |
807 |
aagatcttggttgaaaatgtcttgaagagaccaagaaaacatggcgttgatgaagttttgat |
868 |
Q |
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|||||| ||||||||||| |||||||||||||||||||| || | |||||||||||| |||| |
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| T |
34632504 |
aagatcatggttgaaaatttcttgaagagaccaagaaaaaatagtgttgatgaagttatgat |
34632565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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