View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8334_low_10 (Length: 348)
Name: NF8334_low_10
Description: NF8334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8334_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 22 - 276
Target Start/End: Original strand, 38851237 - 38851491
Alignment:
| Q |
22 |
atgaatgtatgcattattgagtagtaaaaaggatcttaccgagtagagtatagtaataagttgtagattccaccctaatctccaagcttctttactcgaa |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38851237 |
atgaatgtatgcattattgagtagtaaaaaggatcttaccgagtagagtatagtaataagttgtagattccactctaatctccaagcttctttactcgaa |
38851336 |
T |
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| Q |
122 |
tctacacatgcgcctattactgctgactgaattgctgccataacgcattgtaacattattccccaatacctcaatgggaatacttctaccaaccttacct |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38851337 |
tctacacatgcgcctattactgctgactgaattgctgccataacgcattgtaacattattccccaatacctcaatgggaatacttctaccaactttacct |
38851436 |
T |
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| Q |
222 |
gtttcaattcaaaacattcacagttttctcatcacaaaactgaaaaatttgtttc |
276 |
Q |
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| T |
38851437 |
gtttcaattcaaaacattcacagttttctcatcacaaaactgaaaaatttgtttc |
38851491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 53 - 234
Target Start/End: Original strand, 29223819 - 29224000
Alignment:
| Q |
53 |
gatcttaccgagtagagtatagtaataagttgtagattccaccctaatctccaagcttctttactcgaatctacacatgcgcctattactgctgactgaa |
152 |
Q |
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|||||||||||||| ||||||||||| || ||||||||||| |||||||||||||||||||||| || || |||||||||||| |||||| |||| |
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| T |
29223819 |
gatcttaccgagtatagtatagtaatcagctgtagattccagtctaatctccaagcttctttactttgatttaggcatgcgcctattgttgctgattgaa |
29223918 |
T |
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| Q |
153 |
ttgctgccataacgcattgtaacattattccccaatacctcaatgggaatacttctaccaaccttacctgtttcaattcaaa |
234 |
Q |
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| T |
29223919 |
ttgcggccataacacatgatagcattattccccaatacctcaatggaaatactttcaccaattttacctgtttaaattcaaa |
29224000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 53 - 225
Target Start/End: Complemental strand, 29147958 - 29147786
Alignment:
| Q |
53 |
gatcttaccgagtagagtatagtaataagttgtagattccaccctaatctccaagcttctttactcgaatctacacatgcgcctattactgctgactgaa |
152 |
Q |
| |
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|||||||||||||| |||||||||||||| || |||||||| |||||||||||||||||||||| || ||| ||||||||||||||||||||||||| |
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| T |
29147958 |
gatcttaccgagtaaagtatagtaataagctgaagattccagtctaatctccaagcttctttactttgatttacgcatgcgcctattactgctgactgaa |
29147859 |
T |
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| Q |
153 |
ttgctgccataacgcattgtaacattattccccaatacctcaatgggaatacttctaccaaccttacctgttt |
225 |
Q |
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| T |
29147858 |
tcgccgccataacacatgatagcattgttccccaatacctcaacggaaataccttcaccaattttacctgttt |
29147786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 53 - 238
Target Start/End: Original strand, 5303180 - 5303365
Alignment:
| Q |
53 |
gatcttaccgagtagagtatagtaataagttgtagattccaccctaatctccaagcttctttactcgaatctacacatgcgcctattactgctgactgaa |
152 |
Q |
| |
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|||||||| || |||||||||||||| ||||||| ||||||||||||||||||||| ||||||| ||||||| || |||||||||| ||||||||| |
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| T |
5303180 |
gatcttactgaatagagtatagtaatgagttgtaaattccaccctaatctccaagcagctttactggaatctatggataagcctattactactgactgaa |
5303279 |
T |
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| Q |
153 |
ttgctgccataacgcattgtaacattattccccaatacctcaatgggaatacttctaccaaccttacctgtttcaattcaaaacat |
238 |
Q |
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|||||||||||| |||| || |||| ||||||||||||||||||| ||||||| |||| | | |||||||| |||| ||||||| |
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| T |
5303280 |
ttgctgccataatgcatgatatcattgttccccaatacctcaatggaaatactttgaccatcttcacctgtttaaatttaaaacat |
5303365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 268
Target Start/End: Original strand, 5303387 - 5303420
Alignment:
| Q |
235 |
acattcacagttttctcatcacaaaactgaaaaa |
268 |
Q |
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| T |
5303387 |
acattcacaattttctcatcacaaaactgaaaaa |
5303420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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