View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8334_high_4 (Length: 626)
Name: NF8334_high_4
Description: NF8334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8334_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 548; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 18 - 608
Target Start/End: Original strand, 4584435 - 4585026
Alignment:
| Q |
18 |
ttctcaagagttttgaaagctgttttagtacaatgtgacaaatcctgtcaaagaatatgtagaatgagattaatctagacaaatgttttaccctgtcatg |
117 |
Q |
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| T |
4584435 |
ttctcaagagttttgaaagctgtttcagtacaatgtgacaaatcctgtcaaagaatatgtagaatgagattaatctagacaaatattttaccctgtcatg |
4584534 |
T |
|
| Q |
118 |
atttgcagtcagcatttcctactgttgtaatctcggccatatatgaagatcagatggttataattttaagttttatgtaaatccgatttcaaaattcaaa |
217 |
Q |
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| T |
4584535 |
atttgcagtcagcatttcctactgttgtaatctcggccatatatgaagatcggatggttataattttaagttttatgtaaatccgatttcaaaattcaaa |
4584634 |
T |
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| Q |
218 |
acacaaactgtccgtatttcatctaacattccataatgttagcaatctggattcaatcttagtgactgcattcaatctggattgataatattagtattcc |
317 |
Q |
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| T |
4584635 |
acacaaactgtccgtatttcatctaacattccataatgtcagcaatctggattcaatcttagtgactgcattcaatctggattgataatattagtattcc |
4584734 |
T |
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| Q |
318 |
ataatgtacagatgtagcagacgaagttgatgcgttttcgtattaaactagttccaattaaagtagctatataccatttatgattttaaatcacagtccg |
417 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4584735 |
ataatgcacagatgtagcagacgaagttgatgcgttttcgtattaaactagttccgattaaagtagctatataccacttatgattttaaatcacagtccg |
4584834 |
T |
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| Q |
418 |
cagccataatgcagacgtagtataacatattttgagatctttgcaacgtcattgcagcagttatcttgactgtatcatccacagtttgccgtaatataaa |
517 |
Q |
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| T |
4584835 |
cagccataatgcagacgtagtataacatattttgagatctttgcaacgtcattgcagcagttatcttgactgtatcgtccacagtttgccgtaatataaa |
4584934 |
T |
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| Q |
518 |
ggttggcaatgtaaccgcgtcagtaaattaaaagcatgataccactaaaaatggaactaaaatgaaaatctgaaagcttgat-atccctaat |
608 |
Q |
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| T |
4584935 |
ggttggcaatgtaaccgcgtcagtaaattaaaagcatgataccagtaaaaatggaactaaaatgaaaatctgaaagcttgataatccctaat |
4585026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 4592179 - 4592269
Alignment:
| Q |
18 |
ttctcaagagttttgaaagctgttttagtacaatgtgacaaatcctgtcaaagaatatgtagaatgagattaatctagacaaatgttttac |
108 |
Q |
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| T |
4592179 |
ttctcaagagttttgaaagctgtttcagtacaatgagacatatcctgtcaaagaatatgtagaatgagattaatctagaccaatgttttac |
4592269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 4573208 - 4573293
Alignment:
| Q |
18 |
ttctcaagagttttgaaagctgttttagtacaatgtgacaaatcctgtcaaagaatatgtagaatgagattaatctagacaaatgt |
103 |
Q |
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| T |
4573208 |
ttctcaacagtttggaaagctgtttcagtacaatgtgatatatcctgtcaaagaatatgtaggatgagattaatctagaccaatgt |
4573293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 280 - 370
Target Start/End: Original strand, 4592482 - 4592571
Alignment:
| Q |
280 |
tgactgcattcaatctggattgataatattagtattccataatgtacagatgtagcagacgaagttgatgcgttttcgtattaaactagtt |
370 |
Q |
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| T |
4592482 |
tgactgcagtcaatctggatcgatagtat-agtattccataatgtacagatgtagcagaccaagttgatgtgtttttatattaaactagtt |
4592571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 4600618 - 4600682
Alignment:
| Q |
23 |
aagagttttgaaagctgttttagtacaatgtgacaaatcctgtcaaagaatatgtagaatgagat |
87 |
Q |
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| T |
4600618 |
aagagttttgaaagttgtttcagtacaatgtgacaggttctgtcaaagaatatgtagaatgagat |
4600682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 108 - 159
Target Start/End: Original strand, 4592329 - 4592380
Alignment:
| Q |
108 |
ccctgtcatgatttgcagtcagcatttcctactgttgtaatctcggccatat |
159 |
Q |
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| T |
4592329 |
ccctgtcatgatttgctgtcagcatttcctactgtggtagtctcggccatat |
4592380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 252
Target Start/End: Original strand, 4592410 - 4592467
Alignment:
| Q |
195 |
taaatccgatttcaaaattcaaaacacaaactgtccgtatttcatctaacattccata |
252 |
Q |
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|||||| |||||||||||| ||||||||||| || |||| ||| ||||||| |||||| |
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| T |
4592410 |
taaatcagatttcaaaatttaaaacacaaaccgttcgtacttcctctaacaatccata |
4592467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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