View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8334_high_5 (Length: 566)
Name: NF8334_high_5
Description: NF8334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8334_high_5 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 183 - 566
Target Start/End: Complemental strand, 386980 - 386601
Alignment:
| Q |
183 |
ggtggcacaattcctccgcttccaacactccaaatatgctattatagacaaatcgtatggcattctaaagcaggtttcacactagcagtatgttatttat |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
386980 |
ggtggcacaattcctccgcttccaacactccaaatatgctattatagacaaatcgtatggcattctaaagcaggtttcacactagcagtatgttatttat |
386881 |
T |
|
| Q |
283 |
aaatgttaaagataaagcaaacattataaagttgtttttataagtcacttaaccaaagaagtaaagtaaatgttagatataataatccaaatatttagag |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
386880 |
aaatgttaaagataaagcaaacattataaagttgtttttataagtcacttaaccaaagaagtaaagtaaatgttagatataataatccaaatatttagag |
386781 |
T |
|
| Q |
383 |
atgaagcaaattgtatgacattcattctacaataaaaactaaaaatgctctttaaatcagaagtccaatgttgggtgctctttggccaaagtagacctca |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
386780 |
atgaagcaaattgtatgacattcattctacaataaaaactaaaaatactctttaaatcagaagtccaatgttgggtgctctttggccaaagtagacctca |
386681 |
T |
|
| Q |
483 |
ccgttggaatgcctagacaagatagattttcacaattgaaaggccaagaacagcttgaaactgtgaagtaattgtttttaaaaa |
566 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
386680 |
ccgttggaatgcctagaca----agattttcacaattgaaaggccaagaacagcttgaaactgtgaagtaattgtttttaaaaa |
386601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 387132 - 386981
Alignment:
| Q |
1 |
caaattagcatttgtagagcaaggacaagtttcttaaagagatggacctcatatcttttaagtaattgcctcataagcagaagctaaattgaattgactc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
387132 |
caaattagcatttgtagagcaaggacaagtttcttaaagagatggacctcatatcttttaagtaattgcctcataagcagaagctaaattgaattgactc |
387033 |
T |
|
| Q |
101 |
catcattagaaagtttccatgccaaacaatatgctacattgtcccttaatta |
152 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
387032 |
catcattagaaagtttccatgccaaacaatctgctacattgtcccttaatta |
386981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 506 - 566
Target Start/End: Original strand, 49608236 - 49608296
Alignment:
| Q |
506 |
agattttcacaattgaaaggccaagaacagcttgaaactgtgaagtaattgtttttaaaaa |
566 |
Q |
| |
|
||||||||| || ||||| | ||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
49608236 |
agattttcaaaagtgaaatgtcaagaacagcttgaaactgtgaagtaattgtcttcaaaaa |
49608296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 508 - 560
Target Start/End: Complemental strand, 36926568 - 36926516
Alignment:
| Q |
508 |
attttcacaattgaaaggccaagaacagcttgaaactgtgaagtaattgtttt |
560 |
Q |
| |
|
|||| ||||| |||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
36926568 |
atttccacaagtgaaagaccaagaacagcttgaaactgtgaagtgattgtttt |
36926516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University